Wall clock time and date at job start Tue Mar 31 2020 22:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30181 * 126.80224 * 2 1 4 4 O 1.20923 * 111.60309 * 180.25524 * 3 2 1 5 5 C 1.34044 * 111.56743 * 359.74793 * 4 3 2 6 6 C 1.35450 * 106.44498 * 359.97438 * 5 4 3 7 7 C 1.50699 * 128.00434 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47325 * 260.02559 * 7 6 5 9 9 C 1.46897 * 111.00421 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.77955 * 323.21826 * 9 8 7 11 11 C 1.55153 * 110.72111 * 86.45283 * 9 8 7 12 12 C 1.54912 * 101.58230 * 153.86794 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.08998 * 109.88422 * 118.13138 * 26 13 12 28 28 C 1.53008 * 109.88280 * 239.29759 * 26 13 12 29 29 H 1.08996 * 109.46923 * 270.16414 * 1 2 3 30 30 H 1.09000 * 109.46751 * 30.16294 * 1 2 3 31 31 H 1.09000 * 109.47075 * 150.16463 * 1 2 3 32 32 H 1.07997 * 126.77624 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47155 * 140.02831 * 7 6 5 34 34 H 1.08998 * 109.47614 * 20.02562 * 7 6 5 35 35 H 1.00899 * 111.00279 * 303.95778 * 8 7 6 36 36 H 1.08994 * 111.00496 * 35.79389 * 11 9 8 37 37 H 1.09003 * 111.03753 * 271.95636 * 11 9 8 38 38 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 39 39 H 1.09001 * 110.46061 * 81.87930 * 12 11 9 40 40 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 41 41 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 42 42 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.46962 * 58.54512 * 28 26 13 44 44 H 1.08996 * 109.46997 * 178.54517 * 28 26 13 45 45 H 1.08993 * 109.46597 * 298.54448 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 2.3540 -1.1320 0.0037 7 6 1.9591 -2.5863 0.0076 8 7 1.5920 -2.9977 -1.3540 9 6 1.1999 -4.4130 -1.3888 10 1 1.8109 -5.0005 -0.7034 11 6 -0.3070 -4.5734 -1.0559 12 6 -0.6468 -5.8984 -1.7831 13 7 0.1443 -5.8600 -3.0265 14 6 -0.1424 -6.5289 -4.1608 15 8 0.5827 -6.4228 -5.1273 16 6 -1.3641 -7.4088 -4.2284 17 16 -1.4733 -8.1644 -5.8695 18 6 -2.9471 -9.1100 -5.6735 19 1 -3.4796 -9.0915 -4.7342 20 6 -3.4236 -9.8786 -6.7264 21 7 -2.7743 -9.9016 -7.8712 22 14 -4.9865 -10.8806 -6.5188 23 1 -5.2791 -11.6083 -7.7798 24 1 -4.8053 -11.8572 -5.4149 25 1 -6.1170 -9.9733 -6.1966 26 6 1.3012 -4.9762 -2.8221 27 1 2.2253 -5.5430 -2.9353 28 6 1.2642 -3.8283 -3.8331 29 1 -0.3633 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 4.5339 -1.1534 -0.0075 33 1 1.1074 -2.7298 0.6725 34 1 2.7975 -3.1896 0.3557 35 1 0.8595 -2.4107 -1.7241 36 1 -0.8872 -3.7449 -1.4620 37 1 -0.4625 -4.6667 0.0190 38 1 -1.7115 -5.9431 -2.0121 39 1 -0.3543 -6.7534 -1.1736 40 1 -2.2549 -6.8082 -4.0446 41 1 -1.2907 -8.1909 -3.4729 42 1 -1.9629 -9.3810 -7.9791 43 1 0.3345 -3.2715 -3.7167 44 1 2.1102 -3.1635 -3.6591 45 1 1.3217 -4.2325 -4.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178148557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:39 Heat of formation + Delta-G solvation = 27.087687 kcal Electronic energy + Delta-G solvation = -26637.031008 eV Core-core repulsion = 22784.048703 eV Total energy + Delta-G solvation = -3852.982304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.32519 -40.34012 -38.08375 -36.30920 -34.47106 -32.58848 -32.54104 -31.47282 -30.68166 -29.18661 -28.61515 -26.46513 -25.09196 -24.80325 -23.07983 -21.92833 -21.76756 -20.71986 -19.00481 -18.26979 -17.96410 -17.89058 -16.96309 -16.41253 -15.94772 -15.45909 -15.28725 -15.03585 -14.38457 -14.19231 -13.89273 -13.85322 -13.80868 -13.41925 -13.37180 -13.06737 -12.97090 -12.90113 -12.66748 -12.57958 -12.40267 -12.32469 -11.95990 -11.88325 -11.55599 -11.41632 -11.05984 -10.94473 -10.92561 -10.31270 -10.18812 -9.93445 -9.58753 -9.42969 -9.02822 -8.87213 -8.58822 -8.23398 -6.68565 -6.63399 -4.01362 1.09236 1.73483 2.74915 2.85916 2.97279 3.30769 3.36406 3.42302 3.56478 3.66575 3.82379 4.06304 4.19281 4.20478 4.26353 4.46198 4.52535 4.64443 4.86247 4.96085 4.96681 4.97949 4.99925 5.04011 5.21059 5.24107 5.26290 5.30850 5.34473 5.36840 5.42964 5.46452 5.50640 5.65172 5.66778 5.76944 5.85229 5.99202 6.03062 6.34978 6.42844 6.55913 6.83405 7.59651 7.87087 7.89963 8.47775 8.48841 9.25779 10.80477 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029355 B = 0.001936 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.615598 B =14462.623499 C =14776.543301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.366 5.366 4 O 0.097 5.903 5 C -0.038 4.038 6 C -0.200 4.200 7 C 0.136 3.864 8 N -0.670 5.670 9 C 0.082 3.918 10 H 0.097 0.903 11 C -0.164 4.164 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.548 3.452 15 O -0.512 6.512 16 C -0.124 4.124 17 S -0.116 6.116 18 C -0.607 4.607 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.883 5.883 22 Si 1.084 2.916 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.147 3.853 27 H 0.076 0.924 28 C -0.153 4.153 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.217 0.783 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.348 0.652 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.278 0.722 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 17.407 22.392 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 N -0.072 5.072 4 O 0.032 5.968 5 C -0.121 4.121 6 C -0.204 4.204 7 C 0.007 3.993 8 N -0.301 5.301 9 C -0.029 4.029 10 H 0.115 0.885 11 C -0.204 4.204 12 C -0.021 4.021 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.386 6.386 16 C -0.275 4.275 17 S 0.111 5.889 18 C -0.755 4.755 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.517 5.517 22 Si 0.910 3.090 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.043 3.957 27 H 0.095 0.905 28 C -0.212 4.212 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.234 0.766 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.747 17.694 19.878 28.341 hybrid contribution -0.902 0.012 2.580 2.733 sum 8.845 17.706 22.457 29.934 Atomic orbital electron populations 1.20170 0.86075 1.03828 1.03382 1.23540 0.98961 0.88550 1.02783 1.73871 0.89460 1.24206 1.19669 1.84835 1.21526 1.23130 1.67261 1.25846 1.00828 0.83441 1.01938 1.21127 0.92443 0.97051 1.09809 1.20110 1.00581 0.88447 0.90140 1.60497 1.46522 1.02678 1.20448 1.22622 0.94193 0.89357 0.96682 0.88524 1.23515 0.97448 0.98411 1.00997 1.22194 0.96946 0.97235 0.85720 1.48569 1.27079 1.47825 1.12654 1.19944 0.86402 0.79120 0.80857 1.90699 1.50339 1.62906 1.34639 1.23297 0.97560 1.00802 1.05887 1.84829 1.35984 1.57993 1.10125 1.23686 1.11685 1.35412 1.04752 0.91672 1.26057 1.03385 0.96467 0.91652 1.70801 1.17625 1.38732 1.24573 0.83332 0.73692 0.75757 0.76232 1.20256 1.21141 1.21148 1.21373 0.89307 0.91213 0.93845 0.90548 1.21959 1.01804 0.97498 0.99903 0.90123 0.90259 0.90392 0.76627 0.93446 0.89381 0.83235 0.90424 0.89861 0.90311 0.91189 0.89206 0.89153 0.90974 0.93496 0.90599 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.39 36.01 0.37 -0.06 16 2 C 0.02 0.17 7.33 -82.10 -0.60 -0.43 16 3 N -0.37 -3.64 12.07 33.43 0.40 -3.24 16 4 O 0.10 0.82 11.20 17.17 0.19 1.02 16 5 C -0.04 -0.22 12.26 29.74 0.36 0.14 16 6 C -0.20 -1.30 5.84 -104.42 -0.61 -1.90 16 7 C 0.14 0.68 6.03 -4.98 -0.03 0.65 16 8 N -0.67 -4.32 4.88 -106.05 -0.52 -4.84 16 9 C 0.08 0.59 3.09 -65.88 -0.20 0.39 16 10 H 0.10 0.61 7.90 -51.93 -0.41 0.20 16 11 C -0.16 -1.08 6.63 -24.58 -0.16 -1.25 16 12 C 0.10 0.99 6.69 -2.53 -0.02 0.98 16 13 N -0.62 -8.51 3.08 -163.01 -0.50 -9.02 16 14 C 0.55 10.35 7.65 -10.98 -0.08 10.27 16 15 O -0.51 -11.59 14.75 5.55 0.08 -11.51 16 16 C -0.12 -2.54 5.16 36.01 0.19 -2.35 16 17 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 18 C -0.61 -17.48 9.50 30.94 0.29 -17.19 16 19 H 0.06 1.79 7.80 -52.49 -0.41 1.38 16 20 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 21 N -0.88 -27.50 13.67 55.49 0.76 -26.75 16 22 Si 1.08 24.84 29.92 -169.99 -5.09 19.75 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.15 1.68 3.49 -66.95 -0.23 1.44 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 C -0.15 -1.87 8.19 37.16 0.30 -1.57 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.34 7.75 -51.93 -0.40 -0.06 16 32 H 0.22 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.05 0.21 8.13 -51.93 -0.42 -0.22 16 34 H 0.09 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.35 2.35 7.14 -39.29 -0.28 2.07 16 36 H 0.08 0.52 7.81 -51.93 -0.41 0.12 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.71 7.85 -51.91 -0.41 1.30 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.28 8.85 7.12 -40.82 -0.29 8.56 16 43 H 0.05 0.55 7.84 -51.93 -0.41 0.14 16 44 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 45 H 0.07 1.09 6.74 -51.93 -0.35 0.74 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -36.22 384.25 -8.24 -44.45 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.74 Total: -0.48 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.52 Total: -9.95 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.14 Total: -43.84 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.27 Total: -10.49 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.22 -8.24 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.543 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds