Wall clock time and date at job start Tue Mar 31 2020 22:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 126.77222 * 2 1 4 4 C 1.41378 * 103.98407 * 180.13251 * 3 2 1 5 5 C 1.50704 * 126.80378 * 179.88760 * 4 3 2 6 6 N 1.46893 * 109.47091 * 94.71093 * 5 4 3 7 7 C 1.46902 * 111.00053 * 66.04995 * 6 5 4 8 8 C 1.46904 * 110.99840 * 189.99953 * 6 5 4 9 9 H 1.09002 * 110.88699 * 300.70246 * 8 6 5 10 10 C 1.55156 * 111.00397 * 176.81833 * 8 6 5 11 11 C 1.54428 * 102.89529 * 206.40896 * 10 8 6 12 12 N 1.47023 * 107.28154 * 22.18672 * 11 10 8 13 13 C 1.34772 * 125.64623 * 181.02254 * 12 11 10 14 14 O 1.21286 * 119.99643 * 180.02562 * 13 12 11 15 15 C 1.50694 * 120.00407 * 0.04362 * 13 12 11 16 16 S 1.80999 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99883 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99861 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99984 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47009 * 89.99991 * 21 19 17 23 23 H 1.48497 * 109.47070 * 210.00053 * 21 19 17 24 24 H 1.48502 * 109.47160 * 329.99950 * 21 19 17 25 25 C 1.47430 * 108.69895 * 1.06294 * 12 11 10 26 26 N 1.30176 * 106.39814 * 359.62700 * 4 3 2 27 27 O 1.20928 * 111.60211 * 0.23539 * 26 4 3 28 28 H 1.09007 * 109.46656 * 180.30432 * 1 2 3 29 29 H 1.08995 * 109.47753 * 300.30201 * 1 2 3 30 30 H 1.09001 * 109.46848 * 60.30660 * 1 2 3 31 31 H 1.08000 * 128.01023 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46589 * 334.71123 * 5 4 3 33 33 H 1.09005 * 109.46944 * 214.71822 * 5 4 3 34 34 H 1.08998 * 109.46920 * 183.94908 * 7 6 5 35 35 H 1.08994 * 109.46846 * 303.95113 * 7 6 5 36 36 H 1.08998 * 109.47009 * 63.95154 * 7 6 5 37 37 H 1.09001 * 110.72614 * 324.75382 * 10 8 6 38 38 H 1.09002 * 110.71438 * 88.02479 * 10 8 6 39 39 H 1.08996 * 109.87511 * 262.77039 * 11 10 8 40 40 H 1.08994 * 110.00498 * 141.68055 * 11 10 8 41 41 H 1.08997 * 109.47356 * 300.00085 * 15 13 12 42 42 H 1.09002 * 109.47140 * 59.99747 * 15 13 12 43 43 H 0.97008 * 119.99586 * 180.02562 * 20 19 17 44 44 H 1.09008 * 110.36125 * 217.02920 * 25 12 11 45 45 H 1.09000 * 110.45875 * 94.76152 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 -0.0032 5 6 4.9210 1.3002 -0.0069 6 7 5.4045 1.4505 1.3720 7 6 5.7653 0.1483 1.9483 8 6 6.5360 2.3854 1.4342 9 1 7.3620 2.0375 0.8137 10 6 6.9956 2.6056 2.8997 11 6 7.6300 4.0128 2.8541 12 7 7.0663 4.7085 1.6880 13 6 7.3814 5.9570 1.2903 14 8 6.8511 6.4327 0.3086 15 6 8.3928 6.7619 2.0649 16 16 8.5977 8.3831 1.2865 17 6 9.7988 9.0905 2.3645 18 1 10.1714 8.5229 3.2044 19 6 10.2659 10.3770 2.1342 20 7 11.1635 10.9052 2.9392 21 14 9.6218 11.3584 0.6811 22 1 8.4263 12.1342 1.0986 23 1 10.6761 12.2906 0.2071 24 1 9.2509 10.4306 -0.4175 25 6 6.0986 3.8143 1.0264 26 7 3.4765 -0.7562 0.0034 27 8 2.3096 -1.0736 0.0054 28 1 -0.3633 -1.0277 0.0055 29 1 -0.3634 0.5185 0.8872 30 1 -0.3633 0.5091 -0.8927 31 1 2.0344 2.1271 0.0004 32 1 4.7628 2.2853 -0.4459 33 1 5.6604 0.7553 -0.5939 34 1 6.0531 0.2798 2.9913 35 1 4.9098 -0.5245 1.8895 36 1 6.6006 -0.2764 1.3917 37 1 6.1426 2.5888 3.5781 38 1 7.7343 1.8579 3.1886 39 1 8.7115 3.9285 2.7483 40 1 7.3883 4.5604 3.7650 41 1 8.0457 6.8919 3.0899 42 1 9.3485 6.2377 2.0686 43 1 11.4897 11.8045 2.7784 44 1 6.1512 3.9329 -0.0559 45 1 5.0881 4.0175 1.3809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:19 Heat of formation + Delta-G solvation = 40.440062 kcal Electronic energy + Delta-G solvation = -26341.891358 eV Core-core repulsion = 22489.488056 eV Total energy + Delta-G solvation = -3852.403302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.25521 -40.14788 -38.37962 -36.35188 -34.36113 -33.55260 -32.44429 -31.18918 -30.00977 -28.49091 -28.20886 -27.90131 -25.63127 -24.66510 -23.43444 -22.97047 -20.67863 -20.25608 -19.40009 -18.03237 -17.76201 -17.49453 -16.96371 -16.70947 -15.67532 -15.37824 -15.22590 -15.03495 -14.73701 -14.38424 -14.27282 -13.99793 -13.77772 -13.71627 -13.55762 -13.20412 -12.93870 -12.84176 -12.73349 -12.64406 -12.51724 -12.12599 -11.93685 -11.66310 -11.47754 -11.28620 -11.26369 -11.15633 -11.01029 -10.61331 -10.49380 -9.86506 -9.65872 -9.55458 -9.00738 -8.86034 -8.60415 -8.50568 -6.92731 -6.29309 -4.01199 1.11054 1.82356 2.64416 2.75628 2.92299 3.13541 3.32882 3.49011 3.50567 3.62578 3.86774 4.00649 4.12077 4.32838 4.38043 4.62050 4.69007 4.71179 4.76764 4.78696 4.92467 4.97031 5.01759 5.05408 5.06799 5.09780 5.17114 5.21057 5.27057 5.31357 5.44738 5.47714 5.54955 5.60001 5.64246 5.66933 5.70882 5.77367 5.85731 6.01005 6.26710 6.47213 6.59688 7.54618 7.92762 7.93710 8.40741 8.41399 9.16846 10.79833 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.001965 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.099182 B =14245.464855 C =15044.175721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.217 4.217 4 C 0.031 3.969 5 C 0.128 3.872 6 N -0.525 5.525 7 C 0.022 3.978 8 C 0.068 3.932 9 H 0.063 0.937 10 C -0.121 4.121 11 C 0.102 3.898 12 N -0.624 5.624 13 C 0.548 3.452 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.117 3.883 26 N -0.364 5.364 27 O 0.097 5.903 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 -25.843 -2.410 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.239 4.239 4 C -0.128 4.128 5 C 0.000 4.000 6 N -0.250 5.250 7 C -0.126 4.126 8 C -0.041 4.041 9 H 0.081 0.919 10 C -0.159 4.159 11 C -0.022 4.022 12 N -0.362 5.362 13 C 0.337 3.663 14 O -0.392 6.392 15 C -0.268 4.268 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.006 4.006 26 N -0.069 5.069 27 O 0.030 5.970 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.190 0.810 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.351 -25.722 -3.564 31.798 hybrid contribution 0.908 0.458 0.312 1.064 sum -17.443 -25.265 -3.253 30.873 Atomic orbital electron populations 1.20345 0.83994 1.04616 1.04229 1.24505 0.96392 0.86114 1.02922 1.22411 0.91148 1.01156 1.09208 1.23304 0.97129 0.89761 1.02559 1.20424 0.90039 0.99390 0.90157 1.61924 1.33741 1.11181 1.18151 1.22451 1.00449 0.89685 1.00013 1.22829 0.91531 0.92171 0.97563 0.91924 1.22719 1.01300 0.95896 0.95972 1.22044 0.98533 0.92241 0.89348 1.48365 1.43712 1.14428 1.29652 1.19984 0.82336 0.79452 0.84555 1.90706 1.53106 1.68818 1.26595 1.23249 1.00106 1.00573 1.02850 1.84786 1.56518 1.09470 1.40845 1.22306 1.26130 1.03553 1.14853 0.89376 1.24710 0.93779 0.96486 0.96328 1.69940 1.28615 1.16073 1.37018 0.86736 0.79432 0.81607 0.84086 1.19186 1.19939 1.15927 1.22096 0.93396 0.86846 0.98282 1.73840 0.97051 1.16408 1.19580 1.84814 1.11303 1.33286 1.67547 0.89963 0.89079 0.89129 0.81037 0.87999 0.92642 0.90766 0.90966 0.95222 0.89299 0.89996 0.91033 0.90744 0.88514 0.88528 0.91943 0.90583 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.01 0.38 0.15 16 2 C -0.04 -0.25 7.49 -35.30 -0.26 -0.52 16 3 C -0.22 -1.71 11.06 -39.38 -0.44 -2.15 16 4 C 0.03 0.30 6.07 -82.10 -0.50 -0.20 16 5 C 0.13 1.11 5.45 -4.98 -0.03 1.09 16 6 N -0.52 -4.58 4.65 -233.75 -1.09 -5.67 16 7 C 0.02 0.18 9.16 60.07 0.55 0.73 16 8 C 0.07 0.61 2.71 -65.56 -0.18 0.43 16 9 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 10 C -0.12 -0.96 5.24 -24.84 -0.13 -1.09 16 11 C 0.10 1.04 6.49 -3.01 -0.02 1.02 16 12 N -0.62 -8.61 3.33 -170.46 -0.57 -9.18 16 13 C 0.55 10.11 7.87 -10.99 -0.09 10.02 16 14 O -0.52 -11.41 16.12 5.55 0.09 -11.32 16 15 C -0.12 -2.31 5.35 36.00 0.19 -2.12 16 16 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 21 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C 0.12 1.35 5.47 -2.53 -0.01 1.33 16 26 N -0.36 -3.84 10.98 33.42 0.37 -3.47 16 27 O 0.10 0.91 11.20 17.18 0.19 1.10 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.10 0.82 6.80 -51.93 -0.35 0.47 16 33 H 0.06 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.07 0.52 7.11 -51.93 -0.37 0.15 16 35 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 42 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.93 7.69 -51.92 -0.40 0.53 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -35.12 383.93 -8.42 -43.53 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.94 Total: -3.19 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.32 Total: -3.30 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.51 Total: -44.06 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.28 Total: -10.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.12 -8.42 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.971 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds