Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34327 * 126.44383 * 2 1 4 4 N 1.34476 * 107.66759 * 179.72408 * 3 2 1 5 5 C 1.30260 * 108.70482 * 0.42735 * 4 3 2 6 6 C 1.50692 * 125.62162 * 179.83769 * 5 4 3 7 7 H 1.09000 * 109.47142 * 194.69455 * 6 5 4 8 8 C 1.52993 * 109.47298 * 74.69287 * 6 5 4 9 9 N 1.46901 * 109.46945 * 314.69108 * 6 5 4 10 10 C 1.46905 * 110.99870 * 205.00102 * 9 6 5 11 11 H 1.09006 * 110.64004 * 328.14539 * 10 9 6 12 12 C 1.55157 * 110.72086 * 205.00066 * 10 9 6 13 13 C 1.54907 * 101.58027 * 206.13659 * 12 10 9 14 14 N 1.47414 * 104.83516 * 37.01059 * 13 12 10 15 15 C 1.34783 * 125.65114 * 155.90710 * 14 13 12 16 16 O 1.21281 * 119.99793 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99695 * 359.97381 * 15 14 13 18 18 S 1.81001 * 109.46975 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99951 * 180.02562 * 18 17 15 20 20 H 1.08008 * 120.00281 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99943 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99651 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46966 * 90.00181 * 23 21 19 25 25 H 1.48501 * 109.46932 * 209.99869 * 23 21 19 26 26 H 1.48494 * 109.46965 * 330.00164 * 23 21 19 27 27 C 1.47023 * 108.70365 * 335.86751 * 14 13 12 28 28 O 1.33971 * 108.75519 * 359.57578 * 5 4 3 29 29 H 1.08996 * 109.46925 * 270.01776 * 1 2 3 30 30 H 1.08998 * 109.47194 * 30.02340 * 1 2 3 31 31 H 1.09007 * 109.46783 * 150.01870 * 1 2 3 32 32 H 1.08001 * 126.16478 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47161 * 300.00156 * 8 6 5 34 34 H 1.09006 * 109.47343 * 60.00098 * 8 6 5 35 35 H 1.09004 * 109.47587 * 180.02562 * 8 6 5 36 36 H 1.00901 * 111.00067 * 328.95277 * 9 6 5 37 37 H 1.08998 * 111.00504 * 324.21327 * 12 10 9 38 38 H 1.09006 * 111.00393 * 88.05910 * 12 10 9 39 39 H 1.09008 * 110.36430 * 155.85237 * 13 12 10 40 40 H 1.09004 * 110.36708 * 278.16576 * 13 12 10 41 41 H 1.09002 * 109.47445 * 299.99991 * 17 15 14 42 42 H 1.09003 * 109.47159 * 59.99888 * 17 15 14 43 43 H 0.97007 * 119.99140 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88754 * 241.64376 * 27 14 13 45 45 H 1.09004 * 109.87940 * 120.47343 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5766 -0.6548 0.0007 6 6 4.8005 -1.5340 0.0012 7 1 4.5165 -2.5522 -0.2647 8 6 5.4321 -1.5282 1.3947 9 7 5.7698 -1.0244 -0.9780 10 6 6.6590 -2.0964 -1.4454 11 1 6.8245 -2.8298 -0.6561 12 6 8.0073 -1.5128 -1.9442 13 6 8.4581 -2.5940 -2.9579 14 7 7.2144 -3.0410 -3.6109 15 6 7.1272 -3.6059 -4.8316 16 8 6.0462 -3.9367 -5.2708 17 6 8.3729 -3.8263 -5.6504 18 16 7.9299 -4.5969 -7.2271 19 6 9.5267 -4.7359 -7.9590 20 1 10.3981 -4.3876 -7.4243 21 6 9.6648 -5.2931 -9.2228 22 7 10.8576 -5.3965 -9.7697 23 14 8.1578 -5.8963 -10.1473 24 1 7.6045 -4.7891 -10.9678 25 1 8.5396 -7.0257 -11.0328 26 1 7.1316 -6.3536 -9.1763 27 6 6.0848 -2.7696 -2.7098 28 8 2.3075 -1.0841 0.0003 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.9822 2.1112 -0.0004 33 1 5.7160 -0.5100 1.6606 34 1 4.7128 -1.9063 2.1212 35 1 6.3176 -2.1637 1.3950 36 1 5.3012 -0.5797 -1.7530 37 1 7.8586 -0.5523 -2.4376 38 1 8.7211 -1.4231 -1.1252 39 1 9.1392 -2.1646 -3.6926 40 1 8.9342 -3.4258 -2.4387 41 1 8.8590 -2.8688 -5.8375 42 1 9.0547 -4.4797 -5.1060 43 1 10.9541 -5.7863 -10.6527 44 1 5.5921 -3.7039 -2.4410 45 1 5.3751 -2.1003 -3.1962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181107424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -5.248022 kcal Electronic energy + Delta-G solvation = -26258.359133 eV Core-core repulsion = 22403.974647 eV Total energy + Delta-G solvation = -3854.384486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.73293 -40.08476 -38.13693 -36.23365 -34.99102 -33.01478 -32.44413 -31.76857 -29.94473 -29.67942 -27.47197 -26.95302 -25.60948 -24.17372 -23.27210 -22.22715 -21.07339 -20.96447 -19.47117 -17.92109 -17.50355 -17.16456 -16.90074 -16.69933 -15.89627 -15.33758 -15.15198 -14.90085 -14.75043 -14.30873 -14.10063 -13.95654 -13.82053 -13.60232 -13.47808 -13.11044 -12.86270 -12.84331 -12.79494 -12.62835 -12.44737 -12.10797 -11.93910 -11.81548 -11.68161 -11.56598 -11.27317 -11.07967 -11.00748 -10.83715 -10.61665 -9.87019 -9.59041 -9.09139 -9.01383 -9.00119 -8.61464 -8.50649 -6.93093 -6.29390 -4.01325 1.00116 2.10292 2.30601 2.65633 2.91571 3.16037 3.32837 3.50063 3.52258 3.56840 3.66573 4.15365 4.32609 4.33754 4.34964 4.51371 4.60346 4.64985 4.71705 4.78189 4.87282 4.89951 5.00326 5.06405 5.08067 5.09694 5.18385 5.21447 5.31773 5.44864 5.47285 5.50766 5.56606 5.63622 5.71338 5.75229 5.79881 5.88931 5.93155 6.00119 6.27357 6.45581 6.78220 7.37543 7.52924 7.93674 8.40100 8.41203 9.16763 10.79733 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002044 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.560157 B =13695.000298 C =14704.157163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.046 4.046 4 N -0.454 5.454 5 C 0.176 3.824 6 C 0.185 3.815 7 H 0.074 0.926 8 C -0.136 4.136 9 N -0.655 5.655 10 C 0.074 3.926 11 H 0.100 0.900 12 C -0.116 4.116 13 C 0.097 3.903 14 N -0.622 5.622 15 C 0.546 3.454 16 O -0.519 6.519 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.083 3.917 28 O -0.201 6.201 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.184 0.816 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.353 0.647 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 11.366 26.092 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.184 4.184 4 N -0.183 5.183 5 C -0.031 4.031 6 C 0.074 3.926 7 H 0.092 0.908 8 C -0.194 4.194 9 N -0.288 5.288 10 C -0.036 4.036 11 H 0.118 0.882 12 C -0.155 4.155 13 C -0.027 4.027 14 N -0.360 5.360 15 C 0.335 3.665 16 O -0.393 6.393 17 C -0.267 4.267 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C -0.043 4.043 28 O -0.088 6.088 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.201 0.799 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.174 0.826 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.440 11.323 25.686 32.037 hybrid contribution -0.443 -0.675 -0.714 1.078 sum -15.883 10.649 24.971 31.452 Atomic orbital electron populations 1.20301 0.83868 1.04604 1.03845 1.23554 0.95127 0.84601 1.06669 1.23174 0.87836 1.00438 1.06999 1.70445 1.22604 1.08853 1.16353 1.26177 0.84067 0.90551 1.02298 1.19845 0.83124 0.93430 0.96172 0.90796 1.21830 1.00737 1.04100 0.92771 1.60729 1.21540 1.28117 1.18442 1.22807 0.93518 0.92284 0.95013 0.88217 1.22773 0.95530 0.98637 0.98540 1.22417 0.87444 0.97042 0.95778 1.48368 1.08173 1.62831 1.16587 1.20044 0.90976 0.76106 0.79408 1.90706 1.29621 1.49557 1.69447 1.23249 0.97821 1.05159 1.00500 1.84799 1.15075 1.78914 1.12917 1.22302 0.91429 1.47610 1.05470 0.89343 1.24711 0.96250 0.94113 0.96237 1.69941 1.22001 1.43176 1.16490 0.86736 0.83867 0.79685 0.81572 1.19206 1.19919 1.15957 1.22651 0.90320 1.00698 0.90605 1.84399 1.17777 1.36757 1.69835 0.89718 0.88807 0.90218 0.79890 0.90610 0.92109 0.90818 0.82561 0.89802 0.89172 0.89814 0.90998 0.88497 0.88453 0.91938 0.91561 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.09 16 2 C -0.05 -0.38 7.39 -35.69 -0.26 -0.64 16 3 C -0.05 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.45 -4.92 11.28 -11.10 -0.13 -5.04 16 5 C 0.18 1.75 6.84 -12.95 -0.09 1.66 16 6 C 0.18 1.45 3.03 -68.87 -0.21 1.24 16 7 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 8 C -0.14 -0.88 9.38 37.15 0.35 -0.53 16 9 N -0.65 -5.38 6.17 -99.04 -0.61 -5.99 16 10 C 0.07 0.59 3.02 -65.87 -0.20 0.39 16 11 H 0.10 0.65 7.23 -51.93 -0.38 0.27 16 12 C -0.12 -0.89 6.77 -24.58 -0.17 -1.06 16 13 C 0.10 0.95 6.69 -2.54 -0.02 0.93 16 14 N -0.62 -8.52 3.33 -170.52 -0.57 -9.09 16 15 C 0.55 10.18 7.87 -10.98 -0.09 10.09 16 16 O -0.52 -11.67 16.19 5.56 0.09 -11.58 16 17 C -0.12 -2.31 5.16 36.00 0.19 -2.13 16 18 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 20 H 0.09 2.66 8.03 -52.48 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 23 Si 0.86 21.90 27.74 -169.99 -4.71 17.19 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 C 0.08 0.93 6.59 -3.06 -0.02 0.91 16 28 O -0.20 -2.03 10.78 5.34 0.06 -1.97 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.38 7.51 -51.93 -0.39 -0.01 16 36 H 0.35 3.31 7.66 -39.29 -0.30 3.01 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.83 7.48 -51.92 -0.39 0.44 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.79 7.85 -51.92 -0.41 1.38 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -36.11 388.36 -8.26 -44.37 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.89 Total: -0.60 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.13 Total: -1.69 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.53 Total: -45.90 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.15 Total: -13.55 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.11 -8.26 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.125 kcal (2) G-P(sol) polarization free energy of solvation -36.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds