Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34334 * 126.43831 * 2 1 4 4 N 1.34485 * 107.66149 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70349 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47205 * 165.02767 * 6 5 4 8 8 C 1.53001 * 109.47182 * 285.02745 * 6 5 4 9 9 N 1.46901 * 109.47088 * 45.02485 * 6 5 4 10 10 C 1.46903 * 110.99601 * 154.99851 * 9 6 5 11 11 H 1.08995 * 110.64533 * 328.14166 * 10 9 6 12 12 C 1.55161 * 110.71672 * 204.99847 * 10 9 6 13 13 C 1.54913 * 101.58234 * 206.13554 * 12 10 9 14 14 N 1.47420 * 104.82896 * 37.01253 * 13 12 10 15 15 C 1.34775 * 125.64895 * 155.90993 * 14 13 12 16 16 O 1.21280 * 120.00628 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99830 * 359.96745 * 15 14 13 18 18 S 1.80999 * 109.47363 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00034 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99949 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00358 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47179 * 90.00106 * 23 21 19 25 25 H 1.48503 * 109.46840 * 209.99990 * 23 21 19 26 26 H 1.48506 * 109.47030 * 330.00114 * 23 21 19 27 27 C 1.47018 * 108.70745 * 335.86979 * 14 13 12 28 28 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47142 * 90.01986 * 1 2 3 30 30 H 1.08997 * 109.47312 * 210.02061 * 1 2 3 31 31 H 1.09000 * 109.47478 * 330.02834 * 1 2 3 32 32 H 1.07995 * 126.16873 * 0.24016 * 3 2 1 33 33 H 1.08997 * 109.47299 * 299.99755 * 8 6 5 34 34 H 1.08990 * 109.47372 * 60.00337 * 8 6 5 35 35 H 1.09000 * 109.47024 * 180.02562 * 8 6 5 36 36 H 1.00905 * 111.00179 * 278.94895 * 9 6 5 37 37 H 1.08998 * 111.00868 * 324.21182 * 12 10 9 38 38 H 1.09007 * 110.99948 * 88.06417 * 12 10 9 39 39 H 1.08997 * 110.36340 * 155.84749 * 13 12 10 40 40 H 1.08998 * 110.36503 * 278.17289 * 13 12 10 41 41 H 1.08997 * 109.47514 * 300.01089 * 17 15 14 42 42 H 1.09006 * 109.46840 * 60.00464 * 17 15 14 43 43 H 0.96999 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.88498 * 241.64580 * 27 14 13 45 45 H 1.08999 * 109.88694 * 120.47634 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0004 6 6 4.8004 -1.5339 0.0003 7 1 4.5163 -2.5522 0.2656 8 6 5.4329 -1.5275 -1.3928 9 7 5.7692 -1.0247 0.9802 10 6 6.6580 -2.0968 1.4477 11 1 6.1354 -3.0533 1.4554 12 6 7.2214 -1.7679 2.8555 13 6 8.5500 -2.5645 2.8527 14 7 9.0600 -2.4428 1.4749 15 6 10.3496 -2.5613 1.1013 16 8 10.6562 -2.4421 -0.0660 17 6 11.4105 -2.8417 2.1341 18 16 13.0271 -2.9432 1.3264 19 6 14.0480 -3.2692 2.7250 20 1 13.6083 -3.3460 3.7084 21 6 15.4176 -3.4263 2.5630 22 7 16.1804 -3.6694 3.6078 23 14 16.1783 -3.2927 0.8620 24 1 16.5600 -1.8817 0.5999 25 1 17.3862 -4.1536 0.7911 26 1 15.1934 -3.7366 -0.1569 27 6 7.9290 -2.1716 0.5756 28 8 2.3074 -1.0840 -0.0009 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3634 0.8902 0.5134 32 1 1.9821 2.1113 0.0037 33 1 4.7142 -1.9053 -2.1200 34 1 5.7171 -0.5093 -1.6582 35 1 6.3179 -2.1638 -1.3930 36 1 6.2997 -0.2560 0.5984 37 1 7.4070 -0.6991 2.9622 38 1 6.5524 -2.1267 3.6377 39 1 9.2560 -2.1271 3.5586 40 1 8.3657 -3.6104 3.0979 41 1 11.4223 -2.0381 2.8704 42 1 11.1925 -3.7869 2.6315 43 1 17.1375 -3.7788 3.4946 44 1 7.8324 -2.9775 -0.1520 45 1 8.0827 -1.2224 0.0623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181107426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = -6.025675 kcal Electronic energy + Delta-G solvation = -26177.287740 eV Core-core repulsion = 22322.869532 eV Total energy + Delta-G solvation = -3854.418207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.64576 -40.12210 -38.19745 -36.25852 -34.92739 -32.99547 -32.44258 -31.76592 -29.78822 -29.67057 -27.51027 -26.92610 -25.60700 -24.05920 -23.37910 -22.19783 -21.31819 -20.95107 -19.48138 -17.91418 -17.47985 -17.08339 -16.75121 -16.61251 -15.67321 -15.42185 -15.19008 -14.94896 -14.74011 -14.46138 -14.04420 -13.87813 -13.76264 -13.67085 -13.54337 -13.22854 -12.97962 -12.82219 -12.81697 -12.59597 -12.38759 -11.96414 -11.94330 -11.86968 -11.77207 -11.54837 -11.27153 -11.09732 -11.00566 -10.77580 -10.61247 -9.86696 -9.58770 -9.10861 -9.00645 -8.93813 -8.61708 -8.50389 -6.92747 -6.29144 -4.01123 1.08488 2.13801 2.39029 2.66626 2.91932 3.17044 3.33204 3.50352 3.56992 3.65997 3.72546 4.19138 4.27982 4.33095 4.36800 4.46041 4.54199 4.64889 4.71459 4.76054 4.88310 4.90927 4.96968 5.03471 5.07907 5.09985 5.15454 5.19523 5.23870 5.45350 5.47518 5.49957 5.56046 5.64697 5.70456 5.70982 5.75459 5.88093 5.99282 6.00504 6.28036 6.45180 6.82927 7.45093 7.52905 7.93820 8.40404 8.41403 9.17008 10.80013 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.001809 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.500104 B =15474.936134 C =15866.170682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.054 4.054 3 C -0.042 4.042 4 N -0.466 5.466 5 C 0.204 3.796 6 C 0.183 3.817 7 H 0.107 0.893 8 C -0.183 4.183 9 N -0.662 5.662 10 C 0.078 3.922 11 H 0.098 0.902 12 C -0.119 4.119 13 C 0.097 3.903 14 N -0.623 5.623 15 C 0.547 3.453 16 O -0.518 6.518 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.083 3.917 28 O -0.203 6.203 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.360 0.640 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.067 0.933 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.013 5.216 -4.906 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C -0.181 4.181 4 N -0.194 5.194 5 C -0.004 4.004 6 C 0.072 3.928 7 H 0.125 0.875 8 C -0.242 4.242 9 N -0.294 5.294 10 C -0.032 4.032 11 H 0.116 0.884 12 C -0.157 4.157 13 C -0.026 4.026 14 N -0.360 5.360 15 C 0.335 3.665 16 O -0.393 6.393 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.042 4.042 28 O -0.090 6.090 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.199 0.801 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.182 0.818 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.183 5.627 -6.054 33.227 hybrid contribution 0.065 -0.480 0.126 0.501 sum -32.117 5.147 -5.928 33.063 Atomic orbital electron populations 1.20258 0.84047 1.04375 1.03711 1.23452 0.94985 0.84654 1.07655 1.23109 0.87922 1.00307 1.06768 1.70374 1.22713 1.09125 1.17228 1.26035 0.83830 0.90260 1.00290 1.19739 0.85354 0.95146 0.92595 0.87526 1.22607 1.01864 1.04061 0.95675 1.60271 1.19142 1.09858 1.40145 1.22770 0.90791 0.94701 0.94987 0.88403 1.22798 0.95249 1.01602 0.96066 1.22403 0.95634 1.00525 0.84083 1.48383 1.05818 1.73148 1.08672 1.20027 0.81085 0.75751 0.89636 1.90706 1.80375 1.49053 1.19137 1.23254 0.97719 1.05278 1.00533 1.84792 0.97192 1.94237 1.15423 1.22307 0.94362 1.56423 0.93793 0.89361 1.24703 0.95998 0.93191 0.97341 1.69935 1.05669 1.46471 1.29560 0.86743 0.80603 0.79443 0.85104 1.19198 1.19918 1.15947 1.22737 0.86233 1.01629 0.93605 1.84361 1.17791 1.36713 1.70095 0.89903 0.90380 0.88971 0.80145 0.91326 0.90911 0.90335 0.81787 0.89785 0.89355 0.89825 0.91032 0.88516 0.88487 0.91936 0.91435 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.05 -0.43 7.39 -35.68 -0.26 -0.69 16 3 C -0.04 -0.37 11.80 -17.77 -0.21 -0.58 16 4 N -0.47 -5.07 11.28 -11.10 -0.13 -5.19 16 5 C 0.20 1.99 7.19 -12.95 -0.09 1.89 16 6 C 0.18 1.37 3.13 -68.87 -0.22 1.16 16 7 H 0.11 0.65 7.44 -51.93 -0.39 0.27 16 8 C -0.18 -1.26 8.98 37.16 0.33 -0.93 16 9 N -0.66 -5.26 6.12 -99.03 -0.61 -5.87 16 10 C 0.08 0.59 3.25 -65.87 -0.21 0.38 16 11 H 0.10 0.62 7.44 -51.93 -0.39 0.24 16 12 C -0.12 -0.92 6.77 -24.58 -0.17 -1.08 16 13 C 0.10 0.94 6.69 -2.53 -0.02 0.93 16 14 N -0.62 -8.29 3.33 -170.52 -0.57 -8.86 16 15 C 0.55 10.00 7.87 -10.98 -0.09 9.91 16 16 O -0.52 -11.42 16.19 5.56 0.09 -11.33 16 17 C -0.12 -2.30 5.16 36.01 0.19 -2.12 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.13 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 C 0.08 0.88 5.26 -3.06 -0.02 0.86 16 28 O -0.20 -1.96 10.78 5.37 0.06 -1.90 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 35 H 0.08 0.53 6.28 -51.93 -0.33 0.20 16 36 H 0.36 3.08 7.78 -39.29 -0.31 2.78 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.77 7.85 -51.92 -0.41 1.37 16 42 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 45 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -36.15 385.31 -8.23 -44.39 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.78 Total: -0.63 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.17 Total: -2.15 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.52 Total: -45.67 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.15 Total: -13.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.15 -8.23 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.362 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds