Wall clock time and date at job start Tue Mar 31 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41385 * 126.79913 * 2 1 4 4 C 1.35450 * 103.98167 * 180.09408 * 3 2 1 5 5 C 1.50704 * 126.77302 * 179.90602 * 4 3 2 6 6 N 1.46895 * 109.46829 * 89.71590 * 5 4 3 7 7 C 1.46905 * 111.00039 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.63987 * 323.31585 * 7 6 5 9 9 C 1.55158 * 110.71730 * 86.45133 * 7 6 5 10 10 C 1.54910 * 101.58312 * 153.86716 * 9 7 6 11 11 N 1.47428 * 104.83146 * 322.99212 * 10 9 7 12 12 C 1.34771 * 125.64926 * 204.09333 * 11 10 9 13 13 O 1.21288 * 119.99896 * 180.02562 * 12 11 10 14 14 C 1.50703 * 120.00048 * 0.02562 * 12 11 10 15 15 S 1.81000 * 109.46826 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99509 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00431 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99884 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99976 * 180.27840 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71945 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72142 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72250 * 20 18 16 24 24 C 1.47023 * 108.70192 * 24.35086 * 11 10 9 25 25 H 1.09003 * 109.87997 * 118.13077 * 24 11 10 26 26 C 1.52997 * 109.88662 * 239.29592 * 24 11 10 27 27 O 1.34041 * 106.44949 * 359.64745 * 4 3 2 28 28 N 1.20923 * 111.56230 * 0.23936 * 27 4 3 29 29 H 1.09008 * 109.46702 * 270.29012 * 1 2 3 30 30 H 1.08998 * 109.47407 * 30.28897 * 1 2 3 31 31 H 1.09001 * 109.47082 * 150.29181 * 1 2 3 32 32 H 1.07999 * 128.00613 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47159 * 329.71242 * 5 4 3 34 34 H 1.09002 * 109.46912 * 209.70967 * 5 4 3 35 35 H 1.00903 * 111.00049 * 303.94804 * 6 5 4 36 36 H 1.09005 * 111.00475 * 35.79410 * 9 7 6 37 37 H 1.09002 * 111.03965 * 271.95827 * 9 7 6 38 38 H 1.08998 * 110.36610 * 204.15436 * 10 9 7 39 39 H 1.08996 * 110.36735 * 81.82743 * 10 9 7 40 40 H 1.09000 * 109.46926 * 60.00592 * 14 12 11 41 41 H 1.09001 * 109.47144 * 300.00330 * 14 12 11 42 42 H 0.97005 * 119.99723 * 180.02562 * 19 18 16 43 43 H 1.09009 * 109.46700 * 58.54779 * 26 24 11 44 44 H 1.09002 * 109.47356 * 178.54853 * 26 24 11 45 45 H 1.08996 * 109.47236 * 298.54782 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 -0.0022 5 6 4.9022 1.3697 -0.0051 6 7 5.3236 1.6242 1.3789 7 6 6.5904 2.3671 1.4153 8 1 7.2493 2.0428 0.6099 9 6 6.3332 3.8950 1.3325 10 6 7.5864 4.4606 2.0462 11 7 7.8586 3.5104 3.1402 12 6 8.5288 3.7907 4.2753 13 8 8.6948 2.9269 5.1105 14 6 9.0719 5.1772 4.5070 15 16 9.9148 5.2352 6.1077 16 6 10.4342 6.9189 6.1190 17 1 10.1994 7.5622 5.2838 18 6 11.1452 7.4186 7.2013 19 7 11.4310 6.6348 8.2195 20 14 11.6892 9.2056 7.2168 21 1 13.0373 9.3179 6.6043 22 1 10.7231 10.0238 6.4407 23 1 11.7396 9.6956 8.6177 24 6 7.2832 2.2050 2.7848 25 1 8.0739 1.4577 2.7162 26 6 6.2562 1.7848 3.8381 27 8 3.4538 -0.7253 0.0046 28 7 2.2869 -1.0422 0.0057 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 2.0709 2.1744 0.0004 33 1 4.7654 2.3186 -0.5236 34 1 5.6663 0.7835 -0.5156 35 1 4.6040 2.1105 1.8924 36 1 5.4230 4.1675 1.8668 37 1 6.2900 4.2289 0.2958 38 1 7.3789 5.4523 2.4480 39 1 8.4305 4.4982 1.3577 40 1 8.2512 5.8944 4.5020 41 1 9.7783 5.4277 3.7155 42 1 11.9276 6.9841 8.9761 43 1 5.4734 2.5406 3.9041 44 1 5.8154 0.8289 3.5549 45 1 6.7479 1.6856 4.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:36 Heat of formation + Delta-G solvation = 8.794626 kcal Electronic energy + Delta-G solvation = -26300.681846 eV Core-core repulsion = 22446.906295 eV Total energy + Delta-G solvation = -3853.775551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.85667 -41.31744 -39.10292 -36.52810 -35.64698 -34.58666 -33.56876 -32.25541 -31.48705 -29.76936 -29.54171 -27.66488 -26.97278 -25.65146 -23.96142 -23.94226 -21.61021 -21.08211 -20.21236 -19.52619 -18.58759 -18.42589 -17.95934 -17.21626 -16.88541 -16.78553 -16.22446 -16.05660 -15.75703 -15.46699 -14.99880 -14.73009 -14.52244 -14.40805 -14.17930 -14.05227 -13.87251 -13.73454 -13.62320 -13.48507 -13.22763 -13.14579 -13.04073 -12.89096 -12.75927 -12.60464 -12.49630 -12.00920 -11.78976 -11.76102 -11.63349 -11.14248 -10.91748 -10.82371 -10.44984 -10.27299 -9.66873 -9.39313 -8.67856 -8.34590 -6.13328 0.49536 1.24345 1.29641 1.42740 1.45633 1.56324 1.61469 2.07354 2.23766 2.27690 2.99511 3.14422 3.25196 3.33582 3.49500 3.55215 3.67540 3.93511 4.06809 4.14223 4.20813 4.23676 4.29093 4.39405 4.40274 4.44081 4.48191 4.63250 4.66465 4.69360 4.70453 4.75710 4.83660 4.93999 4.99734 5.03221 5.10931 5.14546 5.28102 5.38173 5.41325 5.53273 5.91989 6.19547 6.31365 6.45386 7.06355 7.18426 7.35993 8.74672 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.001815 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.664320 B =15424.641742 C =15613.590511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.002 3.998 3 C -0.225 4.225 4 C -0.022 4.022 5 C 0.142 3.858 6 N -0.683 5.683 7 C 0.102 3.898 8 H 0.119 0.881 9 C -0.149 4.149 10 C 0.089 3.911 11 N -0.614 5.614 12 C 0.545 3.455 13 O -0.564 6.564 14 C -0.119 4.119 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.278 1.278 24 C 0.137 3.863 25 H 0.060 0.940 26 C -0.144 4.144 27 O 0.083 5.917 28 N -0.406 5.406 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.199 0.801 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.353 0.647 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.314 -5.428 -25.402 32.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.156 4.156 3 C -0.247 4.247 4 C -0.087 4.087 5 C 0.013 3.987 6 N -0.315 5.315 7 C -0.009 4.009 8 H 0.137 0.863 9 C -0.188 4.188 10 C -0.033 4.033 11 N -0.350 5.350 12 C 0.333 3.667 13 O -0.443 6.443 14 C -0.270 4.270 15 S 0.074 5.926 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.180 1.180 23 H -0.204 1.204 24 C 0.033 3.967 25 H 0.078 0.922 26 C -0.202 4.202 27 O 0.019 5.981 28 N -0.114 5.114 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.217 0.783 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -19.888 -8.666 -23.883 32.265 hybrid contribution 0.071 3.147 -0.303 3.163 sum -19.818 -5.519 -24.186 31.752 Atomic orbital electron populations 1.20306 0.84237 1.04730 1.04157 1.24240 1.00473 0.89040 1.01821 1.22840 0.90594 1.02042 1.09237 1.24821 0.99023 0.83139 1.01675 1.20489 0.89391 0.98246 0.90565 1.60273 1.05533 1.52671 1.13066 1.22453 0.91493 0.91838 0.95120 0.86261 1.23531 0.97056 0.95138 1.03080 1.22614 0.99147 0.93297 0.88258 1.48529 1.54810 1.13505 1.18107 1.19747 0.77318 0.89019 0.80612 1.90686 1.58891 1.49541 1.45146 1.23303 1.03700 0.97022 1.02943 1.85630 1.70295 1.16527 1.20172 1.23196 1.41747 0.95953 1.08437 0.89850 1.26153 0.95009 1.04124 0.93912 1.70196 1.38358 1.38255 1.08003 0.84937 0.78922 0.76150 0.77869 1.19256 1.18048 1.20358 1.21575 0.95178 0.84172 0.95729 0.92169 1.21840 0.98179 1.02463 0.97718 1.84797 1.21326 1.24319 1.67641 1.73882 0.90027 1.25860 1.21623 0.89512 0.87701 0.90927 0.78345 0.88009 0.87577 0.82626 0.89966 0.86027 0.90115 0.89408 0.87699 0.87619 0.92005 0.92593 0.89592 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.47 71.24 0.75 0.07 16 2 C 0.00 0.04 7.33 43.58 0.32 0.36 16 3 C -0.23 -2.36 11.06 22.40 0.25 -2.12 16 4 C -0.02 -0.27 7.00 25.04 0.18 -0.10 16 5 C 0.14 0.84 6.10 85.56 0.52 1.37 16 6 N -0.68 -6.62 4.87 -489.43 -2.39 -9.01 16 7 C 0.10 1.08 3.10 46.11 0.14 1.22 16 8 H 0.12 0.89 7.89 -2.39 -0.02 0.87 16 9 C -0.15 -1.13 6.63 31.99 0.21 -0.92 16 10 C 0.09 1.38 6.69 86.85 0.58 1.96 16 11 N -0.61 -16.09 3.08 -788.03 -2.43 -18.51 16 12 C 0.55 20.96 7.65 87.66 0.67 21.63 16 13 O -0.56 -27.24 14.75 -3.06 -0.05 -27.28 16 14 C -0.12 -4.79 5.16 71.24 0.37 -4.42 16 15 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 16 C -0.55 -31.20 9.50 67.96 0.65 -30.55 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.72 5.49 84.86 0.47 1.19 16 19 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 20 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.14 3.02 3.49 45.34 0.16 3.18 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 C -0.14 -3.59 8.19 71.98 0.59 -3.00 16 27 O 0.08 1.62 11.20 71.62 0.80 2.43 16 28 N -0.41 -8.69 12.07 -49.55 -0.60 -9.29 16 29 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.10 0.01 8.13 -2.39 -0.02 -0.01 16 34 H 0.11 0.55 8.08 -2.39 -0.02 0.53 16 35 H 0.35 3.30 7.53 -89.69 -0.68 2.62 16 36 H 0.08 0.64 7.81 -2.38 -0.02 0.62 16 37 H 0.12 0.15 8.14 -2.39 -0.02 0.14 16 38 H 0.08 1.27 7.48 -2.39 -0.02 1.26 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 3.83 7.85 -2.39 -0.02 3.82 16 41 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 42 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 43 H 0.06 1.26 7.84 -2.38 -0.02 1.24 16 44 H 0.09 1.92 7.45 -2.39 -0.02 1.90 16 45 H 0.02 0.85 6.74 -2.39 -0.02 0.83 16 Total: -1.00 -84.23 386.49 2.67 -81.56 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.33 Total: 10.64 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.85 Total: -10.13 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -5.12 Total: -92.81 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.86 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -84.23 2.67 -81.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.351 kcal (2) G-P(sol) polarization free energy of solvation -84.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds