Wall clock time and date at job start Tue Mar 31 2020 22:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35448 * 126.77837 * 2 1 4 4 C 1.41378 * 103.98674 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.80329 * 180.02562 * 4 3 2 6 6 N 1.46892 * 109.47477 * 94.99668 * 5 4 3 7 7 C 1.46907 * 111.00032 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.64092 * 323.30892 * 7 6 5 9 9 C 1.55157 * 110.71791 * 86.45276 * 7 6 5 10 10 C 1.54907 * 101.58251 * 153.86572 * 9 7 6 11 11 N 1.47427 * 104.82907 * 322.99134 * 10 9 7 12 12 C 1.34778 * 125.64500 * 204.08777 * 11 10 9 13 13 O 1.21282 * 120.00178 * 180.02562 * 12 11 10 14 14 C 1.50703 * 120.00172 * 0.02746 * 12 11 10 15 15 S 1.81000 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99871 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99752 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 0.28020 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71945 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72142 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72250 * 20 18 16 24 24 C 1.47020 * 108.70573 * 24.35642 * 11 10 9 25 25 H 1.08991 * 109.88365 * 118.13107 * 24 11 10 26 26 C 1.53003 * 109.87976 * 239.29932 * 24 11 10 27 27 N 1.30181 * 106.39343 * 0.25635 * 4 3 2 28 28 O 1.20916 * 111.60492 * 359.54221 * 27 4 3 29 29 H 1.09002 * 109.46987 * 90.00399 * 1 2 3 30 30 H 1.08994 * 109.47389 * 209.99924 * 1 2 3 31 31 H 1.08996 * 109.46936 * 330.00565 * 1 2 3 32 32 H 1.08000 * 128.00564 * 0.05050 * 3 2 1 33 33 H 1.09001 * 109.46892 * 334.98957 * 5 4 3 34 34 H 1.09002 * 109.47016 * 215.00038 * 5 4 3 35 35 H 1.00907 * 111.00157 * 303.95055 * 6 5 4 36 36 H 1.09002 * 111.00591 * 35.79278 * 9 7 6 37 37 H 1.09004 * 111.03481 * 271.95548 * 9 7 6 38 38 H 1.08995 * 110.37016 * 204.15408 * 10 9 7 39 39 H 1.09004 * 110.36889 * 81.82092 * 10 9 7 40 40 H 1.09005 * 109.47194 * 59.99652 * 14 12 11 41 41 H 1.09000 * 109.46904 * 299.99694 * 14 12 11 42 42 H 0.97005 * 119.99723 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47472 * 58.53868 * 26 24 11 44 44 H 1.09000 * 109.46953 * 178.55051 * 26 24 11 45 45 H 1.09007 * 109.47031 * 298.54243 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0003 6 7 5.4048 1.4428 1.3793 7 6 6.6734 2.1825 1.4185 8 1 7.2949 1.9252 0.5608 9 6 6.4157 3.7117 1.4706 10 6 7.7008 4.2199 2.1706 11 7 8.0199 3.1852 3.1711 12 6 8.7411 3.3742 4.2939 13 8 8.9427 2.4464 5.0485 14 6 9.2969 4.7384 4.6118 15 16 10.2097 4.6691 6.1732 16 6 10.7341 6.3468 6.2957 17 1 10.4645 7.0545 5.5257 18 6 11.4927 6.7592 7.3825 19 7 11.8849 8.0125 7.4738 20 14 11.9643 5.5339 8.7112 21 1 10.9206 5.5230 9.7675 22 1 12.0803 4.1784 8.1159 23 1 13.2670 5.9261 9.3065 24 6 7.4267 1.9116 2.7379 25 1 8.2119 1.1737 2.5740 26 6 6.4470 1.4064 3.7991 27 7 3.4763 -0.7565 -0.0065 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 2.0345 2.1270 0.0008 33 1 4.7630 2.2873 -0.4341 34 1 5.6604 0.7581 -0.5903 35 1 4.7098 1.8850 1.9622 36 1 5.5310 3.9388 2.0654 37 1 6.3267 4.1279 0.4671 38 1 7.5136 5.1757 2.6598 39 1 8.5133 4.3142 1.4501 40 1 8.4782 5.4525 4.7013 41 1 9.9675 5.0529 3.8121 42 1 12.4153 8.3006 8.2331 43 1 5.6697 2.1531 3.9608 44 1 5.9922 0.4757 3.4599 45 1 6.9816 1.2304 4.7326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:18 Heat of formation + Delta-G solvation = 9.072155 kcal Electronic energy + Delta-G solvation = -26327.021084 eV Core-core repulsion = 22473.257567 eV Total energy + Delta-G solvation = -3853.763516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.86364 -41.38910 -39.17790 -36.79867 -34.77814 -34.68212 -34.08123 -32.56284 -31.77068 -30.01074 -28.59540 -27.86840 -27.29523 -25.85448 -24.01774 -23.90334 -21.68683 -21.09982 -20.27012 -19.57671 -18.60153 -18.22120 -18.06017 -17.34002 -17.12977 -16.92574 -16.28576 -16.11971 -15.75083 -15.36468 -14.99831 -14.94312 -14.70085 -14.56512 -14.28667 -13.94234 -13.81479 -13.78513 -13.62472 -13.50910 -13.34877 -13.19601 -13.10345 -13.02141 -12.89403 -12.68277 -12.53417 -11.93909 -11.89204 -11.85447 -11.70863 -11.18432 -11.16656 -10.90497 -10.54957 -10.20879 -9.73693 -9.42673 -9.02206 -8.52953 -6.24050 0.57644 0.94634 1.24724 1.29784 1.44526 1.52101 1.53081 2.02855 2.23820 2.29504 2.67082 2.85235 3.05265 3.29074 3.40736 3.52801 3.66382 3.83199 4.03001 4.14724 4.16549 4.17483 4.31348 4.32164 4.36383 4.38285 4.44413 4.63698 4.64380 4.67167 4.71893 4.75533 4.78249 4.94959 4.98576 5.05260 5.07088 5.08960 5.29801 5.32464 5.45381 5.69482 5.89925 6.09683 6.29405 6.38326 6.92305 7.08725 7.38275 8.59273 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.001867 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.113602 B =14992.565965 C =15205.067108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.237 4.237 4 C 0.012 3.988 5 C 0.142 3.858 6 N -0.679 5.679 7 C 0.099 3.901 8 H 0.111 0.889 9 C -0.148 4.148 10 C 0.089 3.911 11 N -0.612 5.612 12 C 0.547 3.453 13 O -0.561 6.561 14 C -0.101 4.101 15 S -0.177 6.177 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.048 3.952 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.239 1.239 23 H -0.258 1.258 24 C 0.140 3.860 25 H 0.060 0.940 26 C -0.141 4.141 27 N -0.389 5.389 28 O 0.078 5.922 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.352 0.648 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.277 0.723 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.181 -11.673 -22.386 35.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.258 4.258 4 C -0.147 4.147 5 C 0.013 3.987 6 N -0.312 5.312 7 C -0.012 4.012 8 H 0.129 0.871 9 C -0.187 4.187 10 C -0.033 4.033 11 N -0.348 5.348 12 C 0.334 3.666 13 O -0.439 6.439 14 C -0.252 4.252 15 S 0.049 5.951 16 C -0.676 4.676 17 H 0.082 0.918 18 C -0.158 4.158 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.163 1.163 23 H -0.182 1.182 24 C 0.036 3.964 25 H 0.078 0.922 26 C -0.200 4.200 27 N -0.096 5.096 28 O 0.013 5.987 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.214 0.786 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -23.608 -14.551 -21.145 34.874 hybrid contribution -0.114 2.613 -0.027 2.616 sum -23.723 -11.937 -21.172 33.964 Atomic orbital electron populations 1.20558 0.81343 1.05893 1.05389 1.25296 0.97941 0.85561 1.00924 1.22787 0.90414 1.02243 1.10378 1.23794 0.98198 0.89841 1.02868 1.20219 0.89682 0.98342 0.90432 1.60248 1.05529 1.55574 1.09812 1.22449 0.91245 0.91618 0.95886 0.87087 1.23509 0.96868 0.95398 1.02949 1.22617 0.98518 0.91512 0.90668 1.48503 1.52202 1.12508 1.21546 1.19652 0.77563 0.89201 0.80146 1.90680 1.59533 1.44403 1.49287 1.23204 1.03288 0.97768 1.00901 1.84760 1.67767 1.14246 1.28282 1.22434 1.39298 0.93856 1.11983 0.91847 1.25526 0.94132 0.96756 0.99381 1.70012 1.36552 1.16861 1.31830 0.85893 0.79343 0.81116 0.80183 1.18690 1.16315 1.18182 1.21537 0.94967 0.84836 0.95062 0.92179 1.21815 0.98374 1.02019 0.97763 1.73886 0.97514 1.17942 1.20236 1.84807 1.11456 1.34552 1.67839 0.87877 0.89299 0.87189 0.78614 0.89603 0.89633 0.82787 0.89847 0.86417 0.89868 0.89424 0.87226 0.87202 0.91335 0.92525 0.90022 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.58 16 2 C -0.03 -0.37 7.49 25.04 0.19 -0.18 16 3 C -0.24 -2.42 11.06 22.40 0.25 -2.17 16 4 C 0.01 0.18 6.84 43.58 0.30 0.48 16 5 C 0.14 1.56 6.13 85.56 0.52 2.08 16 6 N -0.68 -8.97 4.87 -489.44 -2.39 -11.35 16 7 C 0.10 1.31 3.10 46.11 0.14 1.46 16 8 H 0.11 1.25 7.89 -2.39 -0.02 1.23 16 9 C -0.15 -1.44 6.63 31.99 0.21 -1.22 16 10 C 0.09 1.47 6.69 86.85 0.58 2.05 16 11 N -0.61 -16.02 3.08 -788.04 -2.43 -18.45 16 12 C 0.55 20.15 7.65 87.66 0.67 20.82 16 13 O -0.56 -25.45 14.75 -3.04 -0.04 -25.50 16 14 C -0.10 -3.95 5.16 71.24 0.37 -3.58 16 15 S -0.18 -9.17 18.54 -56.49 -1.05 -10.21 16 16 C -0.53 -30.99 10.04 67.96 0.68 -30.31 16 17 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 18 C 0.05 2.82 5.50 84.86 0.47 3.28 16 19 N -0.91 -55.72 13.97 21.65 0.30 -55.42 16 20 Si 0.91 45.52 27.74 68.60 1.90 47.42 16 21 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.24 -12.02 6.73 99.48 0.67 -11.35 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 24 C 0.14 3.20 3.49 45.35 0.16 3.36 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 C -0.14 -3.57 8.19 71.98 0.59 -2.98 16 27 N -0.39 -8.23 12.07 -49.55 -0.60 -8.82 16 28 O 0.08 1.43 11.20 71.61 0.80 2.23 16 29 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.11 -0.13 8.14 -2.39 -0.02 -0.14 16 32 H 0.20 0.75 8.06 -2.91 -0.02 0.72 16 33 H 0.09 0.45 8.13 -2.39 -0.02 0.43 16 34 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.35 4.34 7.53 -89.69 -0.68 3.66 16 36 H 0.08 0.80 7.81 -2.39 -0.02 0.78 16 37 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.08 1.39 7.48 -2.39 -0.02 1.37 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.11 3.95 7.85 -2.39 -0.02 3.93 16 41 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 42 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 43 H 0.06 1.29 7.84 -2.39 -0.02 1.27 16 44 H 0.08 1.93 7.45 -2.39 -0.02 1.91 16 45 H 0.03 1.00 6.74 -2.38 -0.02 0.98 16 Total: -1.00 -80.63 383.80 2.67 -77.96 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.29 Total: 8.47 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.87 Total: -6.33 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -5.11 Total: -94.05 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.76 Total: -23.26 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.21 kcal Total: -80.63 2.67 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.035 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds