Wall clock time and date at job start Tue Mar 31 2020 22:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.62348 * 2 1 4 4 C 1.34473 * 108.70370 * 179.73298 * 3 2 1 5 5 C 1.50699 * 126.16688 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47492 * 89.97359 * 5 4 3 7 7 C 1.46902 * 110.99520 * 294.30135 * 6 5 4 8 8 C 1.53242 * 109.33644 * 172.74610 * 7 6 5 9 9 N 1.47071 * 108.52301 * 53.82845 * 8 7 6 10 10 C 1.34777 * 120.88222 * 128.78775 * 9 8 7 11 11 O 1.21281 * 120.00256 * 180.02562 * 10 9 8 12 12 C 1.50704 * 119.99784 * 0.03162 * 10 9 8 13 13 S 1.80999 * 109.46939 * 179.97438 * 12 10 9 14 14 C 1.76199 * 99.99814 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00306 * 0.02562 * 14 13 12 16 16 C 1.38803 * 120.00145 * 180.02562 * 14 13 12 17 17 N 1.31638 * 119.99639 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00314 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47171 * 59.99799 * 18 16 14 20 20 H 1.48502 * 109.47275 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47017 * 300.00083 * 18 16 14 22 22 C 1.47084 * 118.23811 * 308.81781 * 9 8 7 23 23 C 1.46895 * 110.99986 * 169.99973 * 6 5 4 24 24 C 1.34334 * 107.66703 * 359.97438 * 4 3 2 25 25 C 1.50704 * 126.44071 * 180.02562 * 24 4 3 26 26 O 1.33970 * 125.61642 * 179.68298 * 2 1 3 27 27 H 1.09009 * 109.47055 * 90.00152 * 1 2 3 28 28 H 1.08997 * 109.47697 * 210.00122 * 1 2 3 29 29 H 1.09003 * 109.46973 * 330.00527 * 1 2 3 30 30 H 1.09006 * 109.46838 * 209.97379 * 5 4 3 31 31 H 1.09003 * 109.47003 * 329.97245 * 5 4 3 32 32 H 1.08993 * 109.49497 * 292.70413 * 7 6 5 33 33 H 1.09000 * 109.49652 * 52.78899 * 7 6 5 34 34 H 1.09002 * 109.62508 * 294.11830 * 8 7 6 35 35 H 1.09003 * 109.78687 * 173.63855 * 8 7 6 36 36 H 1.09004 * 109.46725 * 299.99184 * 12 10 9 37 37 H 1.09000 * 109.47053 * 59.99301 * 12 10 9 38 38 H 0.96994 * 119.99673 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.62538 * 291.46939 * 22 9 8 40 40 H 1.08998 * 109.78835 * 170.98914 * 22 9 8 41 41 H 1.08993 * 109.49439 * 307.21516 * 23 6 5 42 42 H 1.08998 * 109.49216 * 67.26960 * 23 6 5 43 43 H 1.09004 * 109.46698 * 90.00388 * 25 24 4 44 44 H 1.09004 * 109.46769 * 209.99504 * 25 24 4 45 45 H 1.08994 * 109.47183 * 330.00206 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0059 5 6 4.7571 1.5725 0.0086 6 7 5.1429 1.8704 1.3944 7 6 4.1041 2.6574 2.0724 8 6 4.4575 2.7916 3.5574 9 7 5.8198 3.3351 3.6662 10 6 6.0776 4.4053 4.4439 11 8 7.2069 4.8405 4.5215 12 6 4.9625 5.0610 5.2170 13 16 5.6221 6.4590 6.1586 14 6 4.1481 7.0227 6.9422 15 1 3.2123 6.5145 6.7620 16 6 4.1895 8.1201 7.7912 17 7 5.3299 8.7399 8.0105 18 14 2.6270 8.7173 8.6226 19 1 2.0695 7.6309 9.4675 20 1 2.9372 9.8957 9.4715 21 1 1.6318 9.1007 7.5891 22 6 6.8933 2.6801 2.9034 23 6 6.4441 2.5502 1.4441 24 6 3.5697 -0.6758 0.0102 25 6 4.7936 -1.5550 0.0180 26 8 2.2872 -1.0891 0.0060 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 5.5843 1.0778 -0.5005 31 1 4.5152 2.5010 -0.5088 32 1 4.0459 3.6479 1.6214 33 1 3.1425 2.1542 1.9714 34 1 4.4148 1.8122 4.0339 35 1 3.7539 3.4667 4.0446 36 1 4.2001 5.4167 4.5239 37 1 4.5213 4.3374 5.9025 38 1 5.3589 9.5065 8.6040 39 1 7.0848 1.6900 3.3171 40 1 7.8017 3.2804 2.9548 41 1 7.1794 1.9694 0.8874 42 1 6.3533 3.5421 1.0014 43 1 5.0844 -1.7638 1.0476 44 1 4.5715 -2.4915 -0.4938 45 1 5.6101 -1.0459 -0.4940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112630345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:29 Heat of formation + Delta-G solvation = -28.803307 kcal Electronic energy + Delta-G solvation = -26857.342856 eV Core-core repulsion = 23001.936937 eV Total energy + Delta-G solvation = -3855.405920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.32247 -41.21829 -39.18190 -36.49225 -35.31683 -34.59749 -34.04414 -32.61906 -30.99676 -30.86852 -29.45806 -27.69586 -26.66170 -25.03287 -24.72114 -22.68074 -22.50181 -21.35505 -20.36446 -19.52292 -18.32642 -17.85375 -17.54391 -17.04048 -16.88595 -16.74488 -16.30239 -16.14718 -15.85115 -15.71729 -15.24443 -14.97750 -14.67277 -14.52835 -14.48683 -14.21916 -13.90396 -13.59687 -13.47718 -13.39616 -13.27157 -13.18859 -12.97297 -12.87718 -12.82269 -12.65422 -12.51895 -12.37276 -12.19309 -11.94473 -11.74092 -11.46602 -11.14110 -10.92282 -10.30135 -9.90878 -9.53758 -9.33029 -8.69415 -8.35673 -6.14547 0.48318 1.22892 1.43172 1.43596 1.51062 1.53910 1.58034 1.77563 2.04628 2.26187 2.84306 2.98194 3.15587 3.22310 3.60221 3.68297 3.82500 3.86227 3.98267 4.14048 4.17324 4.22897 4.26020 4.31076 4.40125 4.43063 4.49935 4.56325 4.63883 4.67225 4.72168 4.74693 4.76734 4.80280 4.85144 4.94802 5.01219 5.13467 5.26487 5.38579 5.40009 5.45293 5.83039 5.91283 6.18239 6.24246 6.79603 7.05107 7.08356 8.73433 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002404 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.882864 B =11646.851782 C =13160.485198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.178 3.822 3 N -0.510 5.510 4 C -0.031 4.031 5 C 0.142 3.858 6 N -0.529 5.529 7 C 0.053 3.947 8 C 0.113 3.887 9 N -0.610 5.610 10 C 0.534 3.466 11 O -0.563 6.563 12 C -0.125 4.125 13 S -0.148 6.148 14 C -0.547 4.547 15 H 0.082 0.918 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.262 1.262 22 C 0.115 3.885 23 C 0.051 3.949 24 C -0.030 4.030 25 C -0.063 4.063 26 O -0.214 6.214 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.027 0.973 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -25.018 -20.501 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.029 4.029 3 N -0.240 5.240 4 C -0.150 4.150 5 C 0.015 3.985 6 N -0.254 5.254 7 C -0.076 4.076 8 C -0.010 4.010 9 N -0.344 5.344 10 C 0.322 3.678 11 O -0.442 6.442 12 C -0.276 4.276 13 S 0.079 5.921 14 C -0.695 4.695 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.820 3.180 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.007 4.007 23 C -0.077 4.077 24 C -0.084 4.084 25 C -0.120 4.120 26 O -0.102 6.102 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.046 0.954 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.716 -24.115 -20.071 31.892 hybrid contribution -1.835 0.462 0.134 1.897 sum -7.551 -23.653 -19.938 31.843 Atomic orbital electron populations 1.20457 0.78827 1.06107 1.05860 1.26980 0.97675 0.78143 1.00071 1.70326 1.02583 1.31493 1.19626 1.21384 0.92683 0.92708 1.08258 1.20313 0.92806 0.96354 0.89040 1.61974 1.02449 1.45622 1.15314 1.22339 0.95983 0.95875 0.93377 1.21970 0.82001 1.00341 0.96650 1.48170 1.10892 1.29456 1.45900 1.20087 0.88906 0.79747 0.79032 1.90668 1.24427 1.64066 1.64996 1.23368 1.00517 1.01715 1.01996 1.85539 1.16649 1.33229 1.56653 1.23154 0.95097 1.18530 1.32738 0.90021 1.26143 1.01127 0.95430 0.96414 1.70178 1.27645 1.20775 1.36113 0.84999 0.76971 0.77875 0.78126 1.18575 1.20259 1.18697 1.21801 0.90046 0.98187 0.90648 1.22489 0.91568 0.97647 0.96036 1.23790 0.84324 0.95253 1.05049 1.20440 0.88732 0.97995 1.04799 1.84400 1.17197 1.38172 1.70481 0.87492 0.87697 0.87829 0.86176 0.94229 0.95610 0.89273 0.89354 0.89110 0.87930 0.87560 0.91933 0.89187 0.90052 0.85876 0.95415 0.88903 0.89531 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.18 3.17 8.34 88.34 0.74 3.91 16 3 N -0.51 -11.21 10.38 -291.98 -3.03 -14.24 16 4 C -0.03 -0.60 5.71 41.26 0.24 -0.37 16 5 C 0.14 2.31 5.30 85.56 0.45 2.76 16 6 N -0.53 -9.67 4.62 -899.84 -4.16 -13.82 16 7 C 0.05 1.18 5.47 86.38 0.47 1.65 16 8 C 0.11 2.67 6.50 86.35 0.56 3.23 16 9 N -0.61 -17.84 3.01 -817.93 -2.46 -20.30 16 10 C 0.53 21.23 7.73 87.66 0.68 21.90 16 11 O -0.56 -27.06 15.32 -3.03 -0.05 -27.10 16 12 C -0.12 -5.26 4.52 71.24 0.32 -4.94 16 13 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 14 C -0.55 -31.85 9.50 67.96 0.65 -31.20 16 15 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.79 5.49 84.86 0.47 1.26 16 17 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 18 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 C 0.12 2.70 6.59 86.35 0.57 3.27 16 23 C 0.05 0.90 5.62 86.38 0.49 1.39 16 24 C -0.03 -0.50 7.39 24.79 0.18 -0.32 16 25 C -0.06 -0.52 10.22 71.24 0.73 0.21 16 26 O -0.21 -3.96 10.78 -3.70 -0.04 -4.00 16 27 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 1.20 6.99 -2.38 -0.02 1.18 16 31 H 0.04 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 2.07 6.37 -2.39 -0.02 2.05 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.17 6.02 -2.39 -0.01 2.16 16 36 H 0.10 4.00 7.66 -2.39 -0.02 3.98 16 37 H 0.11 4.09 8.00 -2.40 -0.02 4.07 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.22 7.07 -2.39 -0.02 2.20 16 41 H 0.12 1.35 7.99 -2.39 -0.02 1.33 16 42 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.11 0.49 7.17 -2.39 -0.02 0.47 16 Total: -1.00 -82.22 382.46 -0.30 -82.52 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.00 Total: 13.72 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 7.29 Total: 3.03 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -9.37 Total: -104.68 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.09 Total: -31.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.22 -0.30 -82.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112630345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.718 kcal (2) G-P(sol) polarization free energy of solvation -82.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds