Wall clock time and date at job start Tue Mar 31 2020 22:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30254 * 125.61900 * 2 1 4 4 C 1.34471 * 108.70398 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.16813 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47311 * 89.97667 * 5 4 3 7 7 C 1.46900 * 111.00199 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.64072 * 325.69976 * 7 6 5 9 9 C 1.55156 * 110.72380 * 202.55547 * 7 6 5 10 10 C 1.54908 * 101.58572 * 206.13495 * 9 7 6 11 11 N 1.47426 * 104.82742 * 37.00674 * 10 9 7 12 12 C 1.34780 * 125.64511 * 155.90819 * 11 10 9 13 13 O 1.21274 * 120.00236 * 179.97438 * 12 11 10 14 14 C 1.50711 * 119.99825 * 359.97438 * 12 11 10 15 15 S 1.80997 * 109.46731 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99853 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00034 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46957 * 60.00083 * 20 18 16 22 22 H 1.48497 * 109.46610 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47084 * 299.99464 * 20 18 16 24 24 C 1.47316 * 108.73951 * 335.71926 * 11 10 9 25 25 C 1.34330 * 107.66651 * 359.97438 * 4 3 2 26 26 C 1.50707 * 126.44640 * 180.02562 * 25 4 3 27 27 O 1.33965 * 125.61680 * 179.68725 * 2 1 3 28 28 H 1.09001 * 109.46953 * 89.99958 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99556 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00187 * 1 2 3 31 31 H 1.09008 * 109.47054 * 209.97252 * 5 4 3 32 32 H 1.08996 * 109.47290 * 329.97094 * 5 4 3 33 33 H 1.00902 * 111.00080 * 56.04713 * 6 5 4 34 34 H 1.09000 * 111.00221 * 324.21162 * 9 7 6 35 35 H 1.09005 * 111.00341 * 88.05914 * 9 7 6 36 36 H 1.08998 * 110.36920 * 155.84677 * 10 9 7 37 37 H 1.08997 * 110.36764 * 278.17470 * 10 9 7 38 38 H 1.08996 * 109.46722 * 299.99684 * 14 12 11 39 39 H 1.08996 * 109.46759 * 59.99738 * 14 12 11 40 40 H 0.97001 * 119.99869 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.06002 * 241.87162 * 24 11 10 42 42 H 1.09005 * 109.84826 * 120.61286 * 24 11 10 43 43 H 1.09000 * 109.46881 * 89.99630 * 26 25 4 44 44 H 1.08993 * 109.47306 * 209.99941 * 26 25 4 45 45 H 1.09003 * 109.46922 * 330.00508 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 7 5.1475 1.8671 1.3865 7 6 6.3219 2.7487 1.4264 8 1 6.9929 2.5328 0.5949 9 6 7.0653 2.6119 2.7814 10 6 7.7556 3.9937 2.8984 11 7 6.7831 4.9499 2.3386 12 6 6.7212 6.2655 2.6248 13 8 5.8757 6.9606 2.1025 14 6 7.7028 6.8728 3.5939 15 16 7.3640 8.6425 3.7661 16 6 8.6206 9.0837 4.9197 17 1 9.3009 8.3315 5.2911 18 6 8.7357 10.3977 5.3519 19 7 7.9063 11.3142 4.8996 20 14 10.0676 10.8652 6.5755 21 1 11.4006 10.5598 5.9968 22 1 9.9785 12.3173 6.8731 23 1 9.8825 10.0903 7.8287 24 6 5.8927 4.2309 1.4110 25 6 3.5698 -0.6756 0.0015 26 6 4.7937 -1.5549 0.0029 27 8 2.2872 -1.0890 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5825 1.0793 -0.5118 32 1 4.5134 2.5024 -0.5129 33 1 5.3163 1.0170 1.9031 34 1 6.3616 2.4562 3.5991 35 1 7.8018 1.8092 2.7437 36 1 7.9602 4.2284 3.9430 37 1 8.6781 4.0073 2.3180 38 1 7.6027 6.3872 4.5645 39 1 8.7168 6.7321 3.2199 40 1 7.9870 12.2326 5.2014 41 1 5.9956 4.6362 0.4043 42 1 4.8592 4.3212 1.7454 43 1 5.0881 -1.7661 1.0309 44 1 4.5699 -2.4900 -0.5104 45 1 5.6085 -1.0444 -0.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181107214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:39 Heat of formation + Delta-G solvation = -39.355197 kcal Electronic energy + Delta-G solvation = -25918.731744 eV Core-core repulsion = 22062.868260 eV Total energy + Delta-G solvation = -3855.863484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.34574 -41.05572 -38.97514 -36.90148 -35.43552 -34.58964 -34.07317 -32.05462 -30.96298 -30.85417 -29.23592 -27.73054 -27.19910 -25.29578 -24.00508 -22.71728 -21.81888 -21.44894 -20.66821 -19.60501 -18.17902 -17.92262 -17.72143 -17.58822 -16.88449 -16.59480 -16.32067 -15.96934 -15.66292 -15.60110 -15.19620 -14.73939 -14.63206 -14.44580 -14.33118 -14.25843 -13.79832 -13.65955 -13.53323 -13.45942 -13.27805 -13.20669 -13.15277 -12.95469 -12.85884 -12.63764 -12.54922 -12.30427 -12.01832 -11.79908 -11.71203 -11.43794 -11.12829 -11.00308 -10.28912 -9.72094 -9.59892 -9.43117 -8.69287 -8.34273 -6.13888 0.42310 1.22784 1.44247 1.44683 1.54285 1.55327 1.58580 1.73233 2.07100 2.27443 2.99573 3.00942 3.22732 3.24237 3.45646 3.60102 3.76056 3.79789 3.92937 4.14947 4.17109 4.22709 4.31665 4.33815 4.42800 4.44452 4.47612 4.61099 4.63866 4.66812 4.68447 4.77315 4.84857 4.86867 4.89916 4.95956 5.10020 5.15726 5.21629 5.33879 5.35747 5.41106 5.94293 6.19526 6.34440 6.43214 6.79650 7.06124 7.10426 8.74917 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.001782 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.502574 B =15705.381514 C =16384.135361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.176 3.824 3 N -0.511 5.511 4 C -0.033 4.033 5 C 0.146 3.854 6 N -0.684 5.684 7 C 0.092 3.908 8 H 0.091 0.909 9 C -0.118 4.118 10 C 0.090 3.910 11 N -0.617 5.617 12 C 0.542 3.458 13 O -0.572 6.572 14 C -0.116 4.116 15 S -0.156 6.156 16 C -0.546 4.546 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.261 1.261 24 C 0.113 3.887 25 C -0.043 4.043 26 C -0.068 4.068 27 O -0.212 6.212 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.358 0.642 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -34.905 -9.250 36.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.031 4.031 3 N -0.241 5.241 4 C -0.152 4.152 5 C 0.017 3.983 6 N -0.318 5.318 7 C -0.019 4.019 8 H 0.109 0.891 9 C -0.156 4.156 10 C -0.032 4.032 11 N -0.352 5.352 12 C 0.330 3.670 13 O -0.451 6.451 14 C -0.267 4.267 15 S 0.071 5.929 16 C -0.694 4.694 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.823 3.177 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.010 4.010 25 C -0.096 4.096 26 C -0.125 4.125 27 O -0.100 6.100 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.609 -32.563 -9.941 34.505 hybrid contribution 1.870 -0.870 0.806 2.215 sum -3.738 -33.433 -9.135 34.860 Atomic orbital electron populations 1.20463 0.78772 1.06104 1.05923 1.27045 0.97796 0.78109 1.00103 1.70351 1.03041 1.31640 1.19059 1.21557 0.93089 0.92520 1.08047 1.20161 0.91083 0.96890 0.90125 1.60098 1.37142 1.21203 1.13369 1.22425 0.90277 0.89640 0.99520 0.89114 1.22977 1.00056 0.96494 0.96115 1.22687 0.92292 0.87808 1.00395 1.48485 1.34742 1.06594 1.45370 1.19890 0.84288 0.81078 0.81725 1.90685 1.39012 1.61355 1.54032 1.23283 1.01683 1.00299 1.01480 1.85663 1.46420 1.01486 1.59300 1.23161 1.18373 0.97962 1.29862 0.89711 1.26182 0.99287 0.95096 0.98717 1.70189 1.38009 1.02812 1.43836 0.84965 0.77670 0.77263 0.77849 1.18475 1.20423 1.18555 1.22049 0.93823 0.92812 0.92366 1.23925 0.84673 0.95118 1.05931 1.20533 0.88413 0.98212 1.05293 1.84393 1.17134 1.38045 1.70457 0.87414 0.87376 0.88106 0.90027 0.91446 0.82088 0.90123 0.85505 0.89615 0.88914 0.87463 0.87210 0.91980 0.92911 0.93279 0.87998 0.89284 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.18 3.37 8.34 88.34 0.74 4.11 16 3 N -0.51 -12.62 11.29 -291.98 -3.30 -15.92 16 4 C -0.03 -0.64 6.62 41.26 0.27 -0.37 16 5 C 0.15 2.33 5.88 85.56 0.50 2.83 16 6 N -0.68 -10.71 6.29 -489.45 -3.08 -13.79 16 7 C 0.09 1.38 3.25 46.10 0.15 1.53 16 8 H 0.09 0.96 7.86 -2.38 -0.02 0.94 16 9 C -0.12 -1.37 6.49 31.99 0.21 -1.16 16 10 C 0.09 1.63 6.69 86.85 0.58 2.22 16 11 N -0.62 -18.43 3.33 -811.03 -2.70 -21.13 16 12 C 0.54 22.52 7.87 87.66 0.69 23.21 16 13 O -0.57 -29.69 16.19 -3.01 -0.05 -29.74 16 14 C -0.12 -4.91 5.16 71.24 0.37 -4.55 16 15 S -0.16 -9.02 20.57 -56.49 -1.16 -10.18 16 16 C -0.55 -31.74 9.50 67.95 0.65 -31.09 16 17 H 0.08 4.53 7.80 -2.91 -0.02 4.50 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 20 Si 1.00 43.95 29.55 68.60 2.03 45.97 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 C 0.11 3.04 6.63 86.67 0.57 3.61 16 25 C -0.04 -0.65 7.39 24.79 0.18 -0.47 16 26 C -0.07 -0.35 10.22 71.24 0.73 0.38 16 27 O -0.21 -3.87 10.78 -3.76 -0.04 -3.91 16 28 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.73 7.11 -2.38 -0.02 0.72 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.36 3.97 8.45 -89.69 -0.76 3.21 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.09 1.53 7.48 -2.39 -0.02 1.51 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 4.10 7.85 -2.40 -0.02 4.08 16 39 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 40 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 1.63 8.03 -2.38 -0.02 1.61 16 43 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.11 0.16 7.17 -2.39 -0.02 0.15 16 Total: -1.00 -90.11 392.21 -0.92 -91.03 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.25 Total: 12.88 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.86 Total: 1.60 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -8.79 Total: -107.66 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.09 Total: -33.65 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -90.11 -0.92 -91.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.673 kcal (2) G-P(sol) polarization free energy of solvation -90.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds