Wall clock time and date at job start Tue Mar 31 2020 22:50:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.35455 * 128.00196 * 2 1
4 4 O 1.34041 * 106.44197 * 180.23180 * 3 2 1
5 5 N 1.20922 * 111.57045 * 359.74906 * 4 3 2
6 6 C 1.30178 * 111.60226 * 0.02562 * 5 4 3
7 7 C 1.50697 * 126.80268 * 179.97438 * 6 5 4
8 8 N 1.46899 * 109.47415 * 90.02150 * 7 6 5
9 9 C 1.46898 * 111.00263 * 180.02562 * 8 7 6
10 10 H 1.09005 * 110.77693 * 323.21625 * 9 8 7
11 11 C 1.55151 * 110.71929 * 86.45346 * 9 8 7
12 12 C 1.54917 * 101.58025 * 153.86766 * 11 9 8
13 13 N 1.47421 * 104.82974 * 322.99292 * 12 11 9
14 14 C 1.34779 * 125.64406 * 204.09642 * 13 12 11
15 15 O 1.21279 * 119.99656 * 180.02562 * 14 13 12
16 16 C 1.50693 * 120.00192 * 0.02562 * 14 13 12
17 17 S 1.81005 * 109.47437 * 180.02562 * 16 14 13
18 18 C 1.76197 * 100.00301 * 180.02562 * 17 16 14
19 19 H 1.07997 * 119.99723 * 0.02562 * 18 17 16
20 20 C 1.38793 * 120.00120 * 180.02562 * 18 17 16
21 21 N 1.31640 * 119.99732 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00352 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.47175 * 59.99663 * 22 20 18
24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.46878 * 299.99734 * 22 20 18
26 26 C 1.47017 * 108.70491 * 24.12476 * 13 12 11
27 27 H 1.09003 * 109.87662 * 118.51475 * 26 13 12
28 28 C 1.52996 * 109.88408 * 239.52351 * 26 13 12
29 29 H 1.08998 * 109.47081 * 270.16383 * 1 2 3
30 30 H 1.08996 * 109.47287 * 30.16961 * 1 2 3
31 31 H 1.09003 * 109.46274 * 150.16312 * 1 2 3
32 32 H 1.08002 * 126.78087 * 359.96625 * 3 2 1
33 33 H 1.09011 * 109.46806 * 330.02208 * 7 6 5
34 34 H 1.08998 * 109.47015 * 210.02733 * 7 6 5
35 35 H 1.00900 * 110.99695 * 303.95562 * 8 7 6
36 36 H 1.08998 * 111.00631 * 35.79603 * 11 9 8
37 37 H 1.09004 * 111.00792 * 271.94001 * 11 9 8
38 38 H 1.09001 * 110.36355 * 81.83037 * 12 11 9
39 39 H 1.09003 * 110.36286 * 204.14951 * 12 11 9
40 40 H 1.09004 * 109.47286 * 300.00436 * 16 14 13
41 41 H 1.09003 * 109.47508 * 60.00232 * 16 14 13
42 42 H 0.97004 * 119.99579 * 179.97438 * 21 20 18
43 43 H 1.08998 * 109.47081 * 58.54988 * 28 26 13
44 44 H 1.09002 * 109.47307 * 178.54858 * 28 26 13
45 45 H 1.09005 * 109.47557 * 298.54525 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3410 1.0674 0.0000
4 8 3.5877 0.5748 -0.0052
5 7 3.5879 -0.6344 -0.0033
6 6 2.3776 -1.1139 0.0027
7 6 1.9828 -2.5682 0.0062
8 7 1.8602 -3.0391 1.3923
9 6 1.4763 -4.4564 1.4349
10 1 0.7772 -4.6918 0.6323
11 6 2.7297 -5.3673 1.3559
12 6 2.2311 -6.6455 2.0753
13 7 1.3715 -6.1530 3.1670
14 6 1.0893 -6.8175 4.3052
15 8 0.3661 -6.3135 5.1381
16 6 1.6725 -8.1865 4.5427
17 16 1.1116 -8.8114 6.1462
18 6 1.9198 -10.3770 6.1643
19 1 2.5377 -10.6753 5.3304
20 6 1.7622 -11.2269 7.2503
21 7 1.0094 -10.8630 8.2670
22 14 2.6184 -12.8870 7.2692
23 1 4.0872 -12.6875 7.1799
24 1 2.2918 -13.5981 8.5312
25 1 2.1574 -13.6949 6.1116
26 6 0.8725 -4.8174 2.8083
27 1 -0.2156 -4.8330 2.7451
28 6 1.3179 -3.7965 3.8572
29 1 -0.3633 0.0029 1.0276
30 1 -0.3633 0.8884 -0.5164
31 1 -0.3632 -0.8915 -0.5113
32 1 2.0576 2.1095 -0.0005
33 1 2.7445 -3.1527 -0.5101
34 1 1.0267 -2.6863 -0.5036
35 1 2.7148 -2.8808 1.9048
36 1 3.5703 -4.9222 1.8882
37 1 2.9937 -5.5798 0.3199
38 1 1.6548 -7.2664 1.3893
39 1 3.0737 -7.2065 2.4794
40 1 1.3437 -8.8634 3.7542
41 1 2.7607 -8.1239 4.5373
42 1 0.8989 -11.4571 9.0258
43 1 2.4061 -3.7920 3.9206
44 1 0.9665 -2.8051 3.5715
45 1 0.8985 -4.0651 4.8268
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001178155820.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:50:00
Heat of formation + Delta-G solvation = 8.513055 kcal
Electronic energy + Delta-G solvation = -26526.652157 eV
Core-core repulsion = 22672.864396 eV
Total energy + Delta-G solvation = -3853.787761 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.49 seconds
Orbital eigenvalues (eV)
-45.85724 -41.36256 -39.15389 -36.95806 -35.13995 -34.59742 -33.32059 -32.45900
-31.74397 -29.97845 -28.89485 -27.68968 -27.30052 -25.84346 -24.00101 -22.56278
-22.03007 -21.63099 -20.24796 -19.55221 -18.56243 -18.50744 -18.03016 -17.28532
-16.89652 -16.83912 -16.25016 -16.06944 -15.93609 -15.71075 -15.00240 -14.56437
-14.49987 -14.35749 -14.10747 -14.01429 -13.79381 -13.67191 -13.58602 -13.51620
-13.17535 -13.15751 -13.04637 -12.87812 -12.77044 -12.64367 -12.53887 -12.02631
-11.80980 -11.80202 -11.70156 -11.14078 -11.00677 -10.84891 -10.29921 -10.19066
-9.70610 -9.46463 -8.69162 -8.35594 -6.14489 0.62174 1.20132 1.26188
1.43018 1.44006 1.54114 1.58500 2.06675 2.26399 2.47333 2.98174
3.01826 3.21349 3.31523 3.48280 3.58996 3.65491 3.89193 4.00712
4.09431 4.14944 4.21875 4.28932 4.31354 4.40126 4.43401 4.49066
4.58614 4.64621 4.69668 4.77191 4.85897 4.92567 4.96067 4.97109
5.05010 5.06238 5.07835 5.33970 5.39813 5.43201 5.48545 5.88722
6.17995 6.18219 6.41299 7.05081 7.14918 7.35311 8.73408
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031396 B = 0.001904 C = 0.001860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 891.615436 B =14704.346510 C =15047.875914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.198 4.198
3 C -0.060 4.060
4 O 0.085 5.915
5 N -0.395 5.395
6 C 0.009 3.991
7 C 0.142 3.858
8 N -0.670 5.670
9 C 0.100 3.900
10 H 0.121 0.879
11 C -0.152 4.152
12 C 0.093 3.907
13 N -0.615 5.615
14 C 0.547 3.453
15 O -0.561 6.561
16 C -0.120 4.120
17 S -0.150 6.150
18 C -0.547 4.547
19 H 0.082 0.918
20 C 0.013 3.987
21 N -0.911 5.911
22 Si 0.999 3.001
23 H -0.262 1.262
24 H -0.278 1.278
25 H -0.261 1.261
26 C 0.141 3.859
27 H 0.067 0.933
28 C -0.143 4.143
29 H 0.073 0.927
30 H 0.087 0.913
31 H 0.074 0.926
32 H 0.253 0.747
33 H 0.055 0.945
34 H 0.112 0.888
35 H 0.345 0.655
36 H 0.072 0.928
37 H 0.113 0.887
38 H 0.091 0.909
39 H 0.079 0.921
40 H 0.106 0.894
41 H 0.102 0.898
42 H 0.271 0.729
43 H 0.047 0.953
44 H 0.089 0.911
45 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.573 22.275 -25.171 33.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.203 4.203
3 C -0.141 4.141
4 O 0.020 5.980
5 N -0.101 5.101
6 C -0.150 4.150
7 C 0.013 3.987
8 N -0.301 5.301
9 C -0.011 4.011
10 H 0.138 0.862
11 C -0.192 4.192
12 C -0.030 4.030
13 N -0.350 5.350
14 C 0.335 3.665
15 O -0.439 6.439
16 C -0.271 4.271
17 S 0.077 5.923
18 C -0.695 4.695
19 H 0.100 0.900
20 C -0.192 4.192
21 N -0.547 5.547
22 Si 0.821 3.179
23 H -0.187 1.187
24 H -0.203 1.203
25 H -0.185 1.185
26 C 0.037 3.963
27 H 0.085 0.915
28 C -0.201 4.201
29 H 0.091 0.909
30 H 0.105 0.895
31 H 0.093 0.907
32 H 0.269 0.731
33 H 0.073 0.927
34 H 0.131 0.869
35 H 0.164 0.836
36 H 0.091 0.909
37 H 0.131 0.869
38 H 0.109 0.891
39 H 0.098 0.902
40 H 0.124 0.876
41 H 0.121 0.879
42 H 0.080 0.920
43 H 0.066 0.934
44 H 0.108 0.892
45 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 1.997 22.646 -23.671 32.820
hybrid contribution 1.217 -1.749 -0.407 2.170
sum 3.214 20.896 -24.078 32.043
Atomic orbital electron populations
1.20130 0.85762 1.03982 1.03096 1.21665 0.99854 0.91126 1.07612
1.26551 0.81870 1.02792 1.02838 1.84769 1.30608 1.15138 1.67486
1.73856 1.23605 0.92247 1.20389 1.23705 0.88562 0.99381 1.03320
1.20232 1.02373 0.85865 0.90216 1.60392 1.40147 1.16905 1.12681
1.22492 0.96738 0.86415 0.95485 0.86154 1.23501 0.97937 0.95191
1.02558 1.22557 0.94245 0.97763 0.88387 1.48531 1.49983 1.18491
1.18006 1.19716 0.80218 0.86119 0.80492 1.90677 1.38736 1.69347
1.45184 1.23309 1.04335 0.96372 1.03078 1.85581 1.66437 1.20446
1.19801 1.23153 1.35117 1.02872 1.08341 0.89967 1.26153 0.95851
1.03279 0.93918 1.70187 1.37976 1.38655 1.07898 0.84991 0.78649
0.76207 0.78073 1.18689 1.20322 1.18541 1.21544 0.98216 0.81264
0.95247 0.91467 1.21833 1.00451 0.99924 0.97878 0.90878 0.89450
0.90671 0.73091 0.92724 0.86946 0.83590 0.90894 0.86896 0.89122
0.90241 0.87600 0.87931 0.91962 0.93424 0.89230 0.95252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.51 10.37 71.24 0.74 0.23 16
2 C -0.20 -2.31 6.32 -19.73 -0.12 -2.43 16
3 C -0.06 -0.57 12.26 67.18 0.82 0.25 16
4 O 0.08 1.37 11.20 71.62 0.80 2.18 16
5 N -0.39 -7.59 12.07 -49.56 -0.60 -8.19 16
6 C 0.01 0.14 6.84 43.58 0.30 0.44 16
7 C 0.14 1.64 6.05 85.56 0.52 2.15 16
8 N -0.67 -9.18 4.88 -489.46 -2.39 -11.57 16
9 C 0.10 1.38 3.11 46.10 0.14 1.52 16
10 H 0.12 1.22 7.90 -2.38 -0.02 1.20 16
11 C -0.15 -1.94 6.63 31.99 0.21 -1.72 16
12 C 0.09 1.71 6.69 86.86 0.58 2.29 16
13 N -0.61 -17.14 3.08 -788.08 -2.43 -19.56 16
14 C 0.55 21.57 7.65 87.65 0.67 22.24 16
15 O -0.56 -27.26 14.76 -3.03 -0.04 -27.31 16
16 C -0.12 -4.98 5.16 71.23 0.37 -4.61 16
17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16
18 C -0.55 -31.69 9.50 67.95 0.65 -31.04 16
19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16
20 C 0.01 0.74 5.49 84.85 0.47 1.20 16
21 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16
22 Si 1.00 43.92 29.55 68.60 2.03 45.94 16
23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16
24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16
26 C 0.14 3.29 3.48 45.34 0.16 3.45 16
27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
28 C -0.14 -3.73 8.19 71.98 0.59 -3.14 16
29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16
31 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16
32 H 0.25 0.00 8.06 -2.91 -0.02 -0.02 16
33 H 0.05 0.60 8.13 -2.38 -0.02 0.58 16
34 H 0.11 0.91 7.60 -2.39 -0.02 0.89 16
35 H 0.34 5.54 7.52 -89.69 -0.67 4.87 16
36 H 0.07 1.06 7.81 -2.39 -0.02 1.04 16
37 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16
38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
39 H 0.08 1.50 7.48 -2.39 -0.02 1.48 16
40 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16
41 H 0.10 3.92 7.85 -2.39 -0.02 3.90 16
42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
43 H 0.05 1.20 7.84 -2.39 -0.02 1.19 16
44 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16
45 H 0.03 1.00 6.75 -2.38 -0.02 0.98 16
Total: -1.00 -81.58 385.41 2.91 -78.66
By element:
Atomic # 1 Polarization: 14.69 SS G_CDS: 0.33 Total: 15.02 kcal
Atomic # 6 Polarization: -15.27 SS G_CDS: 6.09 Total: -9.18 kcal
Atomic # 7 Polarization: -90.49 SS G_CDS: -5.13 Total: -95.62 kcal
Atomic # 8 Polarization: -25.89 SS G_CDS: 0.76 Total: -25.13 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal
Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal
Total: -81.58 2.91 -78.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178155820.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.175 kcal
(2) G-P(sol) polarization free energy of solvation -81.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.49 seconds