Wall clock time and date at job start Tue Mar 31 2020 22:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.55226 * 2 1 4 4 N 1.46495 * 109.47092 * 304.87212 * 3 2 1 5 5 C 1.34784 * 120.00100 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99563 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99845 * 179.97438 * 5 4 3 8 8 C 1.53007 * 109.46837 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47099 * 180.02562 * 8 7 5 10 10 N 1.29023 * 124.91801 * 89.99865 * 9 8 7 11 11 C 1.31783 * 117.12462 * 179.97438 * 10 9 8 12 12 C 1.33645 * 114.50175 * 359.97438 * 11 10 9 13 13 S 1.70979 * 124.91562 * 269.69549 * 9 8 7 14 14 C 1.53288 * 109.51183 * 120.12630 * 2 1 3 15 15 N 1.47148 * 108.38852 * 67.62192 * 14 2 1 16 16 C 1.36938 * 120.98705 * 230.55902 * 15 14 2 17 17 H 1.08001 * 119.99863 * 153.29877 * 16 15 14 18 18 C 1.38813 * 119.99808 * 333.30057 * 16 15 14 19 19 N 1.31618 * 119.99580 * 343.54885 * 18 16 15 20 20 Si 1.86796 * 119.99837 * 163.55016 * 18 16 15 21 21 H 1.48500 * 109.47585 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46899 * 120.00079 * 20 18 16 23 23 H 1.48505 * 109.47044 * 239.99720 * 20 18 16 24 24 C 1.47159 * 118.03554 * 50.53264 * 15 14 2 25 25 C 1.53301 * 108.38149 * 309.47195 * 24 15 14 26 26 O 1.42952 * 109.22472 * 52.29798 * 25 24 15 27 27 H 1.08995 * 109.47084 * 180.12716 * 1 2 3 28 28 H 1.09004 * 109.47359 * 300.12730 * 1 2 3 29 29 H 1.08997 * 109.47160 * 60.12628 * 1 2 3 30 30 H 1.09001 * 109.46690 * 64.87352 * 3 2 1 31 31 H 1.08995 * 109.46651 * 184.87148 * 3 2 1 32 32 H 0.97000 * 120.00033 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.47203 * 299.99862 * 7 5 4 34 34 H 1.09004 * 109.47519 * 60.00442 * 7 5 4 35 35 H 1.09001 * 109.46690 * 300.00180 * 8 7 5 36 36 H 1.08995 * 109.46651 * 59.99975 * 8 7 5 37 37 H 1.07998 * 122.75066 * 179.97438 * 11 10 9 38 38 H 1.07994 * 126.03773 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.68566 * 187.34742 * 14 2 1 40 40 H 1.09003 * 109.68257 * 307.86000 * 14 2 1 41 41 H 0.97005 * 119.99361 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.68793 * 189.74305 * 24 15 14 43 43 H 1.09006 * 109.67927 * 69.18579 * 24 15 14 44 44 H 1.08999 * 109.50973 * 172.22266 * 25 24 15 45 45 H 1.09001 * 109.50729 * 292.32081 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1663 -1.1332 5 6 1.7717 3.4623 -1.3349 6 8 2.5321 4.0285 -0.5786 7 6 1.1748 4.2073 -2.5009 8 6 1.6867 5.6491 -2.5009 9 6 1.0893 6.3943 -3.6665 10 7 -0.0214 7.0499 -3.6328 11 6 -0.4006 7.6470 -4.7448 12 6 0.4372 7.4865 -5.7736 13 16 1.7890 6.4996 -5.2230 14 6 2.0420 -0.7252 1.2497 15 7 1.6960 -2.1507 1.1336 16 6 1.0608 -2.8073 2.1537 17 1 0.4415 -3.6660 1.9403 18 6 1.2128 -2.3691 3.4621 19 7 2.1956 -1.5503 3.7718 20 14 0.0226 -2.9417 4.7830 21 1 -0.9854 -3.8509 4.1808 22 1 0.7702 -3.6636 5.8437 23 1 -0.6637 -1.7650 5.3746 24 6 2.0521 -2.8498 -0.1114 25 6 1.5396 -2.0209 -1.2948 26 8 2.0075 -0.6764 -1.1655 27 1 -0.3633 -1.0276 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3633 0.5119 -0.8911 30 1 1.7524 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8529 1.7135 -1.7378 33 1 1.4652 3.7190 -3.4311 34 1 0.0882 4.2072 -2.4144 35 1 1.3967 6.1376 -1.5706 36 1 2.7732 5.6488 -2.5877 37 1 -1.3136 8.2191 -4.8187 38 1 0.3101 7.8931 -6.7659 39 1 3.1241 -0.6147 1.3209 40 1 1.5709 -0.3036 2.1377 41 1 2.3016 -1.2438 4.6860 42 1 1.5873 -3.8355 -0.1248 43 1 3.1353 -2.9531 -0.1773 44 1 1.9114 -2.4478 -2.2263 45 1 0.4497 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108406065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:26 Heat of formation + Delta-G solvation = -35.729562 kcal Electronic energy + Delta-G solvation = -27060.043802 eV Core-core repulsion = 23204.337537 eV Total energy + Delta-G solvation = -3855.706265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19036 -40.62310 -40.12636 -36.56517 -35.94554 -34.89910 -33.25033 -33.09670 -30.69813 -29.56528 -28.24738 -27.79041 -26.34452 -24.98143 -24.12440 -22.81082 -21.40967 -20.81899 -20.27059 -19.00550 -18.93989 -18.14680 -17.43783 -16.90387 -16.89378 -16.53327 -16.34423 -16.05207 -15.63867 -15.55068 -15.27683 -15.08238 -15.01068 -14.68200 -14.44484 -14.20360 -13.81543 -13.58140 -13.35407 -13.16066 -13.11002 -12.91938 -12.80953 -12.52253 -12.42468 -12.39198 -12.14194 -12.11242 -11.93594 -11.83795 -11.16115 -10.97335 -10.73772 -10.58964 -10.49594 -10.34735 -10.08695 -9.81056 -8.70748 -7.89526 -5.36708 -0.24557 0.44006 0.83598 1.44938 1.47507 1.57268 1.65340 1.85986 2.18639 2.48283 2.80759 3.18964 3.26026 3.51758 3.71774 3.92871 4.01097 4.03929 4.11859 4.13067 4.29579 4.43599 4.44119 4.47907 4.57355 4.58317 4.59708 4.67235 4.73071 4.81712 4.85096 4.98180 5.01638 5.06346 5.13967 5.22297 5.25908 5.37320 5.41801 5.54808 5.62271 6.30152 6.38652 6.56945 6.80893 7.07480 7.25905 7.76708 8.30679 9.16120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.002107 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.475408 B =13287.342375 C =13752.380886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.707 5.707 5 C 0.511 3.489 6 O -0.586 6.586 7 C -0.120 4.120 8 C -0.026 4.026 9 C 0.035 3.965 10 N -0.503 5.503 11 C 0.018 3.982 12 C -0.252 4.252 13 S 0.147 5.853 14 C 0.167 3.833 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.194 0.806 38 H 0.206 0.794 39 H -0.008 1.008 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.012 0.988 44 H 0.118 0.882 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 14.179 -22.660 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.360 5.360 5 C 0.299 3.701 6 O -0.466 6.466 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.242 4.242 10 N -0.218 5.218 11 C -0.132 4.132 12 C -0.391 4.391 13 S 0.400 5.600 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.187 1.187 22 H -0.223 1.223 23 H -0.218 1.218 24 C -0.024 4.024 25 C -0.024 4.024 26 O -0.303 6.303 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.211 0.789 38 H 0.223 0.777 39 H 0.010 0.990 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.136 0.864 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.173 14.314 -22.079 26.641 hybrid contribution -1.263 -0.220 1.342 1.856 sum -5.436 14.094 -20.737 25.656 Atomic orbital electron populations 1.22111 0.93977 1.02850 1.02136 1.22177 0.94641 0.90627 0.87274 1.20987 0.97869 0.89009 0.89734 1.45862 1.48913 1.11061 1.30115 1.21096 0.80676 0.81719 0.86578 1.90708 1.38149 1.68578 1.49178 1.21581 1.03228 0.94044 0.97273 1.19893 1.00429 0.92750 0.93684 1.27038 0.95118 1.01911 1.00169 1.66296 1.14668 1.10774 1.30100 1.22197 1.02749 1.01507 0.86773 1.27512 0.98107 1.07174 1.06345 1.84038 1.23940 1.46510 1.05468 1.21061 0.95403 0.84402 0.95156 1.44255 1.68607 1.05574 1.14688 1.19534 1.20824 1.12305 0.86011 0.90868 1.25805 0.98793 1.00793 0.99248 1.70188 1.31049 1.38610 1.18399 0.85229 0.78805 0.77490 0.79067 1.18707 1.22262 1.21761 1.21831 0.97020 0.96366 0.87204 1.23101 0.99106 0.81817 0.98423 1.87828 1.73231 1.26408 1.42876 0.92031 0.92724 0.90182 0.91268 0.92580 0.74735 0.86000 0.86846 0.89684 0.88671 0.78936 0.77691 0.98990 0.91606 0.94099 0.91013 0.97011 0.86432 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 7.86 71.98 0.57 -4.27 16 2 C 0.09 3.37 0.78 -10.69 -0.01 3.37 16 3 C 0.15 5.03 4.85 86.38 0.42 5.45 16 4 N -0.71 -18.15 5.19 -463.06 -2.41 -20.56 16 5 C 0.51 13.28 7.83 87.65 0.69 13.96 16 6 O -0.59 -20.41 15.98 -3.02 -0.05 -20.45 16 7 C -0.12 -2.06 5.68 29.85 0.17 -1.89 16 8 C -0.03 -0.50 5.09 29.85 0.15 -0.35 16 9 C 0.03 0.62 6.64 88.52 0.59 1.21 16 10 N -0.50 -10.21 10.54 -191.45 -2.02 -12.23 16 11 C 0.02 0.26 11.35 83.66 0.95 1.21 16 12 C -0.25 -2.77 11.37 66.78 0.76 -2.01 16 13 S 0.15 1.91 23.18 -56.49 -1.31 0.61 16 14 C 0.17 7.95 4.11 86.35 0.35 8.30 16 15 N -0.61 -29.52 2.56 -697.53 -1.79 -31.31 16 16 C -0.26 -13.62 9.65 84.03 0.81 -12.81 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 18 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 19 N -0.94 -55.15 11.14 21.65 0.24 -54.91 16 20 Si 0.97 44.12 29.58 68.60 2.03 46.15 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 C 0.10 4.00 6.74 86.35 0.58 4.58 16 25 C 0.05 1.63 6.60 72.08 0.48 2.11 16 26 O -0.38 -13.04 10.17 -148.98 -1.52 -14.56 16 27 H 0.06 2.12 6.11 -2.39 -0.01 2.11 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 1.91 6.59 -2.39 -0.02 1.89 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 8.43 7.00 -92.71 -0.65 7.78 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 37 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.21 0.90 8.06 -2.91 -0.02 0.88 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.07 3.53 6.16 -2.39 -0.01 3.51 16 41 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 42 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16 43 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.12 2.80 8.14 -2.39 -0.02 2.79 16 45 H 0.06 1.77 6.26 -2.39 -0.01 1.75 16 Total: -1.00 -71.73 376.89 0.47 -71.26 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.36 Total: 19.52 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.92 Total: 16.49 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -5.97 Total: -119.01 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.56 Total: -35.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.61 kcal Total: -71.73 0.47 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108406065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.529 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds