Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34327 * 126.44383 * 2 1 4 4 N 1.34476 * 107.66759 * 179.72408 * 3 2 1 5 5 C 1.30260 * 108.70482 * 0.42735 * 4 3 2 6 6 C 1.50692 * 125.62162 * 179.83769 * 5 4 3 7 7 H 1.09000 * 109.47142 * 194.69455 * 6 5 4 8 8 C 1.52993 * 109.47298 * 74.69287 * 6 5 4 9 9 N 1.46901 * 109.46945 * 314.69108 * 6 5 4 10 10 C 1.46905 * 110.99870 * 205.00102 * 9 6 5 11 11 H 1.09006 * 110.64004 * 328.14539 * 10 9 6 12 12 C 1.55157 * 110.72086 * 205.00066 * 10 9 6 13 13 C 1.54907 * 101.58027 * 206.13659 * 12 10 9 14 14 N 1.47414 * 104.83516 * 37.01059 * 13 12 10 15 15 C 1.34783 * 125.65114 * 155.90710 * 14 13 12 16 16 O 1.21281 * 119.99793 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99695 * 359.97381 * 15 14 13 18 18 S 1.81001 * 109.46975 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99951 * 180.02562 * 18 17 15 20 20 H 1.08008 * 120.00281 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99943 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99651 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46966 * 90.00181 * 23 21 19 25 25 H 1.48501 * 109.46932 * 209.99869 * 23 21 19 26 26 H 1.48494 * 109.46965 * 330.00164 * 23 21 19 27 27 C 1.47023 * 108.70365 * 335.86751 * 14 13 12 28 28 O 1.33971 * 108.75519 * 359.57578 * 5 4 3 29 29 H 1.08996 * 109.46925 * 270.01776 * 1 2 3 30 30 H 1.08998 * 109.47194 * 30.02340 * 1 2 3 31 31 H 1.09007 * 109.46783 * 150.01870 * 1 2 3 32 32 H 1.08001 * 126.16478 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47161 * 300.00156 * 8 6 5 34 34 H 1.09006 * 109.47343 * 60.00098 * 8 6 5 35 35 H 1.09004 * 109.47587 * 180.02562 * 8 6 5 36 36 H 1.00901 * 111.00067 * 328.95277 * 9 6 5 37 37 H 1.08998 * 111.00504 * 324.21327 * 12 10 9 38 38 H 1.09006 * 111.00393 * 88.05910 * 12 10 9 39 39 H 1.09008 * 110.36430 * 155.85237 * 13 12 10 40 40 H 1.09004 * 110.36708 * 278.16576 * 13 12 10 41 41 H 1.09002 * 109.47445 * 299.99991 * 17 15 14 42 42 H 1.09003 * 109.47159 * 59.99888 * 17 15 14 43 43 H 0.97007 * 119.99140 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.88754 * 241.64376 * 27 14 13 45 45 H 1.09004 * 109.87940 * 120.47343 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5766 -0.6548 0.0007 6 6 4.8005 -1.5340 0.0012 7 1 4.5165 -2.5522 -0.2647 8 6 5.4321 -1.5282 1.3947 9 7 5.7698 -1.0244 -0.9780 10 6 6.6590 -2.0964 -1.4454 11 1 6.8245 -2.8298 -0.6561 12 6 8.0073 -1.5128 -1.9442 13 6 8.4581 -2.5940 -2.9579 14 7 7.2144 -3.0410 -3.6109 15 6 7.1272 -3.6059 -4.8316 16 8 6.0462 -3.9367 -5.2708 17 6 8.3729 -3.8263 -5.6504 18 16 7.9299 -4.5969 -7.2271 19 6 9.5267 -4.7359 -7.9590 20 1 10.3981 -4.3876 -7.4243 21 6 9.6648 -5.2931 -9.2228 22 7 10.8576 -5.3965 -9.7697 23 14 8.1578 -5.8963 -10.1473 24 1 7.6045 -4.7891 -10.9678 25 1 8.5396 -7.0257 -11.0328 26 1 7.1316 -6.3536 -9.1763 27 6 6.0848 -2.7696 -2.7098 28 8 2.3075 -1.0841 0.0003 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.9822 2.1112 -0.0004 33 1 5.7160 -0.5100 1.6606 34 1 4.7128 -1.9063 2.1212 35 1 6.3176 -2.1637 1.3950 36 1 5.3012 -0.5797 -1.7530 37 1 7.8586 -0.5523 -2.4376 38 1 8.7211 -1.4231 -1.1252 39 1 9.1392 -2.1646 -3.6926 40 1 8.9342 -3.4258 -2.4387 41 1 8.8590 -2.8688 -5.8375 42 1 9.0547 -4.4797 -5.1060 43 1 10.9541 -5.7863 -10.6527 44 1 5.5921 -3.7039 -2.4410 45 1 5.3751 -2.1003 -3.1962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181107424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -33.120876 kcal Electronic energy + Delta-G solvation = -26259.567790 eV Core-core repulsion = 22403.974647 eV Total energy + Delta-G solvation = -3855.593144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.39517 -41.19619 -39.20968 -37.11412 -35.69493 -34.68694 -33.71799 -32.56853 -30.98449 -30.70206 -28.26696 -27.85776 -27.60048 -24.92111 -24.13908 -22.86269 -21.79369 -21.61906 -20.80356 -19.65029 -18.42768 -18.10273 -17.81730 -17.71174 -17.14156 -16.84330 -16.40862 -16.10654 -15.68091 -15.53180 -15.07324 -14.92934 -14.86927 -14.53029 -14.37602 -13.99352 -13.92258 -13.70762 -13.55997 -13.36997 -13.31840 -13.25823 -13.06063 -13.02155 -12.73915 -12.70170 -12.50096 -12.34795 -12.22197 -11.89199 -11.72476 -11.53109 -11.18680 -11.09663 -10.56255 -9.85376 -9.69421 -9.60564 -9.03212 -8.52839 -6.24409 0.35982 0.93452 1.29825 1.42432 1.46181 1.49560 1.53944 1.64000 2.00882 2.23566 2.65563 2.85183 2.89329 3.01178 3.37482 3.60519 3.72443 3.83538 3.95498 4.05337 4.06201 4.14281 4.14977 4.29922 4.35407 4.38622 4.39944 4.54779 4.60531 4.60830 4.63836 4.79244 4.83410 4.92039 5.00981 5.08282 5.14259 5.21660 5.26025 5.28065 5.34762 5.69634 5.82196 6.05148 6.10101 6.29746 6.70665 6.92154 7.00244 8.59355 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002044 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.560157 B =13695.000298 C =14704.157163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.049 4.049 3 C -0.065 4.065 4 N -0.480 5.480 5 C 0.163 3.837 6 C 0.184 3.816 7 H 0.082 0.918 8 C -0.130 4.130 9 N -0.652 5.652 10 C 0.089 3.911 11 H 0.125 0.875 12 C -0.106 4.106 13 C 0.087 3.913 14 N -0.612 5.612 15 C 0.545 3.455 16 O -0.568 6.568 17 C -0.101 4.101 18 S -0.179 6.179 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.239 1.239 27 C 0.079 3.921 28 O -0.217 6.217 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.205 0.795 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.345 0.655 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.063 0.937 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 11.744 28.076 34.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.203 4.203 4 N -0.209 5.209 5 C -0.044 4.044 6 C 0.073 3.927 7 H 0.100 0.900 8 C -0.188 4.188 9 N -0.285 5.285 10 C -0.022 4.022 11 H 0.142 0.858 12 C -0.144 4.144 13 C -0.035 4.035 14 N -0.347 5.347 15 C 0.333 3.667 16 O -0.447 6.447 17 C -0.251 4.251 18 S 0.048 5.952 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.552 5.552 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.163 1.163 27 C -0.046 4.046 28 O -0.104 6.104 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.101 11.731 27.727 34.141 hybrid contribution -0.225 -0.673 -1.165 1.364 sum -16.326 11.058 26.562 33.081 Atomic orbital electron populations 1.20510 0.81167 1.05620 1.05172 1.24308 0.96616 0.83980 1.05253 1.23616 0.87413 1.01756 1.07550 1.70412 1.23863 1.09496 1.17124 1.26577 0.84579 0.90703 1.02511 1.20010 0.82573 0.93318 0.96760 0.90050 1.21797 1.01450 1.03677 0.91846 1.60793 1.21731 1.27926 1.18039 1.22822 0.93155 0.92382 0.93815 0.85756 1.22761 0.95769 0.97278 0.98579 1.22787 0.85903 0.98561 0.96247 1.48330 1.10735 1.60485 1.15174 1.19745 0.89585 0.76625 0.80754 1.90683 1.30782 1.52207 1.70999 1.23195 0.99013 1.05483 0.97458 1.84743 1.13483 1.80132 1.16853 1.22423 0.92188 1.47168 1.05724 0.91774 1.25544 0.98896 0.94333 0.97150 1.70014 1.23778 1.44155 1.17264 0.85882 0.80449 0.79730 0.80398 1.18770 1.18155 1.16250 1.22881 0.89591 1.00679 0.91455 1.84402 1.18176 1.37716 1.70109 0.88101 0.86817 0.90115 0.77807 0.91947 0.91620 0.88969 0.83457 0.90599 0.86302 0.89738 0.88791 0.87097 0.86827 0.91326 0.91826 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.43 71.24 0.74 0.29 16 2 C -0.05 -0.76 7.39 24.79 0.18 -0.57 16 3 C -0.07 -1.10 11.80 83.39 0.98 -0.12 16 4 N -0.48 -10.24 11.28 -303.83 -3.43 -13.67 16 5 C 0.16 3.16 6.84 88.34 0.60 3.76 16 6 C 0.18 2.62 3.03 44.16 0.13 2.75 16 7 H 0.08 1.03 7.86 -2.39 -0.02 1.01 16 8 C -0.13 -1.41 9.38 71.98 0.68 -0.74 16 9 N -0.65 -9.63 6.17 -467.24 -2.88 -12.52 16 10 C 0.09 1.16 3.02 46.10 0.14 1.30 16 11 H 0.12 1.10 7.23 -2.38 -0.02 1.08 16 12 C -0.11 -1.28 6.77 31.99 0.22 -1.07 16 13 C 0.09 1.46 6.69 86.86 0.58 2.04 16 14 N -0.61 -15.85 3.33 -811.80 -2.70 -18.56 16 15 C 0.54 20.00 7.87 87.65 0.69 20.69 16 16 O -0.57 -25.76 16.19 -3.03 -0.05 -25.81 16 17 C -0.10 -3.92 5.16 71.23 0.37 -3.56 16 18 S -0.18 -9.22 18.55 -56.49 -1.05 -10.26 16 19 C -0.53 -30.89 10.04 67.95 0.68 -30.20 16 20 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 21 C 0.05 2.74 5.50 84.86 0.47 3.20 16 22 N -0.91 -55.67 13.97 21.65 0.30 -55.37 16 23 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 27 C 0.08 1.68 6.59 86.73 0.57 2.25 16 28 O -0.22 -4.30 10.78 -3.80 -0.04 -4.34 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.09 0.65 7.51 -2.39 -0.02 0.63 16 36 H 0.35 6.24 7.66 -89.69 -0.69 5.56 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 1.46 7.48 -2.38 -0.02 1.44 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 4.00 7.85 -2.39 -0.02 3.98 16 42 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 43 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.24 7.49 -2.38 -0.02 1.22 16 Total: -1.00 -80.00 388.36 -0.63 -80.63 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.28 Total: 12.59 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 7.04 Total: 0.04 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -8.71 Total: -100.10 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.09 Total: -30.15 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.26 kcal Total: -80.00 -0.63 -80.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.506 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds