Wall clock time and date at job start Tue Mar 31 2020 22:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34041 * 126.77731 * 2 1 4 4 N 1.20920 * 111.56772 * 180.28430 * 3 2 1 5 5 C 1.30171 * 111.60542 * 359.76228 * 4 3 2 6 6 C 1.35448 * 126.77937 * 179.88423 * 2 1 3 7 7 C 1.50699 * 128.00569 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47325 * 79.69898 * 7 6 2 9 9 C 1.46897 * 111.00421 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.77955 * 323.21826 * 9 8 7 11 11 C 1.55153 * 110.72111 * 86.45283 * 9 8 7 12 12 C 1.54912 * 101.58230 * 153.86794 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.08998 * 109.88422 * 118.13138 * 26 13 12 28 28 C 1.53008 * 109.88280 * 239.29759 * 26 13 12 29 29 H 1.08993 * 109.47420 * 270.11210 * 1 2 3 30 30 H 1.09002 * 109.47302 * 30.11594 * 1 2 3 31 31 H 1.09005 * 109.47255 * 150.10819 * 1 2 3 32 32 H 1.07997 * 126.80236 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47155 * 319.70170 * 7 6 2 34 34 H 1.08998 * 109.47614 * 199.69901 * 7 6 2 35 35 H 1.00899 * 111.00279 * 303.95778 * 8 7 6 36 36 H 1.08994 * 111.00496 * 35.79389 * 11 9 8 37 37 H 1.09003 * 111.03753 * 271.95636 * 11 9 8 38 38 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 39 39 H 1.09001 * 110.46061 * 81.87930 * 12 11 9 40 40 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 41 41 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 42 42 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.46962 * 58.54512 * 28 26 13 44 44 H 1.08996 * 109.46997 * 178.54517 * 28 26 13 45 45 H 1.08993 * 109.46597 * 298.54448 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7564 -0.0056 5 6 3.6213 -0.5372 -0.0050 6 6 2.3179 -1.0849 0.0022 7 6 1.9224 -2.5390 0.0046 8 7 1.5554 -2.9490 -1.3575 9 6 1.1627 -4.3640 -1.3936 10 1 1.7733 -4.9524 -0.7087 11 6 -0.3443 -4.5241 -1.0612 12 6 -0.6846 -5.8482 -1.7898 13 7 0.1068 -5.8090 -3.0329 14 6 -0.1800 -6.4767 -4.1680 15 8 0.5453 -6.3700 -5.1342 16 6 -1.4020 -7.3560 -4.2367 17 16 -1.5112 -8.1100 -5.8785 18 6 -2.9855 -9.0552 -5.6837 19 1 -3.5181 -9.0373 -4.7444 20 6 -3.4621 -9.8226 -6.7374 21 7 -2.8126 -9.8447 -7.8821 22 14 -5.0254 -10.8240 -6.5311 23 1 -5.3181 -11.5504 -7.7928 24 1 -4.8449 -11.8018 -5.4280 25 1 -6.1557 -9.9166 -6.2082 26 6 1.2641 -4.9259 -2.8275 27 1 2.1880 -5.4930 -2.9411 28 6 1.2278 -3.7771 -3.8374 29 1 -0.3634 0.0020 1.0276 30 1 -0.3634 0.8889 -0.5156 31 1 -0.3634 -0.8910 -0.5122 32 1 4.5527 -1.0838 -0.0087 33 1 1.0705 -2.6828 0.6692 34 1 2.7605 -3.1430 0.3523 35 1 0.8232 -2.3613 -1.7271 36 1 -0.9241 -3.6950 -1.4666 37 1 -0.5001 -4.6184 0.0135 38 1 -1.7493 -5.8923 -2.0190 39 1 -0.3926 -6.7040 -1.1810 40 1 -2.2927 -6.7552 -4.0524 41 1 -1.3292 -8.1389 -3.4819 42 1 -2.0010 -9.3244 -7.9893 43 1 0.2982 -3.2200 -3.7207 44 1 2.0740 -3.1127 -3.6625 45 1 1.2852 -4.1803 -4.8484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:21 Heat of formation + Delta-G solvation = 28.029881 kcal Electronic energy + Delta-G solvation = -26653.981943 eV Core-core repulsion = 22801.040496 eV Total energy + Delta-G solvation = -3852.941448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.31983 -40.34357 -38.08689 -36.21708 -33.95151 -33.52529 -32.54286 -31.58833 -30.87874 -28.96682 -28.15653 -26.34398 -25.08722 -24.80506 -23.10800 -22.99910 -21.07688 -20.75841 -19.00636 -18.26993 -18.00865 -17.64774 -16.93338 -16.41452 -15.96631 -15.33886 -15.21793 -14.89730 -14.64205 -14.34639 -14.03312 -13.85529 -13.77565 -13.46123 -13.38548 -13.23826 -13.00748 -12.79370 -12.64763 -12.55110 -12.36380 -12.21044 -11.95636 -11.88304 -11.56188 -11.54165 -11.06291 -10.94352 -10.92445 -10.71221 -10.18975 -9.67402 -9.58711 -9.42974 -9.02978 -8.86109 -8.58931 -8.23505 -6.68720 -6.63529 -4.01523 1.01815 1.82515 2.65387 2.76221 2.97196 3.30604 3.36233 3.42240 3.56345 3.73061 3.91509 4.12488 4.17495 4.20892 4.27877 4.31765 4.55564 4.62997 4.83139 4.84597 4.91846 4.96369 4.99911 5.05056 5.10119 5.20917 5.25463 5.30227 5.33966 5.37436 5.42539 5.46111 5.50689 5.64234 5.65968 5.76657 5.85368 5.98933 6.03123 6.35045 6.42747 6.56014 6.83564 7.59571 7.86091 7.89755 8.47714 8.48695 9.25639 10.80337 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.001936 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.848959 B =14457.111181 C =14771.471106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.026 4.026 3 O 0.096 5.904 4 N -0.368 5.368 5 C 0.010 3.990 6 C -0.199 4.199 7 C 0.137 3.863 8 N -0.670 5.670 9 C 0.082 3.918 10 H 0.097 0.903 11 C -0.164 4.164 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.548 3.452 15 O -0.512 6.512 16 C -0.124 4.124 17 S -0.116 6.116 18 C -0.607 4.607 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.883 5.883 22 Si 1.084 2.916 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.146 3.854 27 H 0.076 0.924 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.190 0.810 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.346 0.654 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.278 0.722 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 18.070 22.433 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 O 0.031 5.969 4 N -0.072 5.072 5 C -0.169 4.169 6 C -0.203 4.203 7 C 0.008 3.992 8 N -0.301 5.301 9 C -0.028 4.028 10 H 0.115 0.885 11 C -0.204 4.204 12 C -0.021 4.021 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.386 6.386 16 C -0.275 4.275 17 S 0.111 5.889 18 C -0.755 4.755 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.517 5.517 22 Si 0.910 3.090 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.042 3.958 27 H 0.094 0.906 28 C -0.212 4.212 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.207 0.793 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.086 18.076 19.911 28.081 hybrid contribution -1.077 0.095 2.571 2.789 sum 7.010 18.171 22.482 29.744 Atomic orbital electron populations 1.20360 0.84105 1.04728 1.04176 1.24340 0.96206 0.86051 1.02448 1.84820 1.11461 1.33052 1.67547 1.73901 0.97018 1.16955 1.19294 1.24913 0.99797 0.90046 1.02177 1.20966 0.92400 0.96804 1.10144 1.20118 1.00464 0.88653 0.89962 1.60477 1.46433 1.02672 1.20552 1.22622 0.94170 0.89362 0.96691 0.88514 1.23516 0.97431 0.98424 1.00985 1.22193 0.96935 0.97244 0.85725 1.48570 1.27047 1.47894 1.12618 1.19945 0.86413 0.79118 0.80859 1.90700 1.50336 1.62851 1.34685 1.23297 0.97550 1.00806 1.05886 1.84834 1.35953 1.58086 1.10062 1.23685 1.11646 1.35482 1.04726 0.91670 1.26057 1.03393 0.96463 0.91648 1.70801 1.17607 1.38725 1.24594 0.83332 0.73688 0.75757 0.76235 1.20258 1.21143 1.21145 1.21375 0.89302 0.91237 0.93849 0.90561 1.21958 1.01792 0.97496 0.99912 0.89258 0.89436 0.89432 0.79276 0.93505 0.89315 0.83371 0.90421 0.89852 0.90302 0.91198 0.89201 0.89157 0.90973 0.93484 0.90597 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.30 36.00 0.37 0.13 16 2 C -0.03 -0.17 7.49 -35.31 -0.26 -0.43 16 3 O 0.10 0.86 11.20 17.17 0.19 1.06 16 4 N -0.37 -3.71 12.07 30.35 0.37 -3.34 16 5 C 0.01 0.08 12.16 -17.06 -0.21 -0.13 16 6 C -0.20 -1.33 5.84 -104.42 -0.61 -1.94 16 7 C 0.14 0.70 5.87 -4.98 -0.03 0.67 16 8 N -0.67 -4.28 4.88 -106.05 -0.52 -4.80 16 9 C 0.08 0.59 3.09 -65.88 -0.20 0.39 16 10 H 0.10 0.62 7.90 -51.93 -0.41 0.21 16 11 C -0.16 -1.03 6.63 -24.58 -0.16 -1.19 16 12 C 0.10 0.98 6.69 -2.53 -0.02 0.96 16 13 N -0.62 -8.46 3.08 -163.01 -0.50 -8.96 16 14 C 0.55 10.31 7.65 -10.98 -0.08 10.23 16 15 O -0.51 -11.58 14.75 5.55 0.08 -11.50 16 16 C -0.12 -2.52 5.16 36.01 0.19 -2.34 16 17 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 18 C -0.61 -17.44 9.50 30.94 0.29 -17.14 16 19 H 0.07 1.78 7.80 -52.49 -0.41 1.38 16 20 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 21 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 22 Si 1.08 24.77 29.92 -169.99 -5.09 19.69 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.15 1.67 3.49 -66.95 -0.23 1.44 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.15 -1.87 8.19 37.16 0.30 -1.56 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.20 7.48 -51.93 -0.39 -0.19 16 32 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.05 0.18 8.13 -51.93 -0.42 -0.24 16 34 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.35 2.16 6.95 -39.29 -0.27 1.88 16 36 H 0.08 0.48 7.81 -51.93 -0.41 0.07 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.70 7.85 -51.91 -0.41 1.29 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 42 H 0.28 8.84 7.12 -40.82 -0.29 8.54 16 43 H 0.05 0.53 7.84 -51.93 -0.41 0.13 16 44 H 0.08 0.84 7.45 -51.93 -0.39 0.45 16 45 H 0.07 1.08 6.74 -51.93 -0.35 0.74 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -36.13 383.59 -8.50 -44.63 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.71 Total: -0.63 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.75 Total: -9.99 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.11 Total: -43.81 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.27 Total: -10.44 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.69 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.13 -8.50 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.657 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds