Wall clock time and date at job start Tue Mar 31 2020 22:07:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35452 * 126.77309 * 2 1
4 4 C 1.41375 * 103.98499 * 180.02562 * 3 2 1
5 5 C 1.50704 * 126.80368 * 179.97438 * 4 3 2
6 6 N 1.46905 * 109.46714 * 95.00536 * 5 4 3
7 7 C 1.46899 * 111.00264 * 66.04789 * 6 5 4
8 8 C 1.46908 * 110.99823 * 190.00323 * 6 5 4
9 9 H 1.08995 * 110.88022 * 299.23199 * 8 6 5
10 10 C 1.55154 * 111.00516 * 63.10894 * 8 6 5
11 11 C 1.54324 * 102.93901 * 153.61138 * 10 8 6
12 12 N 1.47018 * 107.27655 * 337.81361 * 11 10 8
13 13 C 1.34774 * 125.65084 * 178.90214 * 12 11 10
14 14 O 1.21281 * 119.99496 * 180.02562 * 13 12 11
15 15 C 1.50694 * 120.00062 * 0.02562 * 13 12 11
16 16 S 1.81001 * 109.47140 * 179.97438 * 15 13 12
17 17 C 1.76200 * 99.99742 * 180.02562 * 16 15 13
18 18 H 1.07997 * 120.00612 * 0.02562 * 17 16 15
19 19 C 1.38802 * 119.99828 * 179.72660 * 17 16 15
20 20 N 1.31633 * 119.99908 * 359.97438 * 19 17 16
21 21 Si 1.86801 * 120.00129 * 179.97438 * 19 17 16
22 22 H 1.48496 * 109.46770 * 60.00262 * 21 19 17
23 23 H 1.48499 * 109.47172 * 179.97438 * 21 19 17
24 24 H 1.48496 * 109.47224 * 300.00223 * 21 19 17
25 25 C 1.47429 * 108.69901 * 359.16117 * 12 11 10
26 26 N 1.30171 * 106.39742 * 0.26634 * 4 3 2
27 27 O 1.20924 * 111.60346 * 359.52962 * 26 4 3
28 28 H 1.09008 * 109.47144 * 90.00445 * 1 2 3
29 29 H 1.08996 * 109.47207 * 209.99712 * 1 2 3
30 30 H 1.08997 * 109.47480 * 330.00103 * 1 2 3
31 31 H 1.08000 * 128.00899 * 359.97438 * 3 2 1
32 32 H 1.08997 * 109.47109 * 335.00567 * 5 4 3
33 33 H 1.08992 * 109.47420 * 215.00692 * 5 4 3
34 34 H 1.08996 * 109.47047 * 178.64999 * 7 6 5
35 35 H 1.09007 * 109.46808 * 298.65298 * 7 6 5
36 36 H 1.09000 * 109.46808 * 58.64537 * 7 6 5
37 37 H 1.09010 * 110.71896 * 35.25349 * 10 8 6
38 38 H 1.08998 * 110.72161 * 271.98227 * 10 8 6
39 39 H 1.08999 * 109.88265 * 218.39092 * 11 10 8
40 40 H 1.09006 * 110.00564 * 97.30212 * 11 10 8
41 41 H 1.09003 * 109.46820 * 59.99978 * 15 13 12
42 42 H 1.08996 * 109.47115 * 300.00428 * 15 13 12
43 43 H 0.97003 * 120.00263 * 180.02562 * 20 19 17
44 44 H 1.09000 * 110.36404 * 142.74401 * 25 12 11
45 45 H 1.09002 * 110.37135 * 265.06387 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3179 1.0850 0.0000
4 6 3.6212 0.5374 -0.0006
5 6 4.9210 1.3002 -0.0014
6 7 5.4051 1.4440 1.3781
7 6 5.7661 0.1391 1.9481
8 6 6.5367 2.3786 1.4442
9 1 7.3718 2.0206 0.8422
10 6 6.1069 3.8040 1.0073
11 6 7.1083 4.7107 1.7535
12 7 7.6232 3.9439 2.8973
13 6 8.5387 4.3781 3.7859
14 8 8.8919 3.6563 4.6943
15 6 9.1234 5.7604 3.6508
16 16 10.3132 6.0453 4.9848
17 6 10.8246 7.6854 4.5935
18 1 10.4047 8.1923 3.7373
19 6 11.7626 8.3283 5.3893
20 7 12.2698 7.7129 6.4366
21 14 12.3054 10.0668 4.9741
22 1 11.1291 10.9727 5.0031
23 1 13.3065 10.5243 5.9710
24 1 12.9115 10.0858 3.6186
25 6 6.9768 2.6189 2.9075
26 7 3.4764 -0.7562 -0.0067
27 8 2.3095 -1.0736 -0.0006
28 1 -0.3634 -0.0001 -1.0277
29 1 -0.3633 -0.8900 0.5138
30 1 -0.3634 0.8899 0.5138
31 1 2.0344 2.1271 -0.0004
32 1 4.7627 2.2873 -0.4357
33 1 5.6601 0.7582 -0.5912
34 1 6.1437 0.2771 2.9612
35 1 4.8854 -0.5027 1.9728
36 1 6.5369 -0.3253 1.3330
37 1 5.0856 4.0135 1.3258
38 1 6.2078 3.9236 -0.0714
39 1 6.6026 5.6092 2.1070
40 1 7.9293 4.9841 1.0907
41 1 8.3252 6.5001 3.7123
42 1 9.6277 5.8491 2.6886
43 1 12.9251 8.1623 6.9930
44 1 7.6863 1.8532 3.2213
45 1 6.1084 2.6254 3.5662
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188958964.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:20
Heat of formation + Delta-G solvation = 15.243002 kcal
Electronic energy + Delta-G solvation = -26207.479208 eV
Core-core repulsion = 22353.983279 eV
Total energy + Delta-G solvation = -3853.495928 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.86585 -41.21433 -39.44495 -37.29887 -34.97023 -34.58593 -34.09187 -32.33968
-31.02354 -29.54493 -28.78282 -28.31766 -27.66625 -25.79523 -23.95998 -23.69914
-21.52667 -20.88987 -20.60562 -19.59975 -18.65638 -18.18533 -18.04680 -17.78755
-16.88248 -16.73930 -16.36514 -16.05866 -15.87474 -15.58304 -15.26923 -14.94854
-14.57878 -14.48974 -14.28757 -14.02399 -13.91167 -13.81107 -13.62314 -13.41289
-13.17054 -13.15961 -13.08010 -13.00530 -12.86042 -12.62769 -12.33101 -12.05265
-11.99721 -11.81035 -11.74692 -11.13681 -11.12640 -11.02051 -10.29197 -10.18940
-9.74928 -9.54243 -8.68892 -8.34352 -6.13649 0.56087 1.18779 1.27205
1.44621 1.44860 1.52923 1.55152 2.02028 2.27406 2.29403 2.84112
2.99694 3.16504 3.27846 3.37531 3.54383 3.61320 3.86344 4.00830
4.09517 4.17344 4.21369 4.28922 4.31756 4.34655 4.43031 4.44145
4.45246 4.58317 4.61552 4.74708 4.77126 4.77334 4.83179 4.89569
4.95008 4.96425 5.09318 5.17054 5.28205 5.31317 5.41419 5.77583
5.88553 6.19570 6.35075 7.06293 7.07286 7.35200 8.74703
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.033586 B = 0.001769 C = 0.001724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 833.488159 B =15827.988061 C =16233.318252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.034 4.034
3 C -0.226 4.226
4 C 0.019 3.981
5 C 0.134 3.866
6 N -0.525 5.525
7 C 0.024 3.976
8 C 0.079 3.921
9 H 0.064 0.936
10 C -0.109 4.109
11 C 0.091 3.909
12 N -0.617 5.617
13 C 0.546 3.454
14 O -0.569 6.569
15 C -0.118 4.118
16 S -0.154 6.154
17 C -0.546 4.546
18 H 0.085 0.915
19 C 0.013 3.987
20 N -0.912 5.912
21 Si 1.000 3.000
22 H -0.261 1.261
23 H -0.279 1.279
24 H -0.261 1.261
25 C 0.116 3.884
26 N -0.397 5.397
27 O 0.079 5.921
28 H 0.103 0.897
29 H 0.088 0.912
30 H 0.109 0.891
31 H 0.195 0.805
32 H 0.128 0.872
33 H 0.050 0.950
34 H 0.068 0.932
35 H 0.062 0.938
36 H 0.029 0.971
37 H 0.100 0.900
38 H 0.115 0.885
39 H 0.084 0.916
40 H 0.083 0.917
41 H 0.109 0.891
42 H 0.109 0.891
43 H 0.271 0.729
44 H 0.056 0.944
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.153 -11.306 -20.757 35.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.097 4.097
3 C -0.248 4.248
4 C -0.140 4.140
5 C 0.006 3.994
6 N -0.250 5.250
7 C -0.124 4.124
8 C -0.030 4.030
9 H 0.082 0.918
10 C -0.147 4.147
11 C -0.031 4.031
12 N -0.352 5.352
13 C 0.334 3.666
14 O -0.448 6.448
15 C -0.269 4.269
16 S 0.073 5.927
17 C -0.694 4.694
18 H 0.103 0.897
19 C -0.192 4.192
20 N -0.548 5.548
21 Si 0.821 3.179
22 H -0.185 1.185
23 H -0.205 1.205
24 H -0.186 1.186
25 C -0.007 4.007
26 N -0.104 5.104
27 O 0.014 5.986
28 H 0.122 0.878
29 H 0.107 0.893
30 H 0.127 0.873
31 H 0.212 0.788
32 H 0.146 0.854
33 H 0.069 0.931
34 H 0.087 0.913
35 H 0.080 0.920
36 H 0.048 0.952
37 H 0.118 0.882
38 H 0.133 0.867
39 H 0.102 0.898
40 H 0.101 0.899
41 H 0.127 0.873
42 H 0.127 0.873
43 H 0.080 0.920
44 H 0.075 0.925
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -25.009 -13.185 -18.965 34.044
hybrid contribution 0.733 1.674 -0.991 2.078
sum -24.277 -11.512 -19.955 33.468
Atomic orbital electron populations
1.20551 0.81267 1.05862 1.05396 1.25261 0.97891 0.85416 1.01159
1.22726 0.90250 1.02254 1.09552 1.23647 0.98317 0.89690 1.02335
1.20472 0.89441 1.00405 0.89093 1.61914 1.33352 1.10535 1.19233
1.22391 1.00099 0.90051 0.99866 1.22633 0.91930 0.94014 0.94400
0.91765 1.22756 0.99775 0.90287 1.01839 1.22395 0.98120 0.95850
0.86712 1.48349 1.40965 1.16971 1.28888 1.19828 0.78062 0.88001
0.80677 1.90690 1.61462 1.58227 1.34429 1.23286 1.02727 0.96320
1.04545 1.85631 1.50236 1.20397 1.36405 1.23165 1.29419 1.00017
1.16804 0.89729 1.26157 0.95128 1.03830 0.94051 1.70187 1.28611
1.39728 1.16284 0.84983 0.78271 0.76186 0.78429 1.18543 1.20453
1.18561 1.22104 0.96708 0.84174 0.97722 1.73858 0.97838 1.17605
1.21128 1.84772 1.11360 1.34456 1.67966 0.87832 0.89269 0.87272
0.78751 0.85419 0.93143 0.91324 0.91969 0.95202 0.88179 0.86672
0.89773 0.89898 0.87312 0.87300 0.91990 0.92530 0.90940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.20 10.45 71.24 0.74 0.54 16
2 C -0.03 -0.39 7.49 25.04 0.19 -0.20 16
3 C -0.23 -2.67 11.06 22.40 0.25 -2.42 16
4 C 0.02 0.31 6.05 43.58 0.26 0.57 16
5 C 0.13 1.79 5.44 85.56 0.47 2.25 16
6 N -0.53 -8.65 4.66 -893.87 -4.16 -12.81 16
7 C 0.02 0.47 9.17 127.69 1.17 1.64 16
8 C 0.08 1.31 2.70 46.23 0.12 1.43 16
9 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
10 C -0.11 -1.23 5.40 31.78 0.17 -1.06 16
11 C 0.09 1.61 6.49 86.73 0.56 2.17 16
12 N -0.62 -17.41 3.33 -812.24 -2.70 -20.11 16
13 C 0.55 21.61 7.87 87.66 0.69 22.30 16
14 O -0.57 -28.15 16.12 -3.03 -0.05 -28.20 16
15 C -0.12 -4.81 5.35 71.23 0.38 -4.43 16
16 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16
17 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16
18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16
19 C 0.01 0.75 5.49 84.86 0.47 1.21 16
20 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16
21 Si 1.00 43.44 29.55 68.60 2.03 45.47 16
22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16
23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16
24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16
25 C 0.12 2.87 5.27 86.78 0.46 3.33 16
26 N -0.40 -8.24 11.14 -49.56 -0.55 -8.79 16
27 O 0.08 1.43 11.20 71.66 0.80 2.23 16
28 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16
29 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16
30 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16
31 H 0.20 1.17 8.06 -2.91 -0.02 1.14 16
32 H 0.13 0.98 6.80 -2.39 -0.02 0.96 16
33 H 0.05 0.72 8.11 -2.39 -0.02 0.71 16
34 H 0.07 1.39 6.86 -2.39 -0.02 1.38 16
35 H 0.06 1.33 6.64 -2.38 -0.02 1.31 16
36 H 0.03 0.57 8.13 -2.39 -0.02 0.55 16
37 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16
38 H 0.11 0.64 7.88 -2.39 -0.02 0.62 16
39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16
41 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16
42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16
43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16
44 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16
45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
Total: -1.00 -82.62 386.64 2.05 -80.56
By element:
Atomic # 1 Polarization: 9.94 SS G_CDS: 0.98 Total: 10.92 kcal
Atomic # 6 Polarization: -9.90 SS G_CDS: 6.58 Total: -3.32 kcal
Atomic # 7 Polarization: -90.67 SS G_CDS: -7.13 Total: -97.80 kcal
Atomic # 8 Polarization: -26.72 SS G_CDS: 0.75 Total: -25.97 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal
Total: -82.62 2.05 -80.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188958964.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.808 kcal
(2) G-P(sol) polarization free energy of solvation -82.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds