Wall clock time and date at job start Tue Mar 31 2020 22:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34481 * 126.16444 * 2 1 4 4 C 1.30259 * 108.70241 * 179.97438 * 3 2 1 5 5 O 1.33963 * 108.75766 * 359.73973 * 4 3 2 6 6 C 1.34331 * 126.16881 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.44321 * 359.97438 * 6 2 1 8 8 N 1.46899 * 109.47415 * 89.99893 * 7 6 2 9 9 C 1.46898 * 111.00263 * 180.02562 * 8 7 6 10 10 H 1.09005 * 110.77693 * 323.21625 * 9 8 7 11 11 C 1.55151 * 110.71929 * 86.45346 * 9 8 7 12 12 C 1.54917 * 101.58025 * 153.86766 * 11 9 8 13 13 N 1.47421 * 104.82974 * 322.99292 * 12 11 9 14 14 C 1.34779 * 125.64406 * 204.09642 * 13 12 11 15 15 O 1.21279 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.50693 * 120.00192 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47437 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00301 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99723 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31640 * 119.99732 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00352 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47175 * 59.99663 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46878 * 299.99734 * 22 20 18 26 26 C 1.47017 * 108.70491 * 24.12476 * 13 12 11 27 27 H 1.09003 * 109.87662 * 118.51475 * 26 13 12 28 28 C 1.52996 * 109.88408 * 239.52351 * 26 13 12 29 29 H 1.08997 * 109.46786 * 269.99691 * 1 2 3 30 30 H 1.08996 * 109.47343 * 29.99842 * 1 2 3 31 31 H 1.09004 * 109.46774 * 149.99932 * 1 2 3 32 32 H 1.07999 * 125.62080 * 179.97438 * 4 3 2 33 33 H 1.09011 * 109.46806 * 329.99951 * 7 6 2 34 34 H 1.08998 * 109.47015 * 210.00475 * 7 6 2 35 35 H 1.00900 * 110.99695 * 303.95562 * 8 7 6 36 36 H 1.08998 * 111.00631 * 35.79603 * 11 9 8 37 37 H 1.09004 * 111.00792 * 271.94001 * 11 9 8 38 38 H 1.09001 * 110.36355 * 81.83037 * 12 11 9 39 39 H 1.09003 * 110.36286 * 204.14951 * 12 11 9 40 40 H 1.09004 * 109.47286 * 300.00436 * 16 14 13 41 41 H 1.09003 * 109.47508 * 60.00232 * 16 14 13 42 42 H 0.97004 * 119.99579 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.47081 * 58.54988 * 28 26 13 44 44 H 1.09002 * 109.47307 * 178.54858 * 28 26 13 45 45 H 1.09005 * 109.47557 * 298.54525 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 8 3.5734 -0.6444 0.0067 6 6 2.2998 -1.0844 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 7 1.7025 -2.9896 -1.3856 9 6 1.2631 -4.3908 -1.4248 10 1 1.7234 -4.9631 -0.6194 11 6 -0.2838 -4.4832 -1.3494 12 6 -0.5501 -5.8311 -2.0652 13 7 0.4421 -5.8823 -3.1544 14 6 0.3248 -6.5977 -4.2906 15 8 1.2077 -6.5651 -5.1215 16 6 -0.9032 -7.4381 -4.5286 17 16 -0.7631 -8.2716 -6.1291 18 6 -2.2870 -9.1558 -6.1482 19 1 -2.9704 -9.0718 -5.3162 20 6 -2.6092 -9.9602 -7.2324 21 7 -1.7764 -10.0621 -8.2468 22 14 -4.2245 -10.8981 -7.2523 23 1 -5.3550 -9.9389 -7.1688 24 1 -4.3291 -11.6772 -8.5122 25 1 -4.2738 -11.8235 -6.0920 26 6 1.5808 -5.0244 -2.7956 27 1 2.4892 -5.6232 -2.7282 28 6 1.7577 -3.9276 -3.8475 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.4066 1.3435 0.0003 33 1 0.8916 -2.6033 0.5136 34 1 2.5903 -3.1353 0.5129 35 1 1.0689 -2.3977 -1.9015 36 1 -0.7512 -3.6572 -1.8854 37 1 -0.6232 -4.5170 -0.3141 38 1 -0.4005 -6.6624 -1.3763 39 1 -1.5613 -5.8514 -2.4717 40 1 -0.9925 -8.1831 -3.7379 41 1 -1.7865 -6.7994 -4.5273 42 1 -2.0014 -10.6245 -9.0044 43 1 0.8434 -3.3380 -3.9149 44 1 2.5870 -3.2804 -3.5617 45 1 1.9689 -4.3827 -4.8152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178155790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:51 Heat of formation + Delta-G solvation = -3.789046 kcal Electronic energy + Delta-G solvation = -26602.795721 eV Core-core repulsion = 22748.474501 eV Total energy + Delta-G solvation = -3854.321220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.71656 -40.27333 -37.95445 -35.78476 -35.35210 -32.55218 -32.43164 -31.37785 -30.66962 -28.88050 -27.83000 -25.87669 -25.49507 -24.80754 -23.03219 -22.60214 -21.17346 -20.72794 -18.92394 -17.88195 -17.54117 -17.12736 -16.73173 -16.28458 -16.07661 -15.33050 -15.05021 -14.92650 -14.80856 -14.44074 -14.01921 -13.77353 -13.70300 -13.65376 -13.29451 -13.14082 -12.94538 -12.65622 -12.59691 -12.53251 -12.43284 -12.17305 -11.84656 -11.52939 -11.39421 -11.05579 -11.04932 -11.03019 -10.94458 -10.84180 -10.76519 -9.82865 -9.32025 -9.20359 -9.06385 -8.87101 -8.50893 -8.23761 -6.50459 -6.21825 -3.92592 1.01407 2.24533 2.35741 2.87360 3.08292 3.22732 3.24498 3.28384 3.56146 3.71639 3.78373 4.16557 4.20238 4.24946 4.37750 4.39972 4.58585 4.67434 4.86694 4.95528 5.05960 5.06471 5.11504 5.13065 5.13610 5.25801 5.33831 5.41504 5.47980 5.51035 5.54892 5.63109 5.66352 5.70809 5.88028 5.91769 5.92783 6.08546 6.12677 6.38155 6.43024 6.59268 6.80709 7.31816 7.58514 7.68961 8.34438 8.58905 9.23127 10.85485 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.001940 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.655122 B =14431.948060 C =14819.984719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 N -0.488 5.488 4 C 0.174 3.826 5 O -0.194 6.194 6 C -0.039 4.039 7 C 0.143 3.857 8 N -0.671 5.671 9 C 0.083 3.917 10 H 0.098 0.902 11 C -0.165 4.165 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.550 3.450 15 O -0.511 6.511 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.147 3.853 27 H 0.077 0.923 28 C -0.154 4.154 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.350 0.650 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.269 0.731 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 19.038 22.065 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 N -0.217 5.217 4 C -0.053 4.053 5 O -0.080 6.080 6 C -0.093 4.093 7 C 0.014 3.986 8 N -0.303 5.303 9 C -0.028 4.028 10 H 0.116 0.884 11 C -0.205 4.205 12 C -0.020 4.020 13 N -0.363 5.363 14 C 0.338 3.662 15 O -0.385 6.385 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C 0.043 3.957 27 H 0.095 0.905 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.171 0.829 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.736 19.390 20.489 29.251 hybrid contribution -2.681 -1.046 1.266 3.144 sum 5.055 18.345 21.756 28.903 Atomic orbital electron populations 1.20134 0.86546 1.03441 1.02928 1.21564 0.97963 0.87707 1.05761 1.70368 1.01466 1.31720 1.18150 1.28039 0.97535 0.79402 1.00309 1.84455 1.30010 1.24449 1.69061 1.22970 0.80953 0.97297 1.08041 1.20258 1.00488 0.86574 0.91271 1.60455 1.55428 1.02729 1.11668 1.22632 0.93197 0.88984 0.97968 0.88363 1.23539 0.97117 0.98498 1.01348 1.22177 0.93718 0.96785 0.89318 1.48604 1.20739 1.47782 1.19149 1.19977 0.88217 0.78593 0.79375 1.90698 1.41510 1.63192 1.43084 1.23514 0.97532 1.01421 1.07283 1.85408 1.27753 1.56054 1.14074 1.22813 1.05109 1.32577 1.07908 0.91025 1.24993 0.97861 0.96131 0.94600 1.70015 1.35585 1.37443 1.07196 0.86226 0.82157 0.79487 0.77638 1.19956 1.20798 1.19944 1.21342 0.89646 0.91595 0.93132 0.90505 1.21969 1.01749 0.97906 0.99627 0.90632 0.90305 0.91007 0.73472 0.91359 0.88750 0.82919 0.90299 0.89831 0.91220 0.90230 0.89401 0.89446 0.92122 0.93453 0.90713 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.05 36.00 0.36 -0.07 16 2 C -0.01 -0.08 7.11 -82.81 -0.59 -0.67 16 3 N -0.49 -4.67 11.29 -11.18 -0.13 -4.79 16 4 C 0.17 1.25 13.23 52.10 0.69 1.94 16 5 O -0.19 -1.69 10.77 5.37 0.06 -1.63 16 6 C -0.04 -0.31 6.90 -35.69 -0.25 -0.56 16 7 C 0.14 0.84 5.70 -4.98 -0.03 0.81 16 8 N -0.67 -4.77 4.88 -106.06 -0.52 -5.28 16 9 C 0.08 0.62 3.11 -65.89 -0.20 0.42 16 10 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 11 C -0.17 -1.09 6.63 -24.58 -0.16 -1.25 16 12 C 0.10 1.01 6.69 -2.53 -0.02 0.99 16 13 N -0.62 -8.64 3.08 -163.02 -0.50 -9.14 16 14 C 0.55 10.47 7.65 -10.99 -0.08 10.38 16 15 O -0.51 -11.70 14.76 5.56 0.08 -11.62 16 16 C -0.15 -2.99 5.16 36.00 0.19 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.15 1.73 3.48 -66.96 -0.23 1.50 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 C -0.15 -1.94 8.19 37.16 0.30 -1.64 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 32 H 0.25 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.07 0.28 7.79 -51.92 -0.40 -0.13 16 34 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.35 2.50 7.52 -39.29 -0.30 2.21 16 36 H 0.08 0.52 7.81 -51.93 -0.41 0.12 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 44 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 45 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -36.52 385.62 -8.31 -44.82 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.78 Total: -1.33 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.17 Total: -3.88 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.41 Total: -44.64 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.14 Total: -13.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.52 -8.31 -44.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178155790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.035 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds