Wall clock time and date at job start Tue Mar 31 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30253 * 125.61888 * 2 1 4 4 C 1.34471 * 108.70399 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16823 * 180.02562 * 4 3 2 6 6 C 1.34330 * 107.66674 * 359.97438 * 4 3 2 7 7 C 1.50707 * 126.44603 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.47155 * 89.99760 * 7 6 4 9 9 C 1.46897 * 111.00072 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64099 * 325.70129 * 9 8 7 11 11 C 1.55157 * 110.72154 * 202.55614 * 9 8 7 12 12 C 1.54901 * 101.58186 * 206.13408 * 11 9 8 13 13 N 1.47424 * 104.83320 * 37.01184 * 12 11 9 14 14 C 1.34775 * 125.64581 * 155.90763 * 13 12 11 15 15 O 1.21283 * 119.99653 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00398 * 359.97369 * 14 13 12 17 17 S 1.81005 * 109.47422 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99988 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99792 * 179.97438 * 18 17 16 21 21 N 1.31637 * 120.00141 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47425 * 120.00180 * 22 20 18 25 25 H 1.48503 * 109.46932 * 240.00250 * 22 20 18 26 26 C 1.47319 * 108.73433 * 335.71502 * 13 12 11 27 27 O 1.33965 * 125.61722 * 179.68650 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.02664 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02261 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02892 * 1 2 3 31 31 H 1.08995 * 109.47502 * 89.97667 * 5 4 3 32 32 H 1.09008 * 109.46970 * 209.96955 * 5 4 3 33 33 H 1.08994 * 109.47198 * 329.96849 * 5 4 3 34 34 H 1.08998 * 109.46977 * 209.99993 * 7 6 4 35 35 H 1.09002 * 109.46836 * 329.99946 * 7 6 4 36 36 H 1.00904 * 111.00156 * 56.04469 * 8 7 6 37 37 H 1.08993 * 111.00893 * 324.21342 * 11 9 8 38 38 H 1.09004 * 110.99708 * 88.05964 * 11 9 8 39 39 H 1.09007 * 110.36610 * 155.85418 * 12 11 9 40 40 H 1.09007 * 110.37217 * 278.17451 * 12 11 9 41 41 H 1.09000 * 109.47409 * 300.00305 * 16 14 13 42 42 H 1.09008 * 109.47028 * 60.00221 * 16 14 13 43 43 H 0.96998 * 119.99723 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.06121 * 241.86827 * 26 13 12 45 45 H 1.09003 * 109.84808 * 120.61157 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5549 0.0018 8 7 5.1918 -1.8396 1.3869 9 6 6.3847 -2.6959 1.4265 10 1 6.3797 -3.4004 0.5948 11 6 6.4771 -3.4464 2.7813 12 6 8.0022 -3.6910 2.8980 13 7 8.6231 -2.4765 2.3385 14 6 9.8597 -2.0234 2.6247 15 8 10.2694 -1.0082 2.1027 16 6 10.7333 -2.7780 3.5934 17 16 12.3197 -1.9238 3.7669 18 6 13.1173 -2.9911 4.9199 19 1 12.6039 -3.8660 5.2904 20 6 14.4055 -2.7073 5.3519 21 7 15.0311 -1.6406 4.9007 22 14 15.2515 -3.8391 6.5737 23 1 14.3411 -4.9590 6.9234 24 1 16.4941 -4.3814 5.9679 25 1 15.5915 -3.0763 7.8016 26 6 7.6702 -1.8422 1.4112 27 8 2.2872 -1.0890 0.0060 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.0468 1.7912 1.0291 32 1 5.5825 1.0793 -0.5118 33 1 4.5134 2.5024 -0.5129 34 1 4.5694 -2.4900 -0.5113 35 1 5.6080 -1.0444 -0.5125 36 1 4.4310 -2.2547 1.9038 37 1 6.1178 -2.8220 3.5992 38 1 5.9319 -4.3896 2.7433 39 1 8.2875 -3.8162 3.9426 40 1 8.2916 -4.5669 2.3172 41 1 10.2402 -2.8285 4.5641 42 1 10.9029 -3.7877 3.2191 43 1 15.9311 -1.4422 5.2029 44 1 8.0876 -1.8185 0.4046 45 1 7.4466 -0.8292 1.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:43 Heat of formation + Delta-G solvation = -9.916796 kcal Electronic energy + Delta-G solvation = -26007.025774 eV Core-core repulsion = 22152.438835 eV Total energy + Delta-G solvation = -3854.586939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.67486 -39.88712 -37.81957 -35.70933 -35.41319 -33.14429 -32.42692 -31.14420 -29.69248 -29.68466 -28.58998 -26.85912 -25.47048 -24.39806 -22.97599 -22.07908 -21.09757 -20.82795 -19.33922 -17.74950 -17.29678 -16.97452 -16.89535 -16.51736 -15.71432 -15.18214 -14.99695 -14.88585 -14.80263 -14.45808 -13.91423 -13.89443 -13.64720 -13.52006 -13.40876 -13.18070 -13.09572 -13.00176 -12.65847 -12.53526 -12.42391 -12.23230 -11.87703 -11.77259 -11.58378 -11.17324 -11.11782 -11.06608 -11.01213 -10.80480 -10.75220 -9.80581 -9.41811 -9.10288 -9.07245 -8.83322 -8.49876 -8.22286 -6.49794 -6.21544 -3.92079 1.04001 2.24322 2.32484 2.87818 3.08226 3.21536 3.25557 3.30922 3.55880 3.62780 3.79578 4.09824 4.20536 4.31868 4.35903 4.52324 4.58926 4.76261 4.84216 4.87835 4.94098 4.99717 5.08777 5.12233 5.13684 5.18955 5.39325 5.42238 5.46221 5.48374 5.50038 5.58724 5.62140 5.67898 5.76823 5.78871 5.85972 5.92589 6.09045 6.13610 6.40597 6.46986 6.77659 7.42627 7.59872 7.66959 8.35544 8.57271 9.23798 10.85949 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.001788 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.783329 B =15652.356527 C =16216.651243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.484 5.484 4 C 0.017 3.983 5 C -0.072 4.072 6 C -0.059 4.059 7 C 0.149 3.851 8 N -0.674 5.674 9 C 0.074 3.926 10 H 0.066 0.934 11 C -0.134 4.134 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.548 3.452 15 O -0.514 6.514 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.118 3.882 27 O -0.204 6.204 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.349 0.651 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.545 -3.367 -9.992 31.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.104 4.104 5 C -0.129 4.129 6 C -0.111 4.111 7 C 0.020 3.980 8 N -0.306 5.306 9 C -0.036 4.036 10 H 0.084 0.916 11 C -0.172 4.172 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.337 3.663 15 O -0.388 6.388 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.006 4.006 27 O -0.091 6.091 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.169 0.831 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.564 -0.570 -10.681 30.502 hybrid contribution -0.152 -3.485 1.136 3.669 sum -28.716 -4.055 -9.545 30.532 Atomic orbital electron populations 1.20258 0.81300 1.05155 1.04659 1.26232 0.96368 0.78707 1.00302 1.70390 1.01823 1.30304 1.18912 1.21565 0.93235 0.92171 1.03413 1.20156 0.91531 0.97682 1.03550 1.22898 0.83107 0.94989 1.10112 1.20314 0.90017 0.96654 0.90978 1.60404 1.07958 1.50046 1.12226 1.22583 0.90166 0.92826 0.98012 0.91608 1.22978 0.96311 1.00726 0.97216 1.22230 0.91538 0.88176 1.00076 1.48509 1.14837 1.26983 1.46089 1.20019 0.79536 0.84832 0.81918 1.90712 1.71739 1.24500 1.51869 1.23508 1.02739 1.03462 1.00001 1.85417 1.04532 1.34885 1.58566 1.22902 1.02819 1.12712 1.29868 0.90883 1.24994 0.96244 0.95726 0.96625 1.70032 1.13092 1.24975 1.42142 0.86115 0.79167 0.80026 0.80173 1.19632 1.20564 1.20560 1.21890 0.87203 0.97713 0.93755 1.84350 1.16666 1.37781 1.70349 0.88952 0.89374 0.88055 0.90039 0.90529 0.90806 0.93051 0.87374 0.83122 0.89367 0.89833 0.89951 0.91276 0.89306 0.89330 0.92231 0.91817 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.74 8.34 -12.94 -0.11 1.63 16 3 N -0.48 -5.52 11.29 -7.36 -0.08 -5.60 16 4 C 0.02 0.18 7.11 -82.82 -0.59 -0.41 16 5 C -0.07 -0.64 10.22 36.00 0.37 -0.28 16 6 C -0.06 -0.56 6.90 -35.68 -0.25 -0.80 16 7 C 0.15 1.10 5.89 -4.97 -0.03 1.07 16 8 N -0.67 -5.17 6.29 -106.06 -0.67 -5.84 16 9 C 0.07 0.59 3.25 -65.88 -0.21 0.37 16 10 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 11 C -0.13 -0.99 6.50 -24.59 -0.16 -1.15 16 12 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 13 N -0.63 -8.95 3.33 -170.29 -0.57 -9.52 16 14 C 0.55 10.67 7.87 -10.99 -0.09 10.59 16 15 O -0.51 -12.08 16.19 5.56 0.09 -11.99 16 16 C -0.15 -3.01 5.16 36.00 0.19 -2.83 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 C 0.12 1.40 6.63 -2.90 -0.02 1.38 16 27 O -0.20 -1.97 10.78 5.35 0.06 -1.92 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.58 7.17 -51.92 -0.37 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.11 0.75 7.17 -51.93 -0.37 0.38 16 36 H 0.35 2.42 8.45 -39.29 -0.33 2.09 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.69 7.85 -51.92 -0.41 1.29 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -36.97 392.22 -8.99 -45.96 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.89 Total: -1.81 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.34 Total: -2.23 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.58 Total: -46.43 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.15 Total: -13.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.97 -8.99 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.044 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds