Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41385 * 126.79913 * 2 1 4 4 C 1.35450 * 103.98167 * 180.09408 * 3 2 1 5 5 C 1.50704 * 126.77302 * 179.90602 * 4 3 2 6 6 N 1.46895 * 109.46829 * 89.71590 * 5 4 3 7 7 C 1.46905 * 111.00039 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.63987 * 323.31585 * 7 6 5 9 9 C 1.55158 * 110.71730 * 86.45133 * 7 6 5 10 10 C 1.54910 * 101.58312 * 153.86716 * 9 7 6 11 11 N 1.47428 * 104.83146 * 322.99212 * 10 9 7 12 12 C 1.34771 * 125.64926 * 204.09333 * 11 10 9 13 13 O 1.21288 * 119.99896 * 180.02562 * 12 11 10 14 14 C 1.50703 * 120.00048 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71945 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72142 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72250 * 20 18 16 24 24 C 1.47023 * 108.70192 * 24.35086 * 11 10 9 25 25 H 1.09003 * 109.87997 * 118.13077 * 24 11 10 26 26 C 1.52997 * 109.88662 * 239.29592 * 24 11 10 27 27 O 1.34041 * 106.44949 * 359.64745 * 4 3 2 28 28 N 1.20923 * 111.56230 * 0.23936 * 27 4 3 29 29 H 1.09008 * 109.46702 * 270.29012 * 1 2 3 30 30 H 1.08998 * 109.47407 * 30.28897 * 1 2 3 31 31 H 1.09001 * 109.47082 * 150.29181 * 1 2 3 32 32 H 1.07999 * 128.00613 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47159 * 329.71242 * 5 4 3 34 34 H 1.09002 * 109.46912 * 209.70967 * 5 4 3 35 35 H 1.00903 * 111.00049 * 303.94804 * 6 5 4 36 36 H 1.09005 * 111.00475 * 35.79410 * 9 7 6 37 37 H 1.09002 * 111.03965 * 271.95827 * 9 7 6 38 38 H 1.08998 * 110.36610 * 204.15436 * 10 9 7 39 39 H 1.08996 * 110.36735 * 81.82743 * 10 9 7 40 40 H 1.09000 * 109.46926 * 60.00592 * 14 12 11 41 41 H 1.09001 * 109.47144 * 300.00330 * 14 12 11 42 42 H 0.97005 * 119.99723 * 180.02562 * 19 18 16 43 43 H 1.09009 * 109.46700 * 58.54779 * 26 24 11 44 44 H 1.09002 * 109.47356 * 178.54853 * 26 24 11 45 45 H 1.08996 * 109.47236 * 298.54782 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 -0.0022 5 6 4.9022 1.3697 -0.0051 6 7 5.3236 1.6242 1.3789 7 6 6.5904 2.3671 1.4153 8 1 7.2493 2.0428 0.6099 9 6 6.3332 3.8950 1.3325 10 6 7.5864 4.4606 2.0462 11 7 7.8586 3.5104 3.1402 12 6 8.5288 3.7907 4.2753 13 8 8.6948 2.9269 5.1105 14 6 9.0719 5.1772 4.5070 15 16 9.9148 5.2352 6.1077 16 6 10.4342 6.9189 6.1190 17 1 10.1994 7.5622 5.2838 18 6 11.1452 7.4186 7.2013 19 7 11.4310 6.6348 8.2195 20 14 11.6892 9.2056 7.2168 21 1 13.0373 9.3179 6.6043 22 1 10.7231 10.0238 6.4407 23 1 11.7396 9.6956 8.6177 24 6 7.2832 2.2050 2.7848 25 1 8.0739 1.4577 2.7162 26 6 6.2562 1.7848 3.8381 27 8 3.4538 -0.7253 0.0046 28 7 2.2869 -1.0422 0.0057 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 2.0709 2.1744 0.0004 33 1 4.7654 2.3186 -0.5236 34 1 5.6663 0.7835 -0.5156 35 1 4.6040 2.1105 1.8924 36 1 5.4230 4.1675 1.8668 37 1 6.2900 4.2289 0.2958 38 1 7.3789 5.4523 2.4480 39 1 8.4305 4.4982 1.3577 40 1 8.2512 5.8944 4.5020 41 1 9.7783 5.4277 3.7155 42 1 11.9276 6.9841 8.9761 43 1 5.4734 2.5406 3.9041 44 1 5.8154 0.8289 3.5549 45 1 6.7479 1.6856 4.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = 33.337074 kcal Electronic energy + Delta-G solvation = -26299.617605 eV Core-core repulsion = 22446.906295 eV Total energy + Delta-G solvation = -3852.711311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.26931 -40.27633 -37.97131 -35.76484 -35.09958 -32.74876 -32.43466 -31.37641 -30.50360 -29.08294 -28.48561 -26.29198 -25.49939 -24.95419 -23.40186 -23.02697 -20.84202 -20.48393 -18.92598 -17.99899 -17.90991 -17.60173 -16.68499 -16.33762 -15.84416 -15.23783 -15.14022 -14.81504 -14.73268 -14.46189 -14.00889 -13.87316 -13.77317 -13.49711 -13.37525 -13.29307 -12.95429 -12.75389 -12.61264 -12.58712 -12.42995 -12.17122 -11.85629 -11.53233 -11.47760 -11.07390 -11.03391 -11.02991 -10.89562 -10.76433 -10.39217 -9.88824 -9.81723 -9.31570 -9.07267 -8.93332 -8.50895 -8.23403 -6.50522 -6.22202 -3.92802 1.03569 1.82014 2.65351 2.88623 3.08409 3.21401 3.24532 3.29248 3.55914 3.72127 3.80035 4.00034 4.19328 4.24519 4.28720 4.55463 4.60742 4.69828 4.76477 4.92854 4.99315 5.02501 5.03974 5.06542 5.09866 5.12871 5.32137 5.33886 5.38632 5.42080 5.48115 5.51096 5.63061 5.68931 5.70400 5.88246 5.92301 6.08957 6.12599 6.36755 6.43255 6.59292 6.79443 7.58604 7.68962 7.91994 8.34374 8.59063 9.22945 10.85181 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.001815 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.664320 B =15424.641742 C =15613.590511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.229 4.229 4 C -0.019 4.019 5 C 0.137 3.863 6 N -0.671 5.671 7 C 0.083 3.917 8 H 0.099 0.901 9 C -0.165 4.165 10 C 0.104 3.896 11 N -0.625 5.625 12 C 0.550 3.450 13 O -0.511 6.511 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.282 1.282 24 C 0.147 3.853 25 H 0.078 0.922 26 C -0.155 4.155 27 O 0.110 5.890 28 N -0.365 5.365 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.351 0.649 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.932 -8.010 -22.030 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.251 4.251 4 C -0.083 4.083 5 C 0.007 3.993 6 N -0.303 5.303 7 C -0.027 4.027 8 H 0.117 0.883 9 C -0.205 4.205 10 C -0.020 4.020 11 N -0.363 5.363 12 C 0.338 3.662 13 O -0.385 6.385 14 C -0.298 4.298 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.197 1.197 23 H -0.207 1.207 24 C 0.043 3.957 25 H 0.096 0.904 26 C -0.213 4.213 27 O 0.043 5.957 28 N -0.068 5.068 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.187 0.813 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.172 0.828 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.488 -11.253 -20.440 29.769 hybrid contribution -0.260 4.035 -1.260 4.235 sum -18.748 -7.218 -21.700 29.572 Atomic orbital electron populations 1.20173 0.85947 1.03745 1.03509 1.23609 0.99110 0.88808 1.03024 1.22455 0.91299 1.01162 1.10192 1.24303 0.97682 0.84002 1.02351 1.20352 0.90351 0.97110 0.91480 1.60421 1.05698 1.52509 1.11647 1.22634 0.91251 0.90792 0.98046 0.88270 1.23531 0.98878 0.96723 1.01331 1.22176 0.96584 0.94020 0.89235 1.48606 1.57162 1.11498 1.19025 1.19978 0.76652 0.90117 0.79427 1.90702 1.56470 1.48496 1.42797 1.23516 1.03648 0.95283 1.07309 1.85415 1.68541 1.15364 1.13986 1.22860 1.41643 0.96044 1.07840 0.90976 1.24992 0.95210 0.98787 0.94582 1.70022 1.37375 1.35717 1.07102 0.86172 0.78990 0.82783 0.77572 1.20269 1.19725 1.20737 1.21353 0.95552 0.85680 0.93149 0.90412 1.21973 0.98146 1.01533 0.99636 1.84852 1.21399 1.22661 1.66816 1.73880 0.89394 1.24188 1.19387 0.90076 0.90031 0.90561 0.81257 0.91290 0.88188 0.82841 0.90336 0.89853 0.90257 0.91211 0.89461 0.89396 0.92175 0.93475 0.90616 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.23 -1.52 11.06 -39.38 -0.44 -1.95 16 4 C -0.02 -0.14 7.00 -35.30 -0.25 -0.38 16 5 C 0.14 0.67 6.10 -4.98 -0.03 0.64 16 6 N -0.67 -4.35 4.87 -106.05 -0.52 -4.87 16 7 C 0.08 0.60 3.10 -65.87 -0.20 0.39 16 8 H 0.10 0.60 7.89 -51.93 -0.41 0.19 16 9 C -0.16 -1.04 6.63 -24.58 -0.16 -1.20 16 10 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16 11 N -0.62 -8.55 3.08 -163.01 -0.50 -9.05 16 12 C 0.55 10.41 7.65 -10.99 -0.08 10.33 16 13 O -0.51 -11.67 14.75 5.55 0.08 -11.58 16 14 C -0.15 -2.98 5.16 36.01 0.19 -2.79 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.15 1.69 3.49 -66.95 -0.23 1.46 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 C -0.15 -1.91 8.19 37.16 0.30 -1.61 16 27 O 0.11 1.10 11.20 17.17 0.19 1.29 16 28 N -0.36 -3.92 12.07 33.42 0.40 -3.52 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.07 0.21 8.13 -51.93 -0.42 -0.21 16 34 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.35 2.24 7.53 -39.29 -0.30 1.95 16 36 H 0.08 0.50 7.81 -51.93 -0.41 0.10 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.77 7.48 -51.93 -0.39 0.38 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.05 0.55 7.84 -51.92 -0.41 0.14 16 44 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 45 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -35.61 386.49 -8.79 -44.40 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.82 Total: -2.00 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.95 Total: -7.57 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.12 Total: -42.80 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.27 Total: -10.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.61 -8.79 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.741 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds