Wall clock time and date at job start Tue Mar 31 2020 22:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34481 * 126.16444 * 2 1 4 4 C 1.30259 * 108.70241 * 179.97438 * 3 2 1 5 5 O 1.33963 * 108.75766 * 359.73973 * 4 3 2 6 6 C 1.34331 * 126.16881 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.44321 * 359.97438 * 6 2 1 8 8 N 1.46899 * 109.47415 * 89.99893 * 7 6 2 9 9 C 1.46898 * 111.00263 * 180.02562 * 8 7 6 10 10 H 1.09005 * 110.77693 * 323.21625 * 9 8 7 11 11 C 1.55151 * 110.71929 * 86.45346 * 9 8 7 12 12 C 1.54917 * 101.58025 * 153.86766 * 11 9 8 13 13 N 1.47421 * 104.82974 * 322.99292 * 12 11 9 14 14 C 1.34779 * 125.64406 * 204.09642 * 13 12 11 15 15 O 1.21279 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.50693 * 120.00192 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47437 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00301 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99723 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31640 * 119.99732 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00352 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47175 * 59.99663 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46878 * 299.99734 * 22 20 18 26 26 C 1.47017 * 108.70491 * 24.12476 * 13 12 11 27 27 H 1.09003 * 109.87662 * 118.51475 * 26 13 12 28 28 C 1.52996 * 109.88408 * 239.52351 * 26 13 12 29 29 H 1.08997 * 109.46786 * 269.99691 * 1 2 3 30 30 H 1.08996 * 109.47343 * 29.99842 * 1 2 3 31 31 H 1.09004 * 109.46774 * 149.99932 * 1 2 3 32 32 H 1.07999 * 125.62080 * 179.97438 * 4 3 2 33 33 H 1.09011 * 109.46806 * 329.99951 * 7 6 2 34 34 H 1.08998 * 109.47015 * 210.00475 * 7 6 2 35 35 H 1.00900 * 110.99695 * 303.95562 * 8 7 6 36 36 H 1.08998 * 111.00631 * 35.79603 * 11 9 8 37 37 H 1.09004 * 111.00792 * 271.94001 * 11 9 8 38 38 H 1.09001 * 110.36355 * 81.83037 * 12 11 9 39 39 H 1.09003 * 110.36286 * 204.14951 * 12 11 9 40 40 H 1.09004 * 109.47286 * 300.00436 * 16 14 13 41 41 H 1.09003 * 109.47508 * 60.00232 * 16 14 13 42 42 H 0.97004 * 119.99579 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.47081 * 58.54988 * 28 26 13 44 44 H 1.09002 * 109.47307 * 178.54858 * 28 26 13 45 45 H 1.09005 * 109.47557 * 298.54525 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 8 3.5734 -0.6444 0.0067 6 6 2.2998 -1.0844 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 7 1.7025 -2.9896 -1.3856 9 6 1.2631 -4.3908 -1.4248 10 1 1.7234 -4.9631 -0.6194 11 6 -0.2838 -4.4832 -1.3494 12 6 -0.5501 -5.8311 -2.0652 13 7 0.4421 -5.8823 -3.1544 14 6 0.3248 -6.5977 -4.2906 15 8 1.2077 -6.5651 -5.1215 16 6 -0.9032 -7.4381 -4.5286 17 16 -0.7631 -8.2716 -6.1291 18 6 -2.2870 -9.1558 -6.1482 19 1 -2.9704 -9.0718 -5.3162 20 6 -2.6092 -9.9602 -7.2324 21 7 -1.7764 -10.0621 -8.2468 22 14 -4.2245 -10.8981 -7.2523 23 1 -5.3550 -9.9389 -7.1688 24 1 -4.3291 -11.6772 -8.5122 25 1 -4.2738 -11.8235 -6.0920 26 6 1.5808 -5.0244 -2.7956 27 1 2.4892 -5.6232 -2.7282 28 6 1.7577 -3.9276 -3.8475 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.4066 1.3435 0.0003 33 1 0.8916 -2.6033 0.5136 34 1 2.5903 -3.1353 0.5129 35 1 1.0689 -2.3977 -1.9015 36 1 -0.7512 -3.6572 -1.8854 37 1 -0.6232 -4.5170 -0.3141 38 1 -0.4005 -6.6624 -1.3763 39 1 -1.5613 -5.8514 -2.4717 40 1 -0.9925 -8.1831 -3.7379 41 1 -1.7865 -6.7994 -4.5273 42 1 -2.0014 -10.6245 -9.0044 43 1 0.8434 -3.3380 -3.9149 44 1 2.5870 -3.2804 -3.5617 45 1 1.9689 -4.3827 -4.8152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178155790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:50 Heat of formation + Delta-G solvation = -31.789362 kcal Electronic energy + Delta-G solvation = -26604.009906 eV Core-core repulsion = 22748.474501 eV Total energy + Delta-G solvation = -3855.535405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.26005 -41.33372 -39.11163 -36.52061 -35.99169 -34.58752 -33.38987 -32.24001 -31.57246 -30.03107 -28.58038 -27.65229 -26.59510 -25.46089 -23.96553 -23.14590 -21.70209 -21.60834 -20.23241 -19.53432 -18.31369 -17.93443 -17.70030 -17.18822 -16.91108 -16.87970 -16.35900 -16.06588 -15.74098 -15.70977 -15.12389 -14.64612 -14.52992 -14.37074 -14.22032 -14.13855 -13.78963 -13.75482 -13.61375 -13.43806 -13.15687 -13.11473 -13.01095 -12.86669 -12.78362 -12.62966 -12.50491 -11.97213 -11.83563 -11.78417 -11.66508 -11.44367 -11.12993 -10.83475 -10.28217 -9.72589 -9.68066 -9.38386 -8.68180 -8.34575 -6.13466 0.48297 1.24067 1.43984 1.44943 1.54891 1.60530 1.70025 1.89281 2.10150 2.27520 2.99291 3.12012 3.24607 3.35934 3.51483 3.57071 3.84258 3.91105 3.94327 4.04515 4.19145 4.23916 4.27403 4.37110 4.41257 4.44823 4.52584 4.67393 4.69003 4.73280 4.75640 4.81513 4.84622 4.99438 5.07957 5.08636 5.12493 5.20569 5.35852 5.40869 5.45482 5.51138 5.90000 6.19208 6.26728 6.44178 6.78125 7.06150 7.17294 8.74394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.001940 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.655122 B =14431.948060 C =14819.984719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.025 4.025 3 N -0.527 5.527 4 C 0.178 3.822 5 O -0.210 6.210 6 C -0.050 4.050 7 C 0.148 3.852 8 N -0.681 5.681 9 C 0.100 3.900 10 H 0.118 0.882 11 C -0.150 4.150 12 C 0.090 3.910 13 N -0.614 5.614 14 C 0.545 3.455 15 O -0.564 6.564 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.138 3.862 27 H 0.060 0.940 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.286 0.714 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.351 0.649 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 19.571 25.351 32.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 N -0.256 5.256 4 C -0.048 4.048 5 O -0.096 6.096 6 C -0.103 4.103 7 C 0.020 3.980 8 N -0.313 5.313 9 C -0.010 4.010 10 H 0.136 0.864 11 C -0.189 4.189 12 C -0.032 4.032 13 N -0.349 5.349 14 C 0.333 3.667 15 O -0.442 6.442 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.185 1.185 26 C 0.035 3.965 27 H 0.078 0.922 28 C -0.201 4.201 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.301 0.699 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.171 0.829 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.871 19.958 23.846 31.645 hybrid contribution -2.001 -1.069 0.341 2.294 sum 3.870 18.889 24.187 30.932 Atomic orbital electron populations 1.20219 0.85096 1.03900 1.03736 1.22006 0.99117 0.87668 1.05705 1.70379 1.02673 1.32789 1.19787 1.28936 0.98141 0.79323 0.98388 1.84462 1.30646 1.25158 1.69356 1.23345 0.80633 0.98165 1.08198 1.20352 1.01878 0.85316 0.90439 1.60324 1.55711 1.02399 1.12881 1.22462 0.94243 0.89171 0.95162 0.86437 1.23543 0.95907 0.96407 1.03090 1.22606 0.92615 0.99644 0.88373 1.48525 1.22279 1.45914 1.18226 1.19745 0.87221 0.79153 0.80539 1.90681 1.42943 1.65183 1.45393 1.23301 0.99111 1.01610 1.02941 1.85620 1.28993 1.57742 1.20227 1.23153 1.05038 1.32642 1.08516 0.89858 1.26160 1.02084 0.97076 0.93939 1.70192 1.38038 1.38494 1.08072 0.84988 0.76847 0.78040 0.78027 1.18578 1.20453 1.18543 1.21550 0.88439 0.90954 0.95586 0.92186 1.21833 1.02449 0.98097 0.97762 0.89572 0.91186 0.89206 0.69897 0.88680 0.88245 0.82870 0.89944 0.86073 0.89383 0.90024 0.87618 0.87692 0.92003 0.92704 0.89667 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.05 71.24 0.72 0.02 16 2 C -0.03 -0.38 7.11 41.26 0.29 -0.09 16 3 N -0.53 -9.55 11.29 -304.07 -3.43 -12.98 16 4 C 0.18 2.31 13.23 130.48 1.73 4.04 16 5 O -0.21 -3.35 10.77 -3.70 -0.04 -3.39 16 6 C -0.05 -0.70 6.90 24.79 0.17 -0.53 16 7 C 0.15 1.23 5.70 85.56 0.49 1.72 16 8 N -0.68 -7.64 4.88 -489.46 -2.39 -10.02 16 9 C 0.10 1.17 3.11 46.10 0.14 1.31 16 10 H 0.12 1.02 7.90 -2.38 -0.02 1.00 16 11 C -0.15 -1.28 6.63 31.99 0.21 -1.07 16 12 C 0.09 1.43 6.69 86.86 0.58 2.01 16 13 N -0.61 -16.29 3.08 -788.08 -2.43 -18.71 16 14 C 0.55 21.06 7.65 87.65 0.67 21.73 16 15 O -0.56 -27.22 14.76 -3.03 -0.04 -27.27 16 16 C -0.12 -4.81 5.16 71.23 0.37 -4.44 16 17 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 18 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.69 5.49 84.85 0.47 1.16 16 21 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 22 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 C 0.14 3.12 3.48 45.34 0.16 3.28 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 C -0.14 -3.63 8.19 71.98 0.59 -3.04 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.49 7.79 -2.39 -0.02 0.47 16 32 H 0.29 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.10 0.30 7.79 -2.38 -0.02 0.29 16 34 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 35 H 0.35 3.98 7.52 -89.69 -0.67 3.31 16 36 H 0.08 0.72 7.81 -2.39 -0.02 0.70 16 37 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.32 7.48 -2.39 -0.02 1.30 16 40 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 41 H 0.10 3.86 7.85 -2.39 -0.02 3.84 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.05 1.27 7.84 -2.39 -0.02 1.25 16 44 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 45 H 0.03 0.90 6.75 -2.38 -0.02 0.89 16 Total: -1.00 -85.05 385.62 0.38 -84.68 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.33 Total: 12.58 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 7.23 Total: -4.50 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -7.96 Total: -97.80 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.08 Total: -30.65 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -85.05 0.38 -84.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178155790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.890 kcal (2) G-P(sol) polarization free energy of solvation -85.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds