Wall clock time and date at job start Tue Mar 31 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30181 * 126.80224 * 2 1 4 4 O 1.20923 * 111.60309 * 180.25524 * 3 2 1 5 5 C 1.34044 * 111.56743 * 359.74793 * 4 3 2 6 6 C 1.35450 * 106.44498 * 359.97438 * 5 4 3 7 7 C 1.50699 * 128.00434 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47325 * 260.02559 * 7 6 5 9 9 C 1.46897 * 111.00421 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.77955 * 323.21826 * 9 8 7 11 11 C 1.55153 * 110.72111 * 86.45283 * 9 8 7 12 12 C 1.54912 * 101.58230 * 153.86794 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.08998 * 109.88422 * 118.13138 * 26 13 12 28 28 C 1.53008 * 109.88280 * 239.29759 * 26 13 12 29 29 H 1.08996 * 109.46923 * 270.16414 * 1 2 3 30 30 H 1.09000 * 109.46751 * 30.16294 * 1 2 3 31 31 H 1.09000 * 109.47075 * 150.16463 * 1 2 3 32 32 H 1.07997 * 126.77624 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47155 * 140.02831 * 7 6 5 34 34 H 1.08998 * 109.47614 * 20.02562 * 7 6 5 35 35 H 1.00899 * 111.00279 * 303.95778 * 8 7 6 36 36 H 1.08994 * 111.00496 * 35.79389 * 11 9 8 37 37 H 1.09003 * 111.03753 * 271.95636 * 11 9 8 38 38 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 39 39 H 1.09001 * 110.46061 * 81.87930 * 12 11 9 40 40 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 41 41 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 42 42 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.46962 * 58.54512 * 28 26 13 44 44 H 1.08996 * 109.46997 * 178.54517 * 28 26 13 45 45 H 1.08993 * 109.46597 * 298.54448 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 2.3540 -1.1320 0.0037 7 6 1.9591 -2.5863 0.0076 8 7 1.5920 -2.9977 -1.3540 9 6 1.1999 -4.4130 -1.3888 10 1 1.8109 -5.0005 -0.7034 11 6 -0.3070 -4.5734 -1.0559 12 6 -0.6468 -5.8984 -1.7831 13 7 0.1443 -5.8600 -3.0265 14 6 -0.1424 -6.5289 -4.1608 15 8 0.5827 -6.4228 -5.1273 16 6 -1.3641 -7.4088 -4.2284 17 16 -1.4733 -8.1644 -5.8695 18 6 -2.9471 -9.1100 -5.6735 19 1 -3.4796 -9.0915 -4.7342 20 6 -3.4236 -9.8786 -6.7264 21 7 -2.7743 -9.9016 -7.8712 22 14 -4.9865 -10.8806 -6.5188 23 1 -5.2791 -11.6083 -7.7798 24 1 -4.8053 -11.8572 -5.4149 25 1 -6.1170 -9.9733 -6.1966 26 6 1.3012 -4.9762 -2.8221 27 1 2.2253 -5.5430 -2.9353 28 6 1.2642 -3.8283 -3.8331 29 1 -0.3633 0.0029 1.0276 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 4.5339 -1.1534 -0.0075 33 1 1.1074 -2.7298 0.6725 34 1 2.7975 -3.1896 0.3557 35 1 0.8595 -2.4107 -1.7241 36 1 -0.8872 -3.7449 -1.4620 37 1 -0.4625 -4.6667 0.0190 38 1 -1.7115 -5.9431 -2.0121 39 1 -0.3543 -6.7534 -1.1736 40 1 -2.2549 -6.8082 -4.0446 41 1 -1.2907 -8.1909 -3.4729 42 1 -1.9629 -9.3810 -7.9791 43 1 0.3345 -3.2715 -3.7167 44 1 2.1102 -3.1635 -3.6591 45 1 1.3217 -4.2325 -4.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178148557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:38 Heat of formation + Delta-G solvation = 2.075530 kcal Electronic energy + Delta-G solvation = -26638.115616 eV Core-core repulsion = 22784.048703 eV Total energy + Delta-G solvation = -3854.066913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.86145 -41.39060 -39.18553 -36.99977 -35.14466 -34.75511 -33.30443 -32.34802 -31.63860 -29.97905 -29.56907 -27.17632 -27.04670 -25.73129 -24.00990 -22.41800 -22.25170 -21.58514 -20.53802 -19.87413 -18.53557 -18.48059 -18.13442 -17.39579 -17.02469 -16.54690 -16.14173 -15.94169 -15.81802 -15.67351 -15.02203 -14.72853 -14.49464 -14.44643 -14.20970 -14.06033 -13.94620 -13.74989 -13.66207 -13.54563 -13.45146 -13.26893 -13.13799 -12.91315 -12.73956 -12.55714 -11.95822 -11.89813 -11.81792 -11.72867 -11.54567 -11.10163 -10.92930 -10.82544 -10.42802 -10.33393 -9.74285 -9.33831 -8.93290 -8.88926 -6.28858 0.62229 1.13873 1.24508 1.50483 1.51321 1.60458 1.80521 2.00063 2.33759 2.45243 3.01627 3.08495 3.13749 3.32541 3.46118 3.58134 3.63692 3.82908 4.01387 4.08958 4.10134 4.15845 4.19703 4.30455 4.33982 4.41429 4.57017 4.63151 4.63655 4.67418 4.73441 4.78702 4.82465 4.89166 4.98483 5.00782 5.06132 5.09491 5.26347 5.34088 5.47482 5.62867 6.00096 6.13578 6.33342 6.36689 7.05344 7.08080 7.37136 8.49983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029355 B = 0.001936 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.615598 B =14462.623499 C =14776.543301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 N -0.407 5.407 4 O 0.078 5.922 5 C -0.032 4.032 6 C -0.208 4.208 7 C 0.142 3.858 8 N -0.677 5.677 9 C 0.100 3.900 10 H 0.118 0.882 11 C -0.150 4.150 12 C 0.089 3.911 13 N -0.612 5.612 14 C 0.544 3.456 15 O -0.563 6.563 16 C -0.099 4.099 17 S -0.197 6.197 18 C -0.612 4.612 19 H 0.075 0.925 20 C -0.020 4.020 21 N -0.913 5.913 22 Si 1.137 2.863 23 H -0.281 1.281 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.138 3.862 27 H 0.062 0.938 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.346 0.654 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 17.319 26.141 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 N -0.116 5.116 4 O 0.017 5.983 5 C -0.114 4.114 6 C -0.212 4.212 7 C 0.014 3.986 8 N -0.309 5.309 9 C -0.011 4.011 10 H 0.136 0.864 11 C -0.189 4.189 12 C -0.033 4.033 13 N -0.348 5.348 14 C 0.332 3.668 15 O -0.442 6.442 16 C -0.250 4.250 17 S 0.030 5.970 18 C -0.760 4.760 19 H 0.094 0.906 20 C -0.223 4.223 21 N -0.548 5.548 22 Si 0.954 3.046 23 H -0.206 1.206 24 H -0.187 1.187 25 H -0.187 1.187 26 C 0.035 3.965 27 H 0.081 0.919 28 C -0.201 4.201 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.854 17.650 23.709 30.854 hybrid contribution -0.514 0.141 1.517 1.608 sum 8.340 17.791 25.225 31.975 Atomic orbital electron populations 1.20270 0.84817 1.04214 1.04217 1.24036 1.00022 0.88807 1.01808 1.73871 0.90199 1.25712 1.21850 1.84787 1.21189 1.24586 1.67731 1.26575 1.02222 0.82541 1.00088 1.21351 0.92260 0.97520 1.10112 1.20168 1.01763 0.87425 0.89259 1.60407 1.46547 1.02101 1.21807 1.22460 0.95275 0.89898 0.93432 0.86428 1.23518 0.96465 0.96371 1.02588 1.22612 0.96482 1.00054 0.84157 1.48509 1.27891 1.46067 1.12285 1.19672 0.85645 0.79581 0.81887 1.90684 1.51728 1.64826 1.36912 1.23155 0.99346 1.01308 1.01226 1.85092 1.36281 1.59164 1.16464 1.24012 1.11735 1.35076 1.05155 0.90643 1.27873 1.06206 0.97325 0.90925 1.70921 1.17831 1.39921 1.26120 0.82720 0.70092 0.74998 0.76765 1.20587 1.18666 1.18721 1.21608 0.87793 0.90386 0.96747 0.91946 1.21834 1.02648 0.97898 0.97713 0.88980 0.91033 0.88846 0.73303 0.91865 0.87819 0.83391 0.90237 0.86404 0.90282 0.89353 0.87610 0.87465 0.92922 0.92961 0.89228 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.39 71.24 0.74 0.02 16 2 C 0.01 0.18 7.33 43.58 0.32 0.50 16 3 N -0.41 -7.93 12.07 -49.54 -0.60 -8.53 16 4 O 0.08 1.28 11.20 71.60 0.80 2.08 16 5 C -0.03 -0.31 12.26 67.18 0.82 0.52 16 6 C -0.21 -2.12 5.84 -19.74 -0.12 -2.24 16 7 C 0.14 0.81 6.03 85.56 0.52 1.33 16 8 N -0.68 -6.25 4.88 -489.43 -2.39 -8.64 16 9 C 0.10 1.05 3.09 46.11 0.14 1.19 16 10 H 0.12 0.85 7.90 -2.38 -0.02 0.83 16 11 C -0.15 -1.26 6.63 31.99 0.21 -1.05 16 12 C 0.09 1.40 6.69 86.86 0.58 1.98 16 13 N -0.61 -15.83 3.08 -788.03 -2.43 -18.25 16 14 C 0.54 20.68 7.65 87.66 0.67 21.35 16 15 O -0.56 -26.68 14.75 -3.04 -0.04 -26.72 16 16 C -0.10 -4.00 5.16 71.24 0.37 -3.63 16 17 S -0.20 -10.97 19.60 -56.49 -1.11 -12.08 16 18 C -0.61 -35.38 9.50 67.95 0.65 -34.73 16 19 H 0.08 4.06 7.80 -2.92 -0.02 4.04 16 20 C -0.02 -1.18 5.49 84.86 0.47 -0.71 16 21 N -0.91 -58.34 13.67 21.65 0.30 -58.04 16 22 Si 1.14 49.06 29.92 68.60 2.05 51.11 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 C 0.14 2.94 3.49 45.35 0.16 3.10 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.14 -3.44 8.19 71.98 0.59 -2.85 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.54 7.75 -2.39 -0.02 0.52 16 32 H 0.25 0.23 8.06 -2.91 -0.02 0.21 16 33 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 34 H 0.10 0.32 8.09 -2.39 -0.02 0.30 16 35 H 0.35 3.52 7.14 -89.69 -0.64 2.88 16 36 H 0.08 0.71 7.81 -2.39 -0.02 0.69 16 37 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.08 1.28 7.48 -2.39 -0.02 1.26 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 3.91 7.85 -2.39 -0.02 3.89 16 41 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 42 H 0.26 17.32 7.12 -92.71 -0.66 16.66 16 43 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 44 H 0.09 1.87 7.45 -2.39 -0.02 1.85 16 45 H 0.02 0.81 6.74 -2.39 -0.02 0.79 16 Total: -1.00 -84.57 384.25 3.18 -81.40 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.47 Total: 12.91 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 6.12 Total: -15.23 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -5.12 Total: -93.46 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.76 Total: -24.64 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -1.11 Total: -12.08 kcal Total: -84.57 3.18 -81.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.472 kcal (2) G-P(sol) polarization free energy of solvation -84.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds