Wall clock time and date at job start Tue Mar 31 2020 22:15:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.41385 * 126.79913 * 2 1
4 4 C 1.35450 * 103.98167 * 180.09408 * 3 2 1
5 5 C 1.50704 * 126.77302 * 179.90602 * 4 3 2
6 6 N 1.46895 * 109.46829 * 89.71590 * 5 4 3
7 7 C 1.46905 * 111.00039 * 179.97438 * 6 5 4
8 8 H 1.08996 * 110.63987 * 323.31585 * 7 6 5
9 9 C 1.55158 * 110.71730 * 86.45133 * 7 6 5
10 10 C 1.54910 * 101.58312 * 153.86716 * 9 7 6
11 11 N 1.47428 * 104.83146 * 322.99212 * 10 9 7
12 12 C 1.34771 * 125.64926 * 204.09333 * 11 10 9
13 13 O 1.21288 * 119.99896 * 180.02562 * 12 11 10
14 14 C 1.50703 * 120.00048 * 0.02562 * 12 11 10
15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 11
16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12
17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14
18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14
19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15
20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15
21 21 H 1.48501 * 109.46922 * 269.71945 * 20 18 16
22 22 H 1.48496 * 109.47354 * 29.72142 * 20 18 16
23 23 H 1.48501 * 109.47428 * 149.72250 * 20 18 16
24 24 C 1.47023 * 108.70192 * 24.35086 * 11 10 9
25 25 H 1.09003 * 109.87997 * 118.13077 * 24 11 10
26 26 C 1.52997 * 109.88662 * 239.29592 * 24 11 10
27 27 O 1.34041 * 106.44949 * 359.64745 * 4 3 2
28 28 N 1.20923 * 111.56230 * 0.23936 * 27 4 3
29 29 H 1.09008 * 109.46702 * 270.29012 * 1 2 3
30 30 H 1.08998 * 109.47407 * 30.28897 * 1 2 3
31 31 H 1.09001 * 109.47082 * 150.29181 * 1 2 3
32 32 H 1.07999 * 128.00613 * 0.02562 * 3 2 1
33 33 H 1.08998 * 109.47159 * 329.71242 * 5 4 3
34 34 H 1.09002 * 109.46912 * 209.70967 * 5 4 3
35 35 H 1.00903 * 111.00049 * 303.94804 * 6 5 4
36 36 H 1.09005 * 111.00475 * 35.79410 * 9 7 6
37 37 H 1.09002 * 111.03965 * 271.95827 * 9 7 6
38 38 H 1.08998 * 110.36610 * 204.15436 * 10 9 7
39 39 H 1.08996 * 110.36735 * 81.82743 * 10 9 7
40 40 H 1.09000 * 109.46926 * 60.00592 * 14 12 11
41 41 H 1.09001 * 109.47144 * 300.00330 * 14 12 11
42 42 H 0.97005 * 119.99723 * 180.02562 * 19 18 16
43 43 H 1.09009 * 109.46700 * 58.54779 * 26 24 11
44 44 H 1.09002 * 109.47356 * 178.54853 * 26 24 11
45 45 H 1.08996 * 109.47236 * 298.54782 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3540 1.1321 0.0000
4 6 3.6025 0.6069 -0.0022
5 6 4.9022 1.3697 -0.0051
6 7 5.3236 1.6242 1.3789
7 6 6.5904 2.3671 1.4153
8 1 7.2493 2.0428 0.6099
9 6 6.3332 3.8950 1.3325
10 6 7.5864 4.4606 2.0462
11 7 7.8586 3.5104 3.1402
12 6 8.5288 3.7907 4.2753
13 8 8.6948 2.9269 5.1105
14 6 9.0719 5.1772 4.5070
15 16 9.9148 5.2352 6.1077
16 6 10.4342 6.9189 6.1190
17 1 10.1994 7.5622 5.2838
18 6 11.1452 7.4186 7.2013
19 7 11.4310 6.6348 8.2195
20 14 11.6892 9.2056 7.2168
21 1 13.0373 9.3179 6.6043
22 1 10.7231 10.0238 6.4407
23 1 11.7396 9.6956 8.6177
24 6 7.2832 2.2050 2.7848
25 1 8.0739 1.4577 2.7162
26 6 6.2562 1.7848 3.8381
27 8 3.4538 -0.7253 0.0046
28 7 2.2869 -1.0422 0.0057
29 1 -0.3633 0.0052 1.0277
30 1 -0.3634 0.8873 -0.5183
31 1 -0.3633 -0.8926 -0.5093
32 1 2.0709 2.1744 0.0004
33 1 4.7654 2.3186 -0.5236
34 1 5.6663 0.7835 -0.5156
35 1 4.6040 2.1105 1.8924
36 1 5.4230 4.1675 1.8668
37 1 6.2900 4.2289 0.2958
38 1 7.3789 5.4523 2.4480
39 1 8.4305 4.4982 1.3577
40 1 8.2512 5.8944 4.5020
41 1 9.7783 5.4277 3.7155
42 1 11.9276 6.9841 8.9761
43 1 5.4734 2.5406 3.9041
44 1 5.8154 0.8289 3.5549
45 1 6.7479 1.6856 4.8058
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001178147847.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:37
Heat of formation + Delta-G solvation = 33.337074 kcal
Electronic energy + Delta-G solvation = -26299.617605 eV
Core-core repulsion = 22446.906295 eV
Total energy + Delta-G solvation = -3852.711311 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-45.26931 -40.27633 -37.97131 -35.76484 -35.09958 -32.74876 -32.43466 -31.37641
-30.50360 -29.08294 -28.48561 -26.29198 -25.49939 -24.95419 -23.40186 -23.02697
-20.84202 -20.48393 -18.92598 -17.99899 -17.90991 -17.60173 -16.68499 -16.33762
-15.84416 -15.23783 -15.14022 -14.81504 -14.73268 -14.46189 -14.00889 -13.87316
-13.77317 -13.49711 -13.37525 -13.29307 -12.95429 -12.75389 -12.61264 -12.58712
-12.42995 -12.17122 -11.85629 -11.53233 -11.47760 -11.07390 -11.03391 -11.02991
-10.89562 -10.76433 -10.39217 -9.88824 -9.81723 -9.31570 -9.07267 -8.93332
-8.50895 -8.23403 -6.50522 -6.22202 -3.92802 1.03569 1.82014 2.65351
2.88623 3.08409 3.21401 3.24532 3.29248 3.55914 3.72127 3.80035
4.00034 4.19328 4.24519 4.28720 4.55463 4.60742 4.69828 4.76477
4.92854 4.99315 5.02501 5.03974 5.06542 5.09866 5.12871 5.32137
5.33886 5.38632 5.42080 5.48115 5.51096 5.63061 5.68931 5.70400
5.88246 5.92301 6.08957 6.12599 6.36755 6.43255 6.59292 6.79443
7.58604 7.68962 7.91994 8.34374 8.59063 9.22945 10.85181
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.030572 B = 0.001815 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.664320 B =15424.641742 C =15613.590511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.013 3.987
3 C -0.229 4.229
4 C -0.019 4.019
5 C 0.137 3.863
6 N -0.671 5.671
7 C 0.083 3.917
8 H 0.099 0.901
9 C -0.165 4.165
10 C 0.104 3.896
11 N -0.625 5.625
12 C 0.550 3.450
13 O -0.511 6.511
14 C -0.147 4.147
15 S -0.060 6.060
16 C -0.536 4.536
17 H 0.072 0.928
18 C 0.074 3.926
19 N -0.867 5.867
20 Si 0.919 3.081
21 H -0.277 1.277
22 H -0.272 1.272
23 H -0.282 1.282
24 C 0.147 3.853
25 H 0.078 0.922
26 C -0.155 4.155
27 O 0.110 5.890
28 N -0.365 5.365
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.075 0.925
32 H 0.170 0.830
33 H 0.069 0.931
34 H 0.100 0.900
35 H 0.351 0.649
36 H 0.078 0.922
37 H 0.083 0.917
38 H 0.079 0.921
39 H 0.070 0.930
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.268 0.732
43 H 0.046 0.954
44 H 0.075 0.925
45 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.932 -8.010 -22.030 30.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.146 4.146
3 C -0.251 4.251
4 C -0.083 4.083
5 C 0.007 3.993
6 N -0.303 5.303
7 C -0.027 4.027
8 H 0.117 0.883
9 C -0.205 4.205
10 C -0.020 4.020
11 N -0.363 5.363
12 C 0.338 3.662
13 O -0.385 6.385
14 C -0.298 4.298
15 S 0.167 5.833
16 C -0.684 4.684
17 H 0.090 0.910
18 C -0.136 4.136
19 N -0.502 5.502
20 Si 0.745 3.255
21 H -0.203 1.203
22 H -0.197 1.197
23 H -0.207 1.207
24 C 0.043 3.957
25 H 0.096 0.904
26 C -0.213 4.213
27 O 0.043 5.957
28 N -0.068 5.068
29 H 0.099 0.901
30 H 0.100 0.900
31 H 0.094 0.906
32 H 0.187 0.813
33 H 0.087 0.913
34 H 0.118 0.882
35 H 0.172 0.828
36 H 0.097 0.903
37 H 0.101 0.899
38 H 0.097 0.903
39 H 0.088 0.912
40 H 0.105 0.895
41 H 0.106 0.894
42 H 0.078 0.922
43 H 0.065 0.935
44 H 0.094 0.906
45 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -18.488 -11.253 -20.440 29.769
hybrid contribution -0.260 4.035 -1.260 4.235
sum -18.748 -7.218 -21.700 29.572
Atomic orbital electron populations
1.20173 0.85947 1.03745 1.03509 1.23609 0.99110 0.88808 1.03024
1.22455 0.91299 1.01162 1.10192 1.24303 0.97682 0.84002 1.02351
1.20352 0.90351 0.97110 0.91480 1.60421 1.05698 1.52509 1.11647
1.22634 0.91251 0.90792 0.98046 0.88270 1.23531 0.98878 0.96723
1.01331 1.22176 0.96584 0.94020 0.89235 1.48606 1.57162 1.11498
1.19025 1.19978 0.76652 0.90117 0.79427 1.90702 1.56470 1.48496
1.42797 1.23516 1.03648 0.95283 1.07309 1.85415 1.68541 1.15364
1.13986 1.22860 1.41643 0.96044 1.07840 0.90976 1.24992 0.95210
0.98787 0.94582 1.70022 1.37375 1.35717 1.07102 0.86172 0.78990
0.82783 0.77572 1.20269 1.19725 1.20737 1.21353 0.95552 0.85680
0.93149 0.90412 1.21973 0.98146 1.01533 0.99636 1.84852 1.21399
1.22661 1.66816 1.73880 0.89394 1.24188 1.19387 0.90076 0.90031
0.90561 0.81257 0.91290 0.88188 0.82841 0.90336 0.89853 0.90257
0.91211 0.89461 0.89396 0.92175 0.93475 0.90616 0.91169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16
2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16
3 C -0.23 -1.52 11.06 -39.38 -0.44 -1.95 16
4 C -0.02 -0.14 7.00 -35.30 -0.25 -0.38 16
5 C 0.14 0.67 6.10 -4.98 -0.03 0.64 16
6 N -0.67 -4.35 4.87 -106.05 -0.52 -4.87 16
7 C 0.08 0.60 3.10 -65.87 -0.20 0.39 16
8 H 0.10 0.60 7.89 -51.93 -0.41 0.19 16
9 C -0.16 -1.04 6.63 -24.58 -0.16 -1.20 16
10 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16
11 N -0.62 -8.55 3.08 -163.01 -0.50 -9.05 16
12 C 0.55 10.41 7.65 -10.99 -0.08 10.33 16
13 O -0.51 -11.67 14.75 5.55 0.08 -11.58 16
14 C -0.15 -2.98 5.16 36.01 0.19 -2.79 16
15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
16 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16
17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16
19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16
20 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16
21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
24 C 0.15 1.69 3.49 -66.95 -0.23 1.46 16
25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
26 C -0.15 -1.91 8.19 37.16 0.30 -1.61 16
27 O 0.11 1.10 11.20 17.17 0.19 1.29 16
28 N -0.36 -3.92 12.07 33.42 0.40 -3.52 16
29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16
30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16
31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16
33 H 0.07 0.21 8.13 -51.93 -0.42 -0.21 16
34 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16
35 H 0.35 2.24 7.53 -39.29 -0.30 1.95 16
36 H 0.08 0.50 7.81 -51.93 -0.41 0.10 16
37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16
41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16
42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16
43 H 0.05 0.55 7.84 -51.92 -0.41 0.14 16
44 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16
45 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16
LS Contribution 386.49 15.07 5.82 5.82
Total: -1.00 -35.61 386.49 -8.79 -44.40
By element:
Atomic # 1 Polarization: 4.82 SS G_CDS: -6.82 Total: -2.00 kcal
Atomic # 6 Polarization: -6.62 SS G_CDS: -0.95 Total: -7.57 kcal
Atomic # 7 Polarization: -42.92 SS G_CDS: 0.12 Total: -42.80 kcal
Atomic # 8 Polarization: -10.56 SS G_CDS: 0.27 Total: -10.29 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -35.61 -8.79 -44.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178147847.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.741 kcal
(2) G-P(sol) polarization free energy of solvation -35.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds