Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30254 * 125.61900 * 2 1 4 4 C 1.34471 * 108.70398 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.16813 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47311 * 89.97667 * 5 4 3 7 7 C 1.46900 * 111.00199 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.64072 * 325.69976 * 7 6 5 9 9 C 1.55156 * 110.72380 * 202.55547 * 7 6 5 10 10 C 1.54908 * 101.58572 * 206.13495 * 9 7 6 11 11 N 1.47426 * 104.82742 * 37.00674 * 10 9 7 12 12 C 1.34780 * 125.64511 * 155.90819 * 11 10 9 13 13 O 1.21274 * 120.00236 * 179.97438 * 12 11 10 14 14 C 1.50711 * 119.99825 * 359.97438 * 12 11 10 15 15 S 1.80997 * 109.46731 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99853 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00034 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46957 * 60.00083 * 20 18 16 22 22 H 1.48497 * 109.46610 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47084 * 299.99464 * 20 18 16 24 24 C 1.47316 * 108.73951 * 335.71926 * 11 10 9 25 25 C 1.34330 * 107.66651 * 359.97438 * 4 3 2 26 26 C 1.50707 * 126.44640 * 180.02562 * 25 4 3 27 27 O 1.33965 * 125.61680 * 179.68725 * 2 1 3 28 28 H 1.09001 * 109.46953 * 89.99958 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99556 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00187 * 1 2 3 31 31 H 1.09008 * 109.47054 * 209.97252 * 5 4 3 32 32 H 1.08996 * 109.47290 * 329.97094 * 5 4 3 33 33 H 1.00902 * 111.00080 * 56.04713 * 6 5 4 34 34 H 1.09000 * 111.00221 * 324.21162 * 9 7 6 35 35 H 1.09005 * 111.00341 * 88.05914 * 9 7 6 36 36 H 1.08998 * 110.36920 * 155.84677 * 10 9 7 37 37 H 1.08997 * 110.36764 * 278.17470 * 10 9 7 38 38 H 1.08996 * 109.46722 * 299.99684 * 14 12 11 39 39 H 1.08996 * 109.46759 * 59.99738 * 14 12 11 40 40 H 0.97001 * 119.99869 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.06002 * 241.87162 * 24 11 10 42 42 H 1.09005 * 109.84826 * 120.61286 * 24 11 10 43 43 H 1.09000 * 109.46881 * 89.99630 * 26 25 4 44 44 H 1.08993 * 109.47306 * 209.99941 * 26 25 4 45 45 H 1.09003 * 109.46922 * 330.00508 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 7 5.1475 1.8671 1.3865 7 6 6.3219 2.7487 1.4264 8 1 6.9929 2.5328 0.5949 9 6 7.0653 2.6119 2.7814 10 6 7.7556 3.9937 2.8984 11 7 6.7831 4.9499 2.3386 12 6 6.7212 6.2655 2.6248 13 8 5.8757 6.9606 2.1025 14 6 7.7028 6.8728 3.5939 15 16 7.3640 8.6425 3.7661 16 6 8.6206 9.0837 4.9197 17 1 9.3009 8.3315 5.2911 18 6 8.7357 10.3977 5.3519 19 7 7.9063 11.3142 4.8996 20 14 10.0676 10.8652 6.5755 21 1 11.4006 10.5598 5.9968 22 1 9.9785 12.3173 6.8731 23 1 9.8825 10.0903 7.8287 24 6 5.8927 4.2309 1.4110 25 6 3.5698 -0.6756 0.0015 26 6 4.7937 -1.5549 0.0029 27 8 2.2872 -1.0890 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5825 1.0793 -0.5118 32 1 4.5134 2.5024 -0.5129 33 1 5.3163 1.0170 1.9031 34 1 6.3616 2.4562 3.5991 35 1 7.8018 1.8092 2.7437 36 1 7.9602 4.2284 3.9430 37 1 8.6781 4.0073 2.3180 38 1 7.6027 6.3872 4.5645 39 1 8.7168 6.7321 3.2199 40 1 7.9870 12.2326 5.2014 41 1 5.9956 4.6362 0.4043 42 1 4.8592 4.3212 1.7454 43 1 5.0881 -1.7661 1.0309 44 1 4.5699 -2.4900 -0.5104 45 1 5.6085 -1.0444 -0.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181107214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = -8.758187 kcal Electronic energy + Delta-G solvation = -25917.404958 eV Core-core repulsion = 22062.868260 eV Total energy + Delta-G solvation = -3854.536698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.69183 -39.81114 -37.78147 -36.02979 -34.66911 -33.41019 -32.40112 -30.91397 -30.56223 -29.61331 -28.22889 -26.45399 -25.43300 -24.66100 -23.05467 -22.02875 -20.99906 -20.77289 -19.26381 -17.70560 -17.28986 -17.06680 -16.74755 -16.48083 -15.49262 -15.16239 -14.93971 -14.87505 -14.77434 -14.38313 -14.09226 -13.94011 -13.81393 -13.76033 -13.28614 -13.20958 -13.07402 -12.85674 -12.74392 -12.51112 -12.41995 -12.27426 -11.81621 -11.71589 -11.51030 -11.29993 -11.02986 -11.01146 -10.99425 -10.74590 -10.73538 -9.79580 -9.35197 -9.03179 -8.98310 -8.80520 -8.42439 -8.19415 -6.46588 -6.18353 -3.88887 1.04304 2.25793 2.28395 2.94338 3.14538 3.25377 3.27489 3.31036 3.57052 3.65590 3.91694 4.17598 4.23698 4.28689 4.38526 4.48287 4.56741 4.77282 4.84399 4.86012 4.95559 4.99882 5.04321 5.12107 5.15436 5.16535 5.22539 5.26030 5.36246 5.47642 5.53132 5.63932 5.65662 5.68160 5.72287 5.82708 5.94641 5.97262 6.00517 6.17358 6.48692 6.63209 6.93677 7.45359 7.61913 7.74235 8.37921 8.63865 9.26449 10.89023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.001782 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.502574 B =15705.381514 C =16384.135361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.186 3.814 3 N -0.462 5.462 4 C -0.003 4.003 5 C 0.140 3.860 6 N -0.671 5.671 7 C 0.076 3.924 8 H 0.064 0.936 9 C -0.134 4.134 10 C 0.104 3.896 11 N -0.626 5.626 12 C 0.548 3.452 13 O -0.514 6.514 14 C -0.146 4.146 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.119 3.881 25 C -0.049 4.049 26 C -0.069 4.069 27 O -0.203 6.203 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.344 0.656 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -31.298 -10.072 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.192 5.192 4 C -0.123 4.123 5 C 0.011 3.989 6 N -0.303 5.303 7 C -0.035 4.035 8 H 0.082 0.918 9 C -0.172 4.172 10 C -0.020 4.020 11 N -0.364 5.364 12 C 0.336 3.664 13 O -0.388 6.388 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.005 4.005 25 C -0.103 4.103 26 C -0.125 4.125 27 O -0.091 6.091 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.257 -28.868 -10.765 31.898 hybrid contribution 2.762 -1.852 1.133 3.513 sum -5.496 -30.720 -9.633 32.661 Atomic orbital electron populations 1.20262 0.81216 1.05222 1.04662 1.26284 0.96449 0.78472 1.00934 1.70377 1.01516 1.29989 1.17297 1.21265 0.93285 0.91383 1.06390 1.20205 0.90495 0.97948 0.90247 1.60301 1.36875 1.20355 1.12755 1.22555 0.90023 0.93203 0.97673 0.91811 1.22978 0.99701 0.97187 0.97373 1.22221 0.92243 0.87569 0.99973 1.48517 1.34122 1.07695 1.46084 1.20016 0.84966 0.79466 0.81958 1.90712 1.36865 1.59373 1.51858 1.23504 1.00444 1.05711 0.99999 1.85423 1.44891 0.94562 1.58482 1.22822 1.18448 0.97168 1.29942 0.91001 1.24990 0.96641 0.95320 0.96631 1.70009 1.35789 1.02325 1.42128 0.86226 0.81079 0.77522 0.80678 1.19966 1.20814 1.19948 1.21888 0.95565 0.89412 0.93635 1.23179 0.84059 0.95029 1.08011 1.20289 0.90014 0.98410 1.03835 1.84373 1.16458 1.37929 1.70359 0.88963 0.89441 0.87905 0.93247 0.88828 0.83701 0.89456 0.89903 0.90041 0.91335 0.89336 0.89358 0.92139 0.91908 0.90121 0.89701 0.90234 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.19 1.77 8.34 -12.94 -0.11 1.66 16 3 N -0.46 -5.54 11.29 -7.36 -0.08 -5.63 16 4 C 0.00 -0.03 6.62 -82.82 -0.55 -0.58 16 5 C 0.14 1.20 5.88 -4.98 -0.03 1.17 16 6 N -0.67 -5.86 6.29 -106.06 -0.67 -6.53 16 7 C 0.08 0.67 3.25 -65.88 -0.21 0.45 16 8 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 9 C -0.13 -1.05 6.49 -24.58 -0.16 -1.21 16 10 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 11 N -0.63 -9.57 3.33 -170.28 -0.57 -10.13 16 12 C 0.55 11.15 7.87 -10.98 -0.09 11.06 16 13 O -0.51 -12.62 16.19 5.56 0.09 -12.53 16 14 C -0.15 -3.09 5.16 36.01 0.19 -2.90 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.12 1.59 6.63 -2.90 -0.02 1.57 16 25 C -0.05 -0.41 7.39 -35.68 -0.26 -0.67 16 26 C -0.07 -0.29 10.22 36.01 0.37 0.08 16 27 O -0.20 -1.93 10.78 5.35 0.06 -1.88 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.30 7.11 -51.92 -0.37 -0.07 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.34 2.43 8.45 -39.29 -0.33 2.10 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.86 7.48 -51.93 -0.39 0.48 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.26 8.03 -51.93 -0.42 0.85 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.25 7.17 -51.93 -0.37 -0.12 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -38.32 392.21 -8.96 -47.29 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.89 Total: -2.06 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.31 Total: -1.34 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.58 Total: -48.06 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.15 Total: -14.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.32 -8.96 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.530 kcal (2) G-P(sol) polarization free energy of solvation -38.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds