Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.62348 * 2 1 4 4 C 1.34473 * 108.70370 * 179.73298 * 3 2 1 5 5 C 1.50699 * 126.16688 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47492 * 89.97359 * 5 4 3 7 7 C 1.46902 * 110.99520 * 294.30135 * 6 5 4 8 8 C 1.53242 * 109.33644 * 172.74610 * 7 6 5 9 9 N 1.47071 * 108.52301 * 53.82845 * 8 7 6 10 10 C 1.34777 * 120.88222 * 128.78775 * 9 8 7 11 11 O 1.21281 * 120.00256 * 180.02562 * 10 9 8 12 12 C 1.50704 * 119.99784 * 0.03162 * 10 9 8 13 13 S 1.80999 * 109.46939 * 179.97438 * 12 10 9 14 14 C 1.76199 * 99.99814 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00306 * 0.02562 * 14 13 12 16 16 C 1.38803 * 120.00145 * 180.02562 * 14 13 12 17 17 N 1.31638 * 119.99639 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00314 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47171 * 59.99799 * 18 16 14 20 20 H 1.48502 * 109.47275 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47017 * 300.00083 * 18 16 14 22 22 C 1.47084 * 118.23811 * 308.81781 * 9 8 7 23 23 C 1.46895 * 110.99986 * 169.99973 * 6 5 4 24 24 C 1.34334 * 107.66703 * 359.97438 * 4 3 2 25 25 C 1.50704 * 126.44071 * 180.02562 * 24 4 3 26 26 O 1.33970 * 125.61642 * 179.68298 * 2 1 3 27 27 H 1.09009 * 109.47055 * 90.00152 * 1 2 3 28 28 H 1.08997 * 109.47697 * 210.00122 * 1 2 3 29 29 H 1.09003 * 109.46973 * 330.00527 * 1 2 3 30 30 H 1.09006 * 109.46838 * 209.97379 * 5 4 3 31 31 H 1.09003 * 109.47003 * 329.97245 * 5 4 3 32 32 H 1.08993 * 109.49497 * 292.70413 * 7 6 5 33 33 H 1.09000 * 109.49652 * 52.78899 * 7 6 5 34 34 H 1.09002 * 109.62508 * 294.11830 * 8 7 6 35 35 H 1.09003 * 109.78687 * 173.63855 * 8 7 6 36 36 H 1.09004 * 109.46725 * 299.99184 * 12 10 9 37 37 H 1.09000 * 109.47053 * 59.99301 * 12 10 9 38 38 H 0.96994 * 119.99673 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.62538 * 291.46939 * 22 9 8 40 40 H 1.08998 * 109.78835 * 170.98914 * 22 9 8 41 41 H 1.08993 * 109.49439 * 307.21516 * 23 6 5 42 42 H 1.08998 * 109.49216 * 67.26960 * 23 6 5 43 43 H 1.09004 * 109.46698 * 90.00388 * 25 24 4 44 44 H 1.09004 * 109.46769 * 209.99504 * 25 24 4 45 45 H 1.08994 * 109.47183 * 330.00206 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0059 5 6 4.7571 1.5725 0.0086 6 7 5.1429 1.8704 1.3944 7 6 4.1041 2.6574 2.0724 8 6 4.4575 2.7916 3.5574 9 7 5.8198 3.3351 3.6662 10 6 6.0776 4.4053 4.4439 11 8 7.2069 4.8405 4.5215 12 6 4.9625 5.0610 5.2170 13 16 5.6221 6.4590 6.1586 14 6 4.1481 7.0227 6.9422 15 1 3.2123 6.5145 6.7620 16 6 4.1895 8.1201 7.7912 17 7 5.3299 8.7399 8.0105 18 14 2.6270 8.7173 8.6226 19 1 2.0695 7.6309 9.4675 20 1 2.9372 9.8957 9.4715 21 1 1.6318 9.1007 7.5891 22 6 6.8933 2.6801 2.9034 23 6 6.4441 2.5502 1.4441 24 6 3.5697 -0.6758 0.0102 25 6 4.7936 -1.5550 0.0180 26 8 2.2872 -1.0891 0.0060 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 5.5843 1.0778 -0.5005 31 1 4.5152 2.5010 -0.5088 32 1 4.0459 3.6479 1.6214 33 1 3.1425 2.1542 1.9714 34 1 4.4148 1.8122 4.0339 35 1 3.7539 3.4667 4.0446 36 1 4.2001 5.4167 4.5239 37 1 4.5213 4.3374 5.9025 38 1 5.3589 9.5065 8.6040 39 1 7.0848 1.6900 3.3171 40 1 7.8017 3.2804 2.9548 41 1 7.1794 1.9694 0.8874 42 1 6.3533 3.5421 1.0014 43 1 5.0844 -1.7638 1.0476 44 1 4.5715 -2.4915 -0.4938 45 1 5.6101 -1.0459 -0.4940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112630345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = -1.282752 kcal Electronic energy + Delta-G solvation = -26856.149476 eV Core-core repulsion = 23001.936937 eV Total energy + Delta-G solvation = -3854.212539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.64887 -39.94488 -37.99691 -35.52776 -34.43383 -33.33219 -32.41022 -31.55660 -30.48033 -29.60135 -28.38521 -25.88748 -25.42899 -24.28859 -23.73878 -21.95904 -21.43330 -20.60936 -18.95853 -17.71088 -17.24905 -16.92822 -16.65783 -15.73125 -15.41249 -15.37716 -15.11941 -15.02702 -14.78723 -14.54944 -14.18078 -13.91964 -13.83797 -13.49613 -13.36625 -13.10548 -13.09107 -12.80462 -12.75383 -12.55072 -12.29285 -12.04023 -11.80330 -11.61308 -11.41909 -11.21719 -11.14527 -11.02417 -11.01133 -10.75461 -10.74222 -9.79564 -9.32999 -9.04247 -8.87602 -8.77481 -8.34920 -8.21097 -6.48235 -6.19730 -3.90274 1.13611 2.27310 2.35258 2.95025 3.07983 3.24843 3.26989 3.30387 3.55971 3.62840 3.84829 4.22117 4.37188 4.41669 4.68308 4.71130 4.84116 4.86438 4.96191 4.98798 5.02909 5.08623 5.13232 5.15134 5.18664 5.26104 5.34389 5.34982 5.37872 5.43727 5.57481 5.67712 5.68491 5.76543 5.77253 5.84003 5.90201 5.98558 6.01109 6.14216 6.60282 6.70112 6.78077 7.47223 7.59853 7.61742 8.36850 8.58644 9.25329 10.87678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002404 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.882864 B =11646.851782 C =13160.485198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.475 5.475 4 C -0.008 4.008 5 C 0.138 3.862 6 N -0.533 5.533 7 C 0.043 3.957 8 C 0.115 3.885 9 N -0.622 5.622 10 C 0.536 3.464 11 O -0.518 6.518 12 C -0.151 4.151 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.120 3.880 23 C 0.042 3.958 24 C -0.029 4.029 25 C -0.064 4.064 26 O -0.204 6.204 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -22.792 -19.595 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 N -0.206 5.206 4 C -0.128 4.128 5 C 0.010 3.990 6 N -0.258 5.258 7 C -0.086 4.086 8 C -0.009 4.009 9 N -0.359 5.359 10 C 0.324 3.676 11 O -0.393 6.393 12 C -0.301 4.301 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.086 4.086 24 C -0.083 4.083 25 C -0.121 4.121 26 O -0.092 6.092 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.093 -21.839 -19.125 29.316 hybrid contribution -2.323 -0.085 -0.034 2.325 sum -6.416 -21.924 -19.158 29.814 Atomic orbital electron populations 1.20247 0.81338 1.05191 1.04563 1.26172 0.96324 0.78575 1.01163 1.70339 1.01655 1.30326 1.18233 1.21179 0.92686 0.91944 1.06947 1.20256 0.92025 0.96740 0.89971 1.61953 1.02932 1.46505 1.14452 1.22511 0.95428 0.96489 0.94124 1.21788 0.83598 0.99812 0.95671 1.48163 1.09058 1.31140 1.47492 1.20329 0.90073 0.78744 0.78477 1.90684 1.23101 1.62354 1.63132 1.23551 1.00057 1.04248 1.02244 1.85383 1.14201 1.29101 1.54717 1.22821 0.95029 1.18007 1.32468 0.91006 1.24993 0.97216 0.95480 0.95888 1.70012 1.24921 1.20152 1.35233 0.86226 0.81897 0.78232 0.79163 1.19928 1.20813 1.19944 1.21569 0.91393 0.98074 0.89300 1.22513 0.90808 0.97568 0.97705 1.23160 0.83742 0.95014 1.06365 1.20261 0.89852 0.97824 1.04138 1.84379 1.16660 1.37822 1.70323 0.89078 0.89425 0.88024 0.89094 0.92919 0.93976 0.89130 0.91022 0.88964 0.89355 0.89273 0.92145 0.91150 0.88496 0.89529 0.93983 0.89350 0.90703 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.18 1.75 8.34 -12.95 -0.11 1.64 16 3 N -0.48 -5.42 10.38 -7.36 -0.08 -5.49 16 4 C -0.01 -0.08 5.71 -82.81 -0.47 -0.55 16 5 C 0.14 1.26 5.30 -4.98 -0.03 1.23 16 6 N -0.53 -5.46 4.62 -235.77 -1.09 -6.55 16 7 C 0.04 0.50 5.47 -3.70 -0.02 0.48 16 8 C 0.12 1.45 6.50 -3.61 -0.02 1.43 16 9 N -0.62 -9.39 3.01 -172.46 -0.52 -9.91 16 10 C 0.54 10.57 7.73 -10.98 -0.08 10.48 16 11 O -0.52 -12.09 15.32 5.56 0.09 -12.00 16 12 C -0.15 -3.16 4.52 36.01 0.16 -3.00 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 18 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.12 1.49 6.59 -3.60 -0.02 1.47 16 23 C 0.04 0.43 5.62 -3.70 -0.02 0.40 16 24 C -0.03 -0.27 7.39 -35.68 -0.26 -0.53 16 25 C -0.06 -0.36 10.22 36.01 0.37 0.01 16 26 O -0.20 -2.04 10.78 5.37 0.06 -1.98 16 27 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.61 6.99 -51.93 -0.36 0.25 16 31 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.10 6.37 -51.93 -0.33 0.76 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.17 6.02 -51.93 -0.31 0.86 16 36 H 0.09 1.74 7.66 -51.91 -0.40 1.34 16 37 H 0.09 1.74 8.00 -51.92 -0.42 1.33 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.34 7.07 -51.93 -0.37 0.97 16 41 H 0.09 0.64 7.99 -51.93 -0.41 0.23 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.37 7.17 -51.93 -0.37 0.00 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -36.59 382.46 -8.96 -45.55 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.74 Total: -2.44 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 0.06 Total: 0.06 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.95 Total: -47.64 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.14 Total: -13.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.59 -8.96 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.272 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds