Wall clock time and date at job start Tue Mar 31 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34334 * 126.43831 * 2 1 4 4 N 1.34485 * 107.66149 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70349 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47205 * 165.02767 * 6 5 4 8 8 C 1.53001 * 109.47182 * 285.02745 * 6 5 4 9 9 N 1.46901 * 109.47088 * 45.02485 * 6 5 4 10 10 C 1.46903 * 110.99601 * 154.99851 * 9 6 5 11 11 H 1.08995 * 110.64533 * 328.14166 * 10 9 6 12 12 C 1.55161 * 110.71672 * 204.99847 * 10 9 6 13 13 C 1.54913 * 101.58234 * 206.13554 * 12 10 9 14 14 N 1.47420 * 104.82896 * 37.01253 * 13 12 10 15 15 C 1.34775 * 125.64895 * 155.90993 * 14 13 12 16 16 O 1.21280 * 120.00628 * 179.97438 * 15 14 13 17 17 C 1.50703 * 119.99830 * 359.96745 * 15 14 13 18 18 S 1.80999 * 109.47363 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00034 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99949 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00358 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99914 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47179 * 90.00106 * 23 21 19 25 25 H 1.48503 * 109.46840 * 209.99990 * 23 21 19 26 26 H 1.48506 * 109.47030 * 330.00114 * 23 21 19 27 27 C 1.47018 * 108.70745 * 335.86979 * 14 13 12 28 28 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47142 * 90.01986 * 1 2 3 30 30 H 1.08997 * 109.47312 * 210.02061 * 1 2 3 31 31 H 1.09000 * 109.47478 * 330.02834 * 1 2 3 32 32 H 1.07995 * 126.16873 * 0.24016 * 3 2 1 33 33 H 1.08997 * 109.47299 * 299.99755 * 8 6 5 34 34 H 1.08990 * 109.47372 * 60.00337 * 8 6 5 35 35 H 1.09000 * 109.47024 * 180.02562 * 8 6 5 36 36 H 1.00905 * 111.00179 * 278.94895 * 9 6 5 37 37 H 1.08998 * 111.00868 * 324.21182 * 12 10 9 38 38 H 1.09007 * 110.99948 * 88.06417 * 12 10 9 39 39 H 1.08997 * 110.36340 * 155.84749 * 13 12 10 40 40 H 1.08998 * 110.36503 * 278.17289 * 13 12 10 41 41 H 1.08997 * 109.47514 * 300.01089 * 17 15 14 42 42 H 1.09006 * 109.46840 * 60.00464 * 17 15 14 43 43 H 0.96999 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.88498 * 241.64580 * 27 14 13 45 45 H 1.08999 * 109.88694 * 120.47634 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0004 6 6 4.8004 -1.5339 0.0003 7 1 4.5163 -2.5522 0.2656 8 6 5.4329 -1.5275 -1.3928 9 7 5.7692 -1.0247 0.9802 10 6 6.6580 -2.0968 1.4477 11 1 6.1354 -3.0533 1.4554 12 6 7.2214 -1.7679 2.8555 13 6 8.5500 -2.5645 2.8527 14 7 9.0600 -2.4428 1.4749 15 6 10.3496 -2.5613 1.1013 16 8 10.6562 -2.4421 -0.0660 17 6 11.4105 -2.8417 2.1341 18 16 13.0271 -2.9432 1.3264 19 6 14.0480 -3.2692 2.7250 20 1 13.6083 -3.3460 3.7084 21 6 15.4176 -3.4263 2.5630 22 7 16.1804 -3.6694 3.6078 23 14 16.1783 -3.2927 0.8620 24 1 16.5600 -1.8817 0.5999 25 1 17.3862 -4.1536 0.7911 26 1 15.1934 -3.7366 -0.1569 27 6 7.9290 -2.1716 0.5756 28 8 2.3074 -1.0840 -0.0009 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3634 0.8902 0.5134 32 1 1.9821 2.1113 0.0037 33 1 4.7142 -1.9053 -2.1200 34 1 5.7171 -0.5093 -1.6582 35 1 6.3179 -2.1638 -1.3930 36 1 6.2997 -0.2560 0.5984 37 1 7.4070 -0.6991 2.9622 38 1 6.5524 -2.1267 3.6377 39 1 9.2560 -2.1271 3.5586 40 1 8.3657 -3.6104 3.0979 41 1 11.4223 -2.0381 2.8704 42 1 11.1925 -3.7869 2.6315 43 1 17.1375 -3.7788 3.4946 44 1 7.8324 -2.9775 -0.1520 45 1 8.0827 -1.2224 0.0623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181107426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:35 Heat of formation + Delta-G solvation = -33.958761 kcal Electronic energy + Delta-G solvation = -26178.499009 eV Core-core repulsion = 22322.869532 eV Total energy + Delta-G solvation = -3855.629477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.28221 -41.19045 -39.24695 -37.13494 -35.60684 -34.68086 -33.66402 -32.55425 -31.02779 -30.45299 -28.35925 -27.83917 -27.51696 -24.70064 -24.31984 -22.79788 -21.98337 -21.61994 -20.79348 -19.64453 -18.39285 -18.02011 -17.72697 -17.53378 -17.13080 -16.65756 -16.29360 -16.16030 -15.69340 -15.41065 -15.34331 -14.91187 -14.81091 -14.48261 -14.21687 -14.11967 -13.93136 -13.73940 -13.63678 -13.36537 -13.24536 -13.20896 -13.08803 -13.01940 -12.68919 -12.62540 -12.51655 -12.40954 -12.24817 -11.88417 -11.73350 -11.44560 -11.17909 -11.06065 -10.55063 -9.83845 -9.66748 -9.52560 -9.01835 -8.52161 -6.23582 0.47158 0.95053 1.30736 1.43728 1.49395 1.51173 1.58594 1.74198 2.04474 2.24390 2.66867 2.86054 3.03940 3.10345 3.42999 3.60164 3.77454 3.80619 3.96426 4.00596 4.12675 4.13792 4.17419 4.28420 4.35112 4.40158 4.40657 4.52409 4.59689 4.68170 4.69693 4.75971 4.78741 4.80792 5.04663 5.06972 5.12708 5.19104 5.21867 5.31143 5.39529 5.70128 5.83597 6.10626 6.14823 6.32363 6.80615 6.92927 7.03562 8.60122 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.001809 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.500104 B =15474.936134 C =15866.170682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.052 4.052 3 C -0.067 4.067 4 N -0.495 5.495 5 C 0.191 3.809 6 C 0.185 3.815 7 H 0.125 0.875 8 C -0.176 4.176 9 N -0.663 5.663 10 C 0.092 3.908 11 H 0.121 0.879 12 C -0.109 4.109 13 C 0.088 3.912 14 N -0.613 5.613 15 C 0.546 3.454 16 O -0.565 6.565 17 C -0.102 4.102 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.238 1.238 27 C 0.080 3.920 28 O -0.214 6.214 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.200 0.800 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.355 0.645 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.069 0.931 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.574 4.982 -4.992 36.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C -0.205 4.205 4 N -0.224 5.224 5 C -0.017 4.017 6 C 0.074 3.926 7 H 0.143 0.857 8 C -0.235 4.235 9 N -0.294 5.294 10 C -0.018 4.018 11 H 0.139 0.861 12 C -0.148 4.148 13 C -0.034 4.034 14 N -0.348 5.348 15 C 0.334 3.666 16 O -0.444 6.444 17 C -0.253 4.253 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.045 4.045 28 O -0.101 6.101 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.217 0.783 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.177 0.823 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -34.802 5.395 -6.100 35.742 hybrid contribution 0.640 -0.352 0.240 0.769 sum -34.162 5.043 -5.860 35.026 Atomic orbital electron populations 1.20476 0.81149 1.05658 1.04961 1.24223 0.96526 0.83948 1.05829 1.23534 0.87561 1.01663 1.07717 1.70341 1.24069 1.09961 1.18057 1.26400 0.84431 0.90314 1.00555 1.19847 0.84576 0.95584 0.92574 0.85687 1.22531 1.01987 1.03279 0.95718 1.60278 1.18973 1.09762 1.40430 1.22753 0.89356 0.95670 0.94022 0.86092 1.22776 0.94355 1.00906 0.96719 1.22741 0.96529 1.02268 0.81855 1.48334 1.04772 1.70676 1.11002 1.19683 0.82436 0.76059 0.88440 1.90684 1.81444 1.51749 1.20538 1.23205 0.94649 1.06693 1.00745 1.84719 1.00756 1.94305 1.15234 1.22441 0.95214 1.56068 0.93951 0.91864 1.25532 0.96536 0.92903 1.00806 1.70008 1.06327 1.47466 1.31500 0.85890 0.80107 0.79804 0.80706 1.18758 1.18178 1.16173 1.22975 0.86436 1.01194 0.93877 1.84366 1.18001 1.37496 1.70264 0.88524 0.89761 0.86983 0.78302 0.90807 0.92239 0.90077 0.82332 0.90564 0.86946 0.89852 0.88966 0.87210 0.86960 0.91333 0.91296 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 71.24 0.74 0.42 16 2 C -0.05 -0.75 7.39 24.79 0.18 -0.57 16 3 C -0.07 -1.11 11.80 83.39 0.98 -0.13 16 4 N -0.50 -10.53 11.28 -303.82 -3.43 -13.96 16 5 C 0.19 3.53 7.19 88.34 0.64 4.17 16 6 C 0.19 2.48 3.13 44.17 0.14 2.62 16 7 H 0.13 1.20 7.44 -2.39 -0.02 1.18 16 8 C -0.18 -2.27 8.98 71.98 0.65 -1.62 16 9 N -0.66 -9.38 6.12 -467.23 -2.86 -12.24 16 10 C 0.09 1.16 3.25 46.11 0.15 1.31 16 11 H 0.12 1.05 7.44 -2.39 -0.02 1.03 16 12 C -0.11 -1.36 6.77 31.99 0.22 -1.14 16 13 C 0.09 1.48 6.69 86.86 0.58 2.06 16 14 N -0.61 -15.34 3.33 -811.80 -2.70 -18.04 16 15 C 0.55 19.61 7.87 87.66 0.69 20.30 16 16 O -0.57 -25.01 16.19 -3.03 -0.05 -25.06 16 17 C -0.10 -3.95 5.16 71.24 0.37 -3.58 16 18 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 19 C -0.53 -30.97 10.04 67.96 0.68 -30.28 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.82 5.50 84.86 0.47 3.28 16 22 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 23 Si 0.91 45.22 27.74 68.60 1.90 47.12 16 24 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 27 C 0.08 1.56 5.26 86.73 0.46 2.01 16 28 O -0.21 -3.86 10.78 -3.70 -0.04 -3.90 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 35 H 0.08 1.00 6.28 -2.39 -0.01 0.98 16 36 H 0.36 5.78 7.78 -89.69 -0.70 5.08 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.08 1.45 7.48 -2.39 -0.02 1.43 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 3.94 7.85 -2.40 -0.02 3.92 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.07 1.37 7.53 -2.38 -0.02 1.35 16 45 H 0.06 1.30 7.49 -2.39 -0.02 1.28 16 Total: -1.00 -79.66 385.31 -0.71 -80.37 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.27 Total: 12.40 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.94 Total: -1.16 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -8.68 Total: -99.66 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.09 Total: -28.97 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -79.66 -0.71 -80.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181107426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -79.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds