Wall clock time and date at job start Tue Mar 31 2020 22:15:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.41385 * 126.79913 * 2 1
4 4 C 1.35450 * 103.98167 * 180.09408 * 3 2 1
5 5 C 1.50704 * 126.77302 * 179.90602 * 4 3 2
6 6 N 1.46895 * 109.46829 * 89.71590 * 5 4 3
7 7 C 1.46905 * 111.00039 * 179.97438 * 6 5 4
8 8 H 1.08996 * 110.63987 * 323.31585 * 7 6 5
9 9 C 1.55158 * 110.71730 * 86.45133 * 7 6 5
10 10 C 1.54910 * 101.58312 * 153.86716 * 9 7 6
11 11 N 1.47428 * 104.83146 * 322.99212 * 10 9 7
12 12 C 1.34771 * 125.64926 * 204.09333 * 11 10 9
13 13 O 1.21288 * 119.99896 * 180.02562 * 12 11 10
14 14 C 1.50703 * 120.00048 * 0.02562 * 12 11 10
15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 11
16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12
17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14
18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14
19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15
20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15
21 21 H 1.48501 * 109.46922 * 269.71945 * 20 18 16
22 22 H 1.48496 * 109.47354 * 29.72142 * 20 18 16
23 23 H 1.48501 * 109.47428 * 149.72250 * 20 18 16
24 24 C 1.47023 * 108.70192 * 24.35086 * 11 10 9
25 25 H 1.09003 * 109.87997 * 118.13077 * 24 11 10
26 26 C 1.52997 * 109.88662 * 239.29592 * 24 11 10
27 27 O 1.34041 * 106.44949 * 359.64745 * 4 3 2
28 28 N 1.20923 * 111.56230 * 0.23936 * 27 4 3
29 29 H 1.09008 * 109.46702 * 270.29012 * 1 2 3
30 30 H 1.08998 * 109.47407 * 30.28897 * 1 2 3
31 31 H 1.09001 * 109.47082 * 150.29181 * 1 2 3
32 32 H 1.07999 * 128.00613 * 0.02562 * 3 2 1
33 33 H 1.08998 * 109.47159 * 329.71242 * 5 4 3
34 34 H 1.09002 * 109.46912 * 209.70967 * 5 4 3
35 35 H 1.00903 * 111.00049 * 303.94804 * 6 5 4
36 36 H 1.09005 * 111.00475 * 35.79410 * 9 7 6
37 37 H 1.09002 * 111.03965 * 271.95827 * 9 7 6
38 38 H 1.08998 * 110.36610 * 204.15436 * 10 9 7
39 39 H 1.08996 * 110.36735 * 81.82743 * 10 9 7
40 40 H 1.09000 * 109.46926 * 60.00592 * 14 12 11
41 41 H 1.09001 * 109.47144 * 300.00330 * 14 12 11
42 42 H 0.97005 * 119.99723 * 180.02562 * 19 18 16
43 43 H 1.09009 * 109.46700 * 58.54779 * 26 24 11
44 44 H 1.09002 * 109.47356 * 178.54853 * 26 24 11
45 45 H 1.08996 * 109.47236 * 298.54782 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3540 1.1321 0.0000
4 6 3.6025 0.6069 -0.0022
5 6 4.9022 1.3697 -0.0051
6 7 5.3236 1.6242 1.3789
7 6 6.5904 2.3671 1.4153
8 1 7.2493 2.0428 0.6099
9 6 6.3332 3.8950 1.3325
10 6 7.5864 4.4606 2.0462
11 7 7.8586 3.5104 3.1402
12 6 8.5288 3.7907 4.2753
13 8 8.6948 2.9269 5.1105
14 6 9.0719 5.1772 4.5070
15 16 9.9148 5.2352 6.1077
16 6 10.4342 6.9189 6.1190
17 1 10.1994 7.5622 5.2838
18 6 11.1452 7.4186 7.2013
19 7 11.4310 6.6348 8.2195
20 14 11.6892 9.2056 7.2168
21 1 13.0373 9.3179 6.6043
22 1 10.7231 10.0238 6.4407
23 1 11.7396 9.6956 8.6177
24 6 7.2832 2.2050 2.7848
25 1 8.0739 1.4577 2.7162
26 6 6.2562 1.7848 3.8381
27 8 3.4538 -0.7253 0.0046
28 7 2.2869 -1.0422 0.0057
29 1 -0.3633 0.0052 1.0277
30 1 -0.3634 0.8873 -0.5183
31 1 -0.3633 -0.8926 -0.5093
32 1 2.0709 2.1744 0.0004
33 1 4.7654 2.3186 -0.5236
34 1 5.6663 0.7835 -0.5156
35 1 4.6040 2.1105 1.8924
36 1 5.4230 4.1675 1.8668
37 1 6.2900 4.2289 0.2958
38 1 7.3789 5.4523 2.4480
39 1 8.4305 4.4982 1.3577
40 1 8.2512 5.8944 4.5020
41 1 9.7783 5.4277 3.7155
42 1 11.9276 6.9841 8.9761
43 1 5.4734 2.5406 3.9041
44 1 5.8154 0.8289 3.5549
45 1 6.7479 1.6856 4.8058
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001178147847.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:36
Heat of formation + Delta-G solvation = 8.794626 kcal
Electronic energy + Delta-G solvation = -26300.681846 eV
Core-core repulsion = 22446.906295 eV
Total energy + Delta-G solvation = -3853.775551 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.85667 -41.31744 -39.10292 -36.52810 -35.64698 -34.58666 -33.56876 -32.25541
-31.48705 -29.76936 -29.54171 -27.66488 -26.97278 -25.65146 -23.96142 -23.94226
-21.61021 -21.08211 -20.21236 -19.52619 -18.58759 -18.42589 -17.95934 -17.21626
-16.88541 -16.78553 -16.22446 -16.05660 -15.75703 -15.46699 -14.99880 -14.73009
-14.52244 -14.40805 -14.17930 -14.05227 -13.87251 -13.73454 -13.62320 -13.48507
-13.22763 -13.14579 -13.04073 -12.89096 -12.75927 -12.60464 -12.49630 -12.00920
-11.78976 -11.76102 -11.63349 -11.14248 -10.91748 -10.82371 -10.44984 -10.27299
-9.66873 -9.39313 -8.67856 -8.34590 -6.13328 0.49536 1.24345 1.29641
1.42740 1.45633 1.56324 1.61469 2.07354 2.23766 2.27690 2.99511
3.14422 3.25196 3.33582 3.49500 3.55215 3.67540 3.93511 4.06809
4.14223 4.20813 4.23676 4.29093 4.39405 4.40274 4.44081 4.48191
4.63250 4.66465 4.69360 4.70453 4.75710 4.83660 4.93999 4.99734
5.03221 5.10931 5.14546 5.28102 5.38173 5.41325 5.53273 5.91989
6.19547 6.31365 6.45386 7.06355 7.18426 7.35993 8.74672
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.030572 B = 0.001815 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.664320 B =15424.641742 C =15613.590511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.002 3.998
3 C -0.225 4.225
4 C -0.022 4.022
5 C 0.142 3.858
6 N -0.683 5.683
7 C 0.102 3.898
8 H 0.119 0.881
9 C -0.149 4.149
10 C 0.089 3.911
11 N -0.614 5.614
12 C 0.545 3.455
13 O -0.564 6.564
14 C -0.119 4.119
15 S -0.153 6.153
16 C -0.546 4.546
17 H 0.083 0.917
18 C 0.013 3.987
19 N -0.912 5.912
20 Si 1.000 3.000
21 H -0.267 1.267
22 H -0.257 1.257
23 H -0.278 1.278
24 C 0.137 3.863
25 H 0.060 0.940
26 C -0.144 4.144
27 O 0.083 5.917
28 N -0.406 5.406
29 H 0.086 0.914
30 H 0.104 0.896
31 H 0.072 0.928
32 H 0.199 0.801
33 H 0.102 0.898
34 H 0.106 0.894
35 H 0.353 0.647
36 H 0.082 0.918
37 H 0.121 0.879
38 H 0.080 0.920
39 H 0.088 0.912
40 H 0.105 0.895
41 H 0.106 0.894
42 H 0.271 0.729
43 H 0.055 0.945
44 H 0.085 0.915
45 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.314 -5.428 -25.402 32.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.156 4.156
3 C -0.247 4.247
4 C -0.087 4.087
5 C 0.013 3.987
6 N -0.315 5.315
7 C -0.009 4.009
8 H 0.137 0.863
9 C -0.188 4.188
10 C -0.033 4.033
11 N -0.350 5.350
12 C 0.333 3.667
13 O -0.443 6.443
14 C -0.270 4.270
15 S 0.074 5.926
16 C -0.693 4.693
17 H 0.101 0.899
18 C -0.192 4.192
19 N -0.548 5.548
20 Si 0.821 3.179
21 H -0.193 1.193
22 H -0.180 1.180
23 H -0.204 1.204
24 C 0.033 3.967
25 H 0.078 0.922
26 C -0.202 4.202
27 O 0.019 5.981
28 N -0.114 5.114
29 H 0.105 0.895
30 H 0.123 0.877
31 H 0.091 0.909
32 H 0.217 0.783
33 H 0.120 0.880
34 H 0.124 0.876
35 H 0.174 0.826
36 H 0.100 0.900
37 H 0.140 0.860
38 H 0.099 0.901
39 H 0.106 0.894
40 H 0.123 0.877
41 H 0.124 0.876
42 H 0.080 0.920
43 H 0.074 0.926
44 H 0.104 0.896
45 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -19.888 -8.666 -23.883 32.265
hybrid contribution 0.071 3.147 -0.303 3.163
sum -19.818 -5.519 -24.186 31.752
Atomic orbital electron populations
1.20306 0.84237 1.04730 1.04157 1.24240 1.00473 0.89040 1.01821
1.22840 0.90594 1.02042 1.09237 1.24821 0.99023 0.83139 1.01675
1.20489 0.89391 0.98246 0.90565 1.60273 1.05533 1.52671 1.13066
1.22453 0.91493 0.91838 0.95120 0.86261 1.23531 0.97056 0.95138
1.03080 1.22614 0.99147 0.93297 0.88258 1.48529 1.54810 1.13505
1.18107 1.19747 0.77318 0.89019 0.80612 1.90686 1.58891 1.49541
1.45146 1.23303 1.03700 0.97022 1.02943 1.85630 1.70295 1.16527
1.20172 1.23196 1.41747 0.95953 1.08437 0.89850 1.26153 0.95009
1.04124 0.93912 1.70196 1.38358 1.38255 1.08003 0.84937 0.78922
0.76150 0.77869 1.19256 1.18048 1.20358 1.21575 0.95178 0.84172
0.95729 0.92169 1.21840 0.98179 1.02463 0.97718 1.84797 1.21326
1.24319 1.67641 1.73882 0.90027 1.25860 1.21623 0.89512 0.87701
0.90927 0.78345 0.88009 0.87577 0.82626 0.89966 0.86027 0.90115
0.89408 0.87699 0.87619 0.92005 0.92593 0.89592 0.95645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.68 10.47 71.24 0.75 0.07 16
2 C 0.00 0.04 7.33 43.58 0.32 0.36 16
3 C -0.23 -2.36 11.06 22.40 0.25 -2.12 16
4 C -0.02 -0.27 7.00 25.04 0.18 -0.10 16
5 C 0.14 0.84 6.10 85.56 0.52 1.37 16
6 N -0.68 -6.62 4.87 -489.43 -2.39 -9.01 16
7 C 0.10 1.08 3.10 46.11 0.14 1.22 16
8 H 0.12 0.89 7.89 -2.39 -0.02 0.87 16
9 C -0.15 -1.13 6.63 31.99 0.21 -0.92 16
10 C 0.09 1.38 6.69 86.85 0.58 1.96 16
11 N -0.61 -16.09 3.08 -788.03 -2.43 -18.51 16
12 C 0.55 20.96 7.65 87.66 0.67 21.63 16
13 O -0.56 -27.24 14.75 -3.06 -0.05 -27.28 16
14 C -0.12 -4.79 5.16 71.24 0.37 -4.42 16
15 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16
16 C -0.55 -31.20 9.50 67.96 0.65 -30.55 16
17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16
18 C 0.01 0.72 5.49 84.86 0.47 1.19 16
19 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16
20 Si 1.00 43.37 29.55 68.60 2.03 45.40 16
21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16
23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16
24 C 0.14 3.02 3.49 45.34 0.16 3.18 16
25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
26 C -0.14 -3.59 8.19 71.98 0.59 -3.00 16
27 O 0.08 1.62 11.20 71.62 0.80 2.43 16
28 N -0.41 -8.69 12.07 -49.55 -0.60 -9.29 16
29 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16
30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16
31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16
32 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16
33 H 0.10 0.01 8.13 -2.39 -0.02 -0.01 16
34 H 0.11 0.55 8.08 -2.39 -0.02 0.53 16
35 H 0.35 3.30 7.53 -89.69 -0.68 2.62 16
36 H 0.08 0.64 7.81 -2.38 -0.02 0.62 16
37 H 0.12 0.15 8.14 -2.39 -0.02 0.14 16
38 H 0.08 1.27 7.48 -2.39 -0.02 1.26 16
39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.10 3.83 7.85 -2.39 -0.02 3.82 16
41 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16
42 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16
43 H 0.06 1.26 7.84 -2.38 -0.02 1.24 16
44 H 0.09 1.92 7.45 -2.39 -0.02 1.90 16
45 H 0.02 0.85 6.74 -2.39 -0.02 0.83 16
Total: -1.00 -84.23 386.49 2.67 -81.56
By element:
Atomic # 1 Polarization: 10.32 SS G_CDS: 0.33 Total: 10.64 kcal
Atomic # 6 Polarization: -15.97 SS G_CDS: 5.85 Total: -10.13 kcal
Atomic # 7 Polarization: -87.69 SS G_CDS: -5.12 Total: -92.81 kcal
Atomic # 8 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.86 kcal
Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal
Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal
Total: -84.23 2.67 -81.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178147847.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.351 kcal
(2) G-P(sol) polarization free energy of solvation -84.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds