Wall clock time and date at job start Tue Mar 31 2020 22:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34041 * 126.77731 * 2 1 4 4 N 1.20920 * 111.56772 * 180.28430 * 3 2 1 5 5 C 1.30171 * 111.60542 * 359.76228 * 4 3 2 6 6 C 1.35448 * 126.77937 * 179.88423 * 2 1 3 7 7 C 1.50699 * 128.00569 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47325 * 79.69898 * 7 6 2 9 9 C 1.46897 * 111.00421 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.77955 * 323.21826 * 9 8 7 11 11 C 1.55153 * 110.72111 * 86.45283 * 9 8 7 12 12 C 1.54912 * 101.58230 * 153.86794 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.08998 * 109.88422 * 118.13138 * 26 13 12 28 28 C 1.53008 * 109.88280 * 239.29759 * 26 13 12 29 29 H 1.08993 * 109.47420 * 270.11210 * 1 2 3 30 30 H 1.09002 * 109.47302 * 30.11594 * 1 2 3 31 31 H 1.09005 * 109.47255 * 150.10819 * 1 2 3 32 32 H 1.07997 * 126.80236 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47155 * 319.70170 * 7 6 2 34 34 H 1.08998 * 109.47614 * 199.69901 * 7 6 2 35 35 H 1.00899 * 111.00279 * 303.95778 * 8 7 6 36 36 H 1.08994 * 111.00496 * 35.79389 * 11 9 8 37 37 H 1.09003 * 111.03753 * 271.95636 * 11 9 8 38 38 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 39 39 H 1.09001 * 110.46061 * 81.87930 * 12 11 9 40 40 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 41 41 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 42 42 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.46962 * 58.54512 * 28 26 13 44 44 H 1.08996 * 109.46997 * 178.54517 * 28 26 13 45 45 H 1.08993 * 109.46597 * 298.54448 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7564 -0.0056 5 6 3.6213 -0.5372 -0.0050 6 6 2.3179 -1.0849 0.0022 7 6 1.9224 -2.5390 0.0046 8 7 1.5554 -2.9490 -1.3575 9 6 1.1627 -4.3640 -1.3936 10 1 1.7733 -4.9524 -0.7087 11 6 -0.3443 -4.5241 -1.0612 12 6 -0.6846 -5.8482 -1.7898 13 7 0.1068 -5.8090 -3.0329 14 6 -0.1800 -6.4767 -4.1680 15 8 0.5453 -6.3700 -5.1342 16 6 -1.4020 -7.3560 -4.2367 17 16 -1.5112 -8.1100 -5.8785 18 6 -2.9855 -9.0552 -5.6837 19 1 -3.5181 -9.0373 -4.7444 20 6 -3.4621 -9.8226 -6.7374 21 7 -2.8126 -9.8447 -7.8821 22 14 -5.0254 -10.8240 -6.5311 23 1 -5.3181 -11.5504 -7.7928 24 1 -4.8449 -11.8018 -5.4280 25 1 -6.1557 -9.9166 -6.2082 26 6 1.2641 -4.9259 -2.8275 27 1 2.1880 -5.4930 -2.9411 28 6 1.2278 -3.7771 -3.8374 29 1 -0.3634 0.0020 1.0276 30 1 -0.3634 0.8889 -0.5156 31 1 -0.3634 -0.8910 -0.5122 32 1 4.5527 -1.0838 -0.0087 33 1 1.0705 -2.6828 0.6692 34 1 2.7605 -3.1430 0.3523 35 1 0.8232 -2.3613 -1.7271 36 1 -0.9241 -3.6950 -1.4666 37 1 -0.5001 -4.6184 0.0135 38 1 -1.7493 -5.8923 -2.0190 39 1 -0.3926 -6.7040 -1.1810 40 1 -2.2927 -6.7552 -4.0524 41 1 -1.3292 -8.1389 -3.4819 42 1 -2.0010 -9.3244 -7.9893 43 1 0.2982 -3.2200 -3.7207 44 1 2.0740 -3.1127 -3.6625 45 1 1.2852 -4.1803 -4.8484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:21 Heat of formation + Delta-G solvation = 3.297790 kcal Electronic energy + Delta-G solvation = -26655.054407 eV Core-core repulsion = 22801.040496 eV Total energy + Delta-G solvation = -3854.013912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.88497 -41.38621 -39.18616 -36.92986 -34.75400 -34.67046 -34.02756 -32.56665 -31.77898 -30.11404 -28.75324 -27.10291 -26.98018 -25.72460 -24.00626 -23.52887 -21.65577 -21.54833 -20.53994 -19.86979 -18.59973 -18.36242 -18.00449 -17.38289 -17.01062 -16.54661 -16.16229 -15.93293 -15.68289 -15.50262 -15.19578 -14.79270 -14.71549 -14.44109 -14.05042 -14.01653 -13.97415 -13.74076 -13.69725 -13.65466 -13.42854 -13.20041 -13.06803 -12.73488 -12.69547 -12.53928 -12.06222 -11.95367 -11.79057 -11.71759 -11.54149 -11.29106 -11.09611 -10.92238 -10.32775 -10.14928 -9.73758 -9.31733 -8.92755 -8.88451 -6.28349 0.52637 1.14796 1.29217 1.51103 1.51835 1.60970 1.80969 2.00419 2.24047 2.34356 3.02182 3.09189 3.17314 3.40688 3.48525 3.58817 3.72204 3.84511 3.87955 4.06822 4.12912 4.16489 4.21836 4.31169 4.35163 4.41050 4.53790 4.64554 4.67865 4.70608 4.74921 4.79227 4.80559 4.87353 5.00252 5.04591 5.07043 5.11490 5.28447 5.34573 5.47886 5.63471 5.99992 6.13989 6.37034 6.37968 7.05927 7.08731 7.32464 8.50494 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.001936 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.848959 B =14457.111181 C =14771.471106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.023 4.023 3 O 0.075 5.925 4 N -0.406 5.406 5 C 0.002 3.998 6 C -0.205 4.205 7 C 0.144 3.856 8 N -0.679 5.679 9 C 0.100 3.900 10 H 0.114 0.886 11 C -0.148 4.148 12 C 0.088 3.912 13 N -0.612 5.612 14 C 0.544 3.456 15 O -0.564 6.564 16 C -0.098 4.098 17 S -0.198 6.198 18 C -0.612 4.612 19 H 0.076 0.924 20 C -0.020 4.020 21 N -0.913 5.913 22 Si 1.137 2.863 23 H -0.281 1.281 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.138 3.862 27 H 0.059 0.941 28 C -0.142 4.142 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.349 0.651 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 18.286 26.207 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 O 0.014 5.986 4 N -0.113 5.113 5 C -0.177 4.177 6 C -0.209 4.209 7 C 0.015 3.985 8 N -0.311 5.311 9 C -0.011 4.011 10 H 0.132 0.868 11 C -0.188 4.188 12 C -0.034 4.034 13 N -0.347 5.347 14 C 0.332 3.668 15 O -0.442 6.442 16 C -0.250 4.250 17 S 0.029 5.971 18 C -0.759 4.759 19 H 0.094 0.906 20 C -0.223 4.223 21 N -0.548 5.548 22 Si 0.954 3.046 23 H -0.206 1.206 24 H -0.187 1.187 25 H -0.186 1.186 26 C 0.034 3.966 27 H 0.077 0.923 28 C -0.201 4.201 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.221 0.779 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.223 18.344 23.767 30.661 hybrid contribution -0.416 0.132 1.500 1.562 sum 5.807 18.477 25.267 31.836 Atomic orbital electron populations 1.20568 0.81606 1.05677 1.05553 1.25015 0.97529 0.85389 1.00835 1.84773 1.11527 1.34212 1.68097 1.73896 0.97830 1.18217 1.21344 1.25346 1.01254 0.89806 1.01294 1.21170 0.91661 0.97756 1.10357 1.20153 1.01596 0.87398 0.89328 1.60357 1.46714 1.02175 1.21863 1.22442 0.95494 0.89837 0.93315 0.86795 1.23523 0.96135 0.96446 1.02671 1.22626 0.96533 1.00119 0.84099 1.48506 1.27823 1.46102 1.12283 1.19686 0.85664 0.79572 0.81889 1.90685 1.51754 1.64792 1.37009 1.23153 0.99353 1.01308 1.01169 1.85108 1.36277 1.59273 1.16449 1.24012 1.11667 1.35122 1.05137 0.90595 1.27875 1.06221 0.97324 0.90924 1.70922 1.17814 1.39934 1.26158 0.82720 0.70105 0.75003 0.76742 1.20633 1.18693 1.18647 1.21598 0.87713 0.90432 0.96851 0.92329 1.21829 1.02738 0.97852 0.97649 0.87507 0.89000 0.87947 0.77911 0.91081 0.88695 0.83104 0.89770 0.86259 0.90094 0.89528 0.87465 0.87496 0.92935 0.92540 0.89470 0.95774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.30 71.23 0.73 0.51 16 2 C -0.02 -0.25 7.49 25.04 0.19 -0.07 16 3 O 0.08 1.32 11.20 71.62 0.80 2.12 16 4 N -0.41 -8.12 12.07 -59.27 -0.72 -8.83 16 5 C 0.00 0.02 12.16 85.71 1.04 1.07 16 6 C -0.21 -2.24 5.84 -19.74 -0.12 -2.35 16 7 C 0.14 0.88 5.87 85.56 0.50 1.38 16 8 N -0.68 -6.23 4.88 -489.43 -2.39 -8.62 16 9 C 0.10 1.04 3.09 46.11 0.14 1.19 16 10 H 0.11 0.90 7.90 -2.38 -0.02 0.89 16 11 C -0.15 -1.09 6.63 31.99 0.21 -0.88 16 12 C 0.09 1.34 6.69 86.86 0.58 1.92 16 13 N -0.61 -15.68 3.08 -788.03 -2.43 -18.11 16 14 C 0.54 20.58 7.65 87.66 0.67 21.25 16 15 O -0.56 -26.74 14.75 -3.04 -0.04 -26.79 16 16 C -0.10 -3.95 5.16 71.24 0.37 -3.58 16 17 S -0.20 -11.00 19.60 -56.49 -1.11 -12.11 16 18 C -0.61 -35.21 9.50 67.95 0.65 -34.57 16 19 H 0.08 4.06 7.80 -2.92 -0.02 4.04 16 20 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 21 N -0.91 -58.27 13.67 21.65 0.30 -57.97 16 22 Si 1.14 48.85 29.92 68.60 2.05 50.91 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 C 0.14 2.95 3.49 45.35 0.16 3.11 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.14 -3.43 8.19 71.98 0.59 -2.84 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.02 7.48 -2.38 -0.02 0.01 16 32 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 34 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 35 H 0.35 3.02 6.95 -89.69 -0.62 2.39 16 36 H 0.08 0.59 7.81 -2.39 -0.02 0.57 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.08 1.24 7.48 -2.39 -0.02 1.22 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 3.90 7.85 -2.39 -0.02 3.88 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.26 17.30 7.12 -92.71 -0.66 16.63 16 43 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 44 H 0.09 1.86 7.45 -2.39 -0.02 1.84 16 45 H 0.02 0.79 6.74 -2.39 -0.02 0.77 16 Total: -1.00 -84.62 383.59 3.15 -81.47 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.49 Total: 12.50 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 6.19 Total: -14.58 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -5.23 Total: -93.52 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.05 Total: 50.91 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.11 Total: -12.11 kcal Total: -84.62 3.15 -81.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.770 kcal (2) G-P(sol) polarization free energy of solvation -84.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds