Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30172 * 126.80857 * 2 1 4 4 O 1.20914 * 111.60607 * 180.24893 * 3 2 1 5 5 C 1.34041 * 111.57053 * 359.74366 * 4 3 2 6 6 C 1.35457 * 106.44224 * 359.97438 * 5 4 3 7 7 C 1.50698 * 128.00355 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47252 * 260.02508 * 7 6 5 9 9 C 1.46898 * 111.00027 * 66.04805 * 8 7 6 10 10 C 1.46903 * 111.00120 * 190.00370 * 8 7 6 11 11 H 1.08999 * 110.88678 * 301.01672 * 10 8 7 12 12 C 1.55155 * 111.03890 * 64.91692 * 10 8 7 13 13 C 1.54332 * 103.02108 * 153.39663 * 12 10 8 14 14 N 1.47027 * 107.26499 * 338.14286 * 13 12 10 15 15 C 1.34773 * 125.64709 * 178.85079 * 14 13 12 16 16 O 1.21282 * 120.00025 * 179.69665 * 15 14 13 17 17 C 1.50698 * 120.00172 * 359.68681 * 15 14 13 18 18 S 1.81000 * 109.47100 * 180.02562 * 17 15 14 19 19 C 1.76207 * 99.99755 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99867 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99730 * 179.72601 * 19 18 17 22 22 N 1.31631 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99925 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47300 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47322 * 119.99888 * 23 21 19 26 26 H 1.48502 * 109.47198 * 239.99858 * 23 21 19 27 27 C 1.47428 * 108.70304 * 358.58464 * 14 13 12 28 28 H 1.08998 * 109.47227 * 270.17354 * 1 2 3 29 29 H 1.09008 * 109.46915 * 30.17351 * 1 2 3 30 30 H 1.08996 * 109.47052 * 150.16729 * 1 2 3 31 31 H 1.08001 * 126.78030 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.46807 * 140.02701 * 7 6 5 33 33 H 1.09005 * 109.47180 * 20.02951 * 7 6 5 34 34 H 1.09001 * 109.47196 * 185.78110 * 9 8 7 35 35 H 1.09000 * 109.46756 * 305.78663 * 9 8 7 36 36 H 1.09000 * 109.46831 * 65.78059 * 9 8 7 37 37 H 1.09001 * 110.72391 * 271.95716 * 12 10 8 38 38 H 1.09010 * 110.71798 * 35.05259 * 12 10 8 39 39 H 1.09002 * 109.99215 * 218.66970 * 13 12 10 40 40 H 1.08991 * 109.77944 * 97.49709 * 13 12 10 41 41 H 1.09003 * 109.47016 * 60.00468 * 17 15 14 42 42 H 1.08997 * 109.47534 * 300.00910 * 17 15 14 43 43 H 0.96998 * 119.99998 * 180.02562 * 22 21 19 44 44 H 1.08992 * 110.36501 * 143.19173 * 27 14 13 45 45 H 1.08994 * 110.36587 * 265.40726 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0033 6 6 2.3538 -1.1321 0.0040 7 6 1.9589 -2.5864 0.0080 8 7 1.5919 -2.9980 -1.3535 9 6 2.7560 -2.9545 -2.2485 10 6 0.9780 -4.3326 -1.3527 11 1 1.6593 -5.0734 -0.9341 12 6 -0.3722 -4.3242 -0.5883 13 6 -1.1496 -5.4857 -1.2429 14 7 -0.5550 -5.7169 -2.5675 15 6 -0.9385 -6.6642 -3.4461 16 8 -0.3776 -6.7607 -4.5171 17 6 -2.0641 -7.6037 -3.0977 18 16 -2.3390 -8.7511 -4.4702 19 6 -3.6675 -9.7031 -3.8117 20 1 -4.0549 -9.4816 -2.8283 21 6 -4.2201 -10.7337 -4.5595 22 7 -3.7521 -10.9995 -5.7607 23 14 -5.6280 -11.7433 -3.8612 24 1 -5.9663 -11.2479 -2.5027 25 1 -6.8147 -11.6157 -4.7448 26 1 -5.2220 -13.1695 -3.7806 27 6 0.5260 -4.7368 -2.7781 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8885 -0.5166 30 1 -0.3633 -0.8915 -0.5112 31 1 4.5338 -1.1537 -0.0063 32 1 1.1071 -2.7297 0.6730 33 1 2.7973 -3.1897 0.3564 34 1 2.4373 -3.1639 -3.2696 35 1 3.2106 -1.9648 -2.2053 36 1 3.4838 -3.7027 -1.9343 37 1 -0.2153 -4.5124 0.4738 38 1 -0.8943 -3.3791 -0.7381 39 1 -2.2005 -5.2170 -1.3501 40 1 -1.0547 -6.3834 -0.6322 41 1 -2.9729 -7.0301 -2.9156 42 1 -1.8037 -8.1661 -2.2010 43 1 -4.1386 -11.7194 -6.2834 44 1 1.3520 -5.1942 -3.3226 45 1 0.1505 -3.8684 -3.3193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = 38.691431 kcal Electronic energy + Delta-G solvation = -26540.789586 eV Core-core repulsion = 22688.310458 eV Total energy + Delta-G solvation = -3852.479128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.28835 -40.10130 -38.36336 -36.42256 -34.83711 -32.51355 -32.44020 -31.10460 -29.87459 -29.04141 -28.23678 -27.73513 -25.53468 -24.81269 -22.90089 -21.76091 -21.67778 -20.51154 -19.34815 -17.97404 -17.78075 -17.71716 -16.96341 -16.62683 -15.64631 -15.49389 -15.15704 -14.82159 -14.75242 -14.49174 -14.22224 -13.87419 -13.80116 -13.63058 -13.27334 -13.05459 -12.99937 -12.78887 -12.63867 -12.54470 -12.41634 -12.18385 -11.82531 -11.52849 -11.42300 -11.25797 -11.16287 -11.08067 -11.02538 -10.77071 -10.19306 -9.88784 -9.81764 -9.44331 -9.08570 -8.84350 -8.53140 -8.24299 -6.51597 -6.22949 -3.93615 1.09236 1.81188 2.80889 2.88982 3.03815 3.20519 3.23671 3.29684 3.47634 3.67595 3.86156 4.08380 4.16330 4.19335 4.34217 4.42082 4.65195 4.73544 4.84537 5.00435 5.01242 5.07543 5.08843 5.12141 5.12408 5.16307 5.19059 5.29175 5.41463 5.43414 5.48002 5.52022 5.58981 5.60550 5.69165 5.74267 5.78456 5.83460 5.92753 6.12364 6.34260 6.50502 6.62156 7.58564 7.63668 7.92703 8.34255 8.53026 9.22421 10.84546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.001883 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.031469 B =14869.242728 C =15328.313500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.370 5.370 4 O 0.096 5.904 5 C -0.057 4.057 6 C -0.190 4.190 7 C 0.130 3.870 8 N -0.526 5.526 9 C 0.018 3.982 10 C 0.069 3.931 11 H 0.062 0.938 12 C -0.123 4.123 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.213 0.787 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 20.324 16.467 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 N -0.077 5.077 4 O 0.032 5.968 5 C -0.140 4.140 6 C -0.194 4.194 7 C 0.003 3.997 8 N -0.250 5.250 9 C -0.130 4.130 10 C -0.040 4.040 11 H 0.080 0.920 12 C -0.162 4.162 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.004 4.004 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.349 21.642 14.467 29.256 hybrid contribution -0.889 -1.968 2.009 2.950 sum 12.460 19.674 16.476 28.527 Atomic orbital electron populations 1.20203 0.85816 1.04375 1.03120 1.23504 0.99127 0.88019 1.01495 1.73870 0.89410 1.24294 1.20093 1.84831 1.21690 1.22824 1.67416 1.25826 1.00656 0.83929 1.03544 1.21094 0.92097 0.97265 1.08958 1.20272 1.00560 0.88229 0.90679 1.61944 1.29275 1.25472 1.08345 1.22471 0.91449 1.01362 0.97672 1.22814 0.95601 0.88996 0.96623 0.92047 1.22725 0.94889 0.99301 0.99240 1.21980 0.97917 0.98176 0.83938 1.48423 1.36348 1.33856 1.17795 1.20031 0.83899 0.79344 0.82941 1.90712 1.55339 1.70313 1.22552 1.23499 0.98275 1.00948 1.06929 1.85415 1.45556 1.34497 1.18025 1.22896 1.20218 1.19718 1.05401 0.90864 1.25001 0.97385 0.96570 0.94690 1.70028 1.40685 1.29726 1.09810 0.86111 0.80886 0.79495 0.78962 1.19609 1.20555 1.20571 1.22054 0.90756 0.92333 0.95300 0.90427 0.90687 0.89145 0.77052 0.88928 0.93209 0.90569 0.91321 0.95151 0.90157 0.89371 0.90942 0.91226 0.89250 0.89304 0.92226 0.90612 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 36.01 0.37 -0.13 16 2 C 0.04 0.32 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -3.77 12.07 33.42 0.40 -3.37 16 4 O 0.10 0.82 11.20 17.18 0.19 1.01 16 5 C -0.06 -0.33 11.49 29.74 0.34 0.01 16 6 C -0.19 -1.29 4.90 -104.42 -0.51 -1.80 16 7 C 0.13 0.74 5.35 -4.98 -0.03 0.71 16 8 N -0.53 -3.73 4.65 -233.74 -1.09 -4.82 16 9 C 0.02 0.13 9.15 60.06 0.55 0.68 16 10 C 0.07 0.55 2.71 -65.56 -0.18 0.37 16 11 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 12 C -0.12 -0.86 5.48 -24.89 -0.14 -1.00 16 13 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 14 N -0.63 -8.77 3.33 -170.52 -0.57 -9.34 16 15 C 0.55 10.52 7.87 -10.99 -0.09 10.43 16 16 O -0.52 -11.93 16.12 5.56 0.09 -11.84 16 17 C -0.15 -2.97 5.35 36.00 0.19 -2.77 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.15 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.12 1.38 5.21 -2.53 -0.01 1.37 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.21 0.41 8.06 -52.49 -0.42 -0.02 16 32 H 0.09 0.46 6.88 -51.93 -0.36 0.11 16 33 H 0.05 0.24 8.12 -51.93 -0.42 -0.18 16 34 H 0.08 0.60 7.15 -51.93 -0.37 0.22 16 35 H 0.07 0.45 6.52 -51.93 -0.34 0.11 16 36 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.41 7.89 -51.93 -0.41 0.00 16 38 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -35.74 386.98 -8.49 -44.23 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.93 Total: -4.46 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.27 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.52 Total: -42.88 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.28 Total: -10.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.74 -8.49 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.922 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds