Wall clock time and date at job start Tue Mar 31 2020 22:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30253 * 125.61888 * 2 1 4 4 C 1.34471 * 108.70399 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.16823 * 180.02562 * 4 3 2 6 6 C 1.34330 * 107.66674 * 359.97438 * 4 3 2 7 7 C 1.50707 * 126.44603 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.47155 * 89.99760 * 7 6 4 9 9 C 1.46897 * 111.00072 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64099 * 325.70129 * 9 8 7 11 11 C 1.55157 * 110.72154 * 202.55614 * 9 8 7 12 12 C 1.54901 * 101.58186 * 206.13408 * 11 9 8 13 13 N 1.47424 * 104.83320 * 37.01184 * 12 11 9 14 14 C 1.34775 * 125.64581 * 155.90763 * 13 12 11 15 15 O 1.21283 * 119.99653 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00398 * 359.97369 * 14 13 12 17 17 S 1.81005 * 109.47422 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99988 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00066 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99792 * 179.97438 * 18 17 16 21 21 N 1.31637 * 120.00141 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47425 * 120.00180 * 22 20 18 25 25 H 1.48503 * 109.46932 * 240.00250 * 22 20 18 26 26 C 1.47319 * 108.73433 * 335.71502 * 13 12 11 27 27 O 1.33965 * 125.61722 * 179.68650 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.02664 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02261 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02892 * 1 2 3 31 31 H 1.08995 * 109.47502 * 89.97667 * 5 4 3 32 32 H 1.09008 * 109.46970 * 209.96955 * 5 4 3 33 33 H 1.08994 * 109.47198 * 329.96849 * 5 4 3 34 34 H 1.08998 * 109.46977 * 209.99993 * 7 6 4 35 35 H 1.09002 * 109.46836 * 329.99946 * 7 6 4 36 36 H 1.00904 * 111.00156 * 56.04469 * 8 7 6 37 37 H 1.08993 * 111.00893 * 324.21342 * 11 9 8 38 38 H 1.09004 * 110.99708 * 88.05964 * 11 9 8 39 39 H 1.09007 * 110.36610 * 155.85418 * 12 11 9 40 40 H 1.09007 * 110.37217 * 278.17451 * 12 11 9 41 41 H 1.09000 * 109.47409 * 300.00305 * 16 14 13 42 42 H 1.09008 * 109.47028 * 60.00221 * 16 14 13 43 43 H 0.96998 * 119.99723 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.06121 * 241.86827 * 26 13 12 45 45 H 1.09003 * 109.84808 * 120.61157 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5549 0.0018 8 7 5.1918 -1.8396 1.3869 9 6 6.3847 -2.6959 1.4265 10 1 6.3797 -3.4004 0.5948 11 6 6.4771 -3.4464 2.7813 12 6 8.0022 -3.6910 2.8980 13 7 8.6231 -2.4765 2.3385 14 6 9.8597 -2.0234 2.6247 15 8 10.2694 -1.0082 2.1027 16 6 10.7333 -2.7780 3.5934 17 16 12.3197 -1.9238 3.7669 18 6 13.1173 -2.9911 4.9199 19 1 12.6039 -3.8660 5.2904 20 6 14.4055 -2.7073 5.3519 21 7 15.0311 -1.6406 4.9007 22 14 15.2515 -3.8391 6.5737 23 1 14.3411 -4.9590 6.9234 24 1 16.4941 -4.3814 5.9679 25 1 15.5915 -3.0763 7.8016 26 6 7.6702 -1.8422 1.4112 27 8 2.2872 -1.0890 0.0060 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.0468 1.7912 1.0291 32 1 5.5825 1.0793 -0.5118 33 1 4.5134 2.5024 -0.5129 34 1 4.5694 -2.4900 -0.5113 35 1 5.6080 -1.0444 -0.5125 36 1 4.4310 -2.2547 1.9038 37 1 6.1178 -2.8220 3.5992 38 1 5.9319 -4.3896 2.7433 39 1 8.2875 -3.8162 3.9426 40 1 8.2916 -4.5669 2.3172 41 1 10.2402 -2.8285 4.5641 42 1 10.9029 -3.7877 3.2191 43 1 15.9311 -1.4422 5.2029 44 1 8.0876 -1.8185 0.4046 45 1 7.4466 -0.8292 1.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:42 Heat of formation + Delta-G solvation = -38.719186 kcal Electronic energy + Delta-G solvation = -26008.274739 eV Core-core repulsion = 22152.438835 eV Total energy + Delta-G solvation = -3855.835904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.36590 -41.04688 -38.95550 -36.55825 -36.15702 -34.58773 -33.85428 -32.15209 -30.87060 -30.28038 -29.50384 -27.89998 -27.50063 -25.13237 -23.84192 -22.77431 -21.85702 -21.52319 -20.66307 -19.60680 -18.17351 -17.93168 -17.71141 -17.57403 -16.88786 -16.59819 -16.49674 -16.02109 -15.63820 -15.56383 -15.28962 -14.73313 -14.52574 -14.38275 -14.23895 -14.13863 -13.85323 -13.77958 -13.64206 -13.46055 -13.41647 -13.17829 -13.12969 -12.91293 -12.87980 -12.61723 -12.56455 -12.26666 -11.90828 -11.82084 -11.70869 -11.52271 -11.15943 -10.98305 -10.27714 -9.73390 -9.68780 -9.48458 -8.68227 -8.34834 -6.13615 0.36220 1.23925 1.41846 1.45009 1.56464 1.57214 1.59126 1.64759 2.07590 2.27071 2.99427 3.03134 3.13499 3.22439 3.43459 3.59007 3.70660 3.85087 3.91592 4.04782 4.15775 4.23174 4.28835 4.33167 4.44029 4.44423 4.52238 4.62645 4.66691 4.68597 4.75150 4.77209 4.79341 4.87799 4.92910 4.94121 5.01356 5.13267 5.17328 5.35826 5.41690 5.41859 5.83678 6.19890 6.23012 6.39646 6.72937 7.06322 7.12086 8.74767 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.001788 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.783329 B =15652.356527 C =16216.651243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.521 5.521 4 C -0.010 4.010 5 C -0.069 4.069 6 C -0.059 4.059 7 C 0.153 3.847 8 N -0.681 5.681 9 C 0.090 3.910 10 H 0.090 0.910 11 C -0.121 4.121 12 C 0.091 3.909 13 N -0.617 5.617 14 C 0.544 3.456 15 O -0.569 6.569 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.112 3.888 27 O -0.208 6.208 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.358 0.642 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.835 -6.576 -9.465 33.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.016 4.016 3 N -0.252 5.252 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.112 4.112 7 C 0.025 3.975 8 N -0.315 5.315 9 C -0.020 4.020 10 H 0.108 0.892 11 C -0.159 4.159 12 C -0.031 4.031 13 N -0.352 5.352 14 C 0.332 3.668 15 O -0.447 6.447 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.011 4.011 27 O -0.096 6.096 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.178 0.822 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.924 -3.814 -10.154 32.771 hybrid contribution 0.378 -2.473 0.908 2.661 sum -30.546 -6.287 -9.246 32.528 Atomic orbital electron populations 1.20535 0.78157 1.06446 1.06158 1.27204 0.97894 0.78095 0.98394 1.70384 1.02507 1.31697 1.20659 1.21853 0.93484 0.93148 1.04530 1.20136 0.91616 0.97697 1.03132 1.23198 0.83672 0.94876 1.09458 1.20359 0.89137 0.97110 0.90942 1.60249 1.08169 1.50449 1.12656 1.22443 0.88053 0.92097 0.99412 0.89229 1.22967 0.94288 1.02240 0.96381 1.22650 0.93229 0.86850 1.00387 1.48454 1.13308 1.27971 1.45470 1.19798 0.81059 0.84238 0.81668 1.90687 1.73389 1.26745 1.53925 1.23298 0.98855 1.03254 1.01571 1.85622 1.09926 1.37807 1.59253 1.23231 1.03379 1.12844 1.29836 0.89809 1.26150 0.96976 0.97384 0.98663 1.70198 1.13627 1.27155 1.43836 0.84884 0.77949 0.77887 0.77086 1.17893 1.19890 1.19972 1.22084 0.88672 0.97620 0.92756 1.84362 1.16778 1.38017 1.70468 0.87194 0.87311 0.87451 0.90838 0.89526 0.90936 0.91140 0.87306 0.82178 0.89913 0.86175 0.89724 0.89114 0.87577 0.87373 0.91983 0.92162 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.39 16 2 C 0.19 3.28 8.34 88.34 0.74 4.02 16 3 N -0.52 -11.89 11.29 -291.99 -3.30 -15.18 16 4 C -0.01 -0.22 7.11 41.26 0.29 0.07 16 5 C -0.07 -1.28 10.22 71.24 0.73 -0.55 16 6 C -0.06 -1.07 6.90 24.79 0.17 -0.90 16 7 C 0.15 1.94 5.89 85.56 0.50 2.45 16 8 N -0.68 -8.87 6.29 -489.45 -3.08 -11.95 16 9 C 0.09 1.15 3.25 46.10 0.15 1.30 16 10 H 0.09 0.82 7.86 -2.39 -0.02 0.80 16 11 C -0.12 -1.30 6.50 31.98 0.21 -1.09 16 12 C 0.09 1.54 6.69 86.85 0.58 2.13 16 13 N -0.62 -16.89 3.33 -811.05 -2.70 -19.59 16 14 C 0.54 21.35 7.87 87.66 0.69 22.04 16 15 O -0.57 -27.86 16.19 -3.04 -0.05 -27.91 16 16 C -0.12 -4.85 5.16 71.23 0.37 -4.48 16 17 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 22 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.11 2.55 6.63 86.67 0.57 3.12 16 27 O -0.21 -3.73 10.78 -3.75 -0.04 -3.77 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.36 7.17 -2.38 -0.02 1.34 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.11 1.36 7.17 -2.39 -0.02 1.34 16 36 H 0.36 3.89 8.45 -89.69 -0.76 3.13 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.08 1.44 7.48 -2.38 -0.02 1.42 16 40 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.11 3.94 7.85 -2.40 -0.02 3.92 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -84.80 392.22 -0.91 -85.71 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.25 Total: 13.95 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.86 Total: -0.97 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -8.79 Total: -102.80 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.09 Total: -31.68 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.80 -0.91 -85.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -84.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds