Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30172 * 126.80857 * 2 1 4 4 O 1.20914 * 111.60607 * 180.24893 * 3 2 1 5 5 C 1.34041 * 111.57053 * 359.74366 * 4 3 2 6 6 C 1.35457 * 106.44224 * 359.97438 * 5 4 3 7 7 C 1.50698 * 128.00355 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47252 * 260.02508 * 7 6 5 9 9 C 1.46898 * 111.00027 * 66.04805 * 8 7 6 10 10 C 1.46903 * 111.00120 * 190.00370 * 8 7 6 11 11 H 1.08999 * 110.88678 * 301.01672 * 10 8 7 12 12 C 1.55155 * 111.03890 * 64.91692 * 10 8 7 13 13 C 1.54332 * 103.02108 * 153.39663 * 12 10 8 14 14 N 1.47027 * 107.26499 * 338.14286 * 13 12 10 15 15 C 1.34773 * 125.64709 * 178.85079 * 14 13 12 16 16 O 1.21282 * 120.00025 * 179.69665 * 15 14 13 17 17 C 1.50698 * 120.00172 * 359.68681 * 15 14 13 18 18 S 1.81000 * 109.47100 * 180.02562 * 17 15 14 19 19 C 1.76207 * 99.99755 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99867 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99730 * 179.72601 * 19 18 17 22 22 N 1.31631 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99925 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47300 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47322 * 119.99888 * 23 21 19 26 26 H 1.48502 * 109.47198 * 239.99858 * 23 21 19 27 27 C 1.47428 * 108.70304 * 358.58464 * 14 13 12 28 28 H 1.08998 * 109.47227 * 270.17354 * 1 2 3 29 29 H 1.09008 * 109.46915 * 30.17351 * 1 2 3 30 30 H 1.08996 * 109.47052 * 150.16729 * 1 2 3 31 31 H 1.08001 * 126.78030 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.46807 * 140.02701 * 7 6 5 33 33 H 1.09005 * 109.47180 * 20.02951 * 7 6 5 34 34 H 1.09001 * 109.47196 * 185.78110 * 9 8 7 35 35 H 1.09000 * 109.46756 * 305.78663 * 9 8 7 36 36 H 1.09000 * 109.46831 * 65.78059 * 9 8 7 37 37 H 1.09001 * 110.72391 * 271.95716 * 12 10 8 38 38 H 1.09010 * 110.71798 * 35.05259 * 12 10 8 39 39 H 1.09002 * 109.99215 * 218.66970 * 13 12 10 40 40 H 1.08991 * 109.77944 * 97.49709 * 13 12 10 41 41 H 1.09003 * 109.47016 * 60.00468 * 17 15 14 42 42 H 1.08997 * 109.47534 * 300.00910 * 17 15 14 43 43 H 0.96998 * 119.99998 * 180.02562 * 22 21 19 44 44 H 1.08992 * 110.36501 * 143.19173 * 27 14 13 45 45 H 1.08994 * 110.36587 * 265.40726 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0033 6 6 2.3538 -1.1321 0.0040 7 6 1.9589 -2.5864 0.0080 8 7 1.5919 -2.9980 -1.3535 9 6 2.7560 -2.9545 -2.2485 10 6 0.9780 -4.3326 -1.3527 11 1 1.6593 -5.0734 -0.9341 12 6 -0.3722 -4.3242 -0.5883 13 6 -1.1496 -5.4857 -1.2429 14 7 -0.5550 -5.7169 -2.5675 15 6 -0.9385 -6.6642 -3.4461 16 8 -0.3776 -6.7607 -4.5171 17 6 -2.0641 -7.6037 -3.0977 18 16 -2.3390 -8.7511 -4.4702 19 6 -3.6675 -9.7031 -3.8117 20 1 -4.0549 -9.4816 -2.8283 21 6 -4.2201 -10.7337 -4.5595 22 7 -3.7521 -10.9995 -5.7607 23 14 -5.6280 -11.7433 -3.8612 24 1 -5.9663 -11.2479 -2.5027 25 1 -6.8147 -11.6157 -4.7448 26 1 -5.2220 -13.1695 -3.7806 27 6 0.5260 -4.7368 -2.7781 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8885 -0.5166 30 1 -0.3633 -0.8915 -0.5112 31 1 4.5338 -1.1537 -0.0063 32 1 1.1071 -2.7297 0.6730 33 1 2.7973 -3.1897 0.3564 34 1 2.4373 -3.1639 -3.2696 35 1 3.2106 -1.9648 -2.2053 36 1 3.4838 -3.7027 -1.9343 37 1 -0.2153 -4.5124 0.4738 38 1 -0.8943 -3.3791 -0.7381 39 1 -2.2005 -5.2170 -1.3501 40 1 -1.0547 -6.3834 -0.6322 41 1 -2.9729 -7.0301 -2.9156 42 1 -1.8037 -8.1661 -2.2010 43 1 -4.1386 -11.7194 -6.2834 44 1 1.3520 -5.1942 -3.3226 45 1 0.1505 -3.8684 -3.3193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = 13.807448 kcal Electronic energy + Delta-G solvation = -26541.868637 eV Core-core repulsion = 22688.310458 eV Total energy + Delta-G solvation = -3853.558179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.85418 -41.16215 -39.38801 -37.32712 -35.46202 -34.58728 -33.17107 -32.11219 -30.95960 -29.63809 -29.15040 -28.38113 -27.66315 -25.60183 -23.77767 -22.35753 -22.17361 -21.16343 -20.68098 -19.58493 -18.55810 -18.29639 -18.09393 -17.73532 -16.88700 -16.68574 -16.35693 -16.08672 -15.73310 -15.56109 -15.18972 -14.99530 -14.58347 -14.41320 -14.12664 -14.06318 -13.86945 -13.74458 -13.55672 -13.36621 -13.26649 -13.14783 -13.06307 -12.91271 -12.71301 -12.58156 -12.18108 -11.98085 -11.94424 -11.76835 -11.70663 -11.15910 -10.99504 -10.74840 -10.39606 -10.27909 -9.71375 -9.35545 -8.68331 -8.34864 -6.13524 0.61138 1.21510 1.28219 1.41944 1.45399 1.55158 1.57319 2.05175 2.27069 2.45656 2.96697 2.99424 3.20774 3.35217 3.42406 3.66903 3.68864 3.87834 3.95223 4.07898 4.18775 4.23403 4.31083 4.37292 4.45088 4.47255 4.52305 4.63665 4.67386 4.69454 4.74374 4.80999 4.82800 4.89083 4.94522 4.99848 5.04162 5.07664 5.21534 5.32299 5.35582 5.42106 5.98641 6.02977 6.20061 6.37855 7.06363 7.09924 7.40357 8.74686 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.001883 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.031469 B =14869.242728 C =15328.313500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 N -0.409 5.409 4 O 0.081 5.919 5 C -0.044 4.044 6 C -0.199 4.199 7 C 0.134 3.866 8 N -0.532 5.532 9 C 0.020 3.980 10 C 0.083 3.917 11 H 0.068 0.932 12 C -0.110 4.110 13 C 0.091 3.909 14 N -0.617 5.617 15 C 0.546 3.454 16 O -0.569 6.569 17 C -0.118 4.118 18 S -0.154 6.154 19 C -0.543 4.543 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.115 3.885 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.767 20.529 19.864 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.133 4.133 3 N -0.118 5.118 4 O 0.020 5.980 5 C -0.126 4.126 6 C -0.204 4.204 7 C 0.007 3.993 8 N -0.256 5.256 9 C -0.128 4.128 10 C -0.026 4.026 11 H 0.086 0.914 12 C -0.148 4.148 13 C -0.031 4.031 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.448 6.448 17 C -0.269 4.269 18 S 0.073 5.927 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.178 1.178 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.266 0.734 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.018 21.896 17.927 31.149 hybrid contribution -0.680 -1.905 0.998 2.255 sum 12.338 19.991 18.925 30.167 Atomic orbital electron populations 1.20254 0.84908 1.04256 1.03953 1.23947 1.00027 0.88457 1.00893 1.73871 0.90168 1.25645 1.22119 1.84784 1.21225 1.24300 1.67725 1.26546 1.01933 0.82920 1.01242 1.21247 0.92074 0.97455 1.09586 1.20328 1.01790 0.87503 0.89662 1.61898 1.29575 1.24684 1.09490 1.22436 0.91646 1.01838 0.96925 1.22641 0.96500 0.89688 0.93778 0.91375 1.22739 0.93326 0.98275 1.00477 1.22384 0.98697 1.00168 0.81866 1.48353 1.36285 1.32195 1.18334 1.19793 0.83528 0.80234 0.83035 1.90689 1.57027 1.72106 1.24955 1.23286 0.99770 0.99805 1.04043 1.85621 1.46360 1.37391 1.23307 1.23222 1.20139 1.19937 1.05820 0.89782 1.26158 1.00390 0.97832 0.94912 1.70195 1.42509 1.30603 1.11524 0.84883 0.76727 0.77436 0.78760 1.17843 1.19995 1.19940 1.22185 0.89459 0.91167 0.97977 0.89068 0.91493 0.88510 0.73449 0.87666 0.91504 0.92216 0.90954 0.94203 0.86895 0.88604 0.90194 0.90009 0.87509 0.87343 0.91998 0.92419 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.39 71.24 0.74 -0.14 16 2 C 0.03 0.40 7.33 43.58 0.32 0.72 16 3 N -0.41 -8.11 12.07 -49.57 -0.60 -8.70 16 4 O 0.08 1.30 11.20 71.64 0.80 2.10 16 5 C -0.04 -0.40 11.49 67.18 0.77 0.37 16 6 C -0.20 -2.19 4.90 -19.73 -0.10 -2.29 16 7 C 0.13 1.02 5.35 85.56 0.46 1.48 16 8 N -0.53 -6.08 4.65 -893.43 -4.16 -10.24 16 9 C 0.02 0.24 9.15 127.69 1.17 1.40 16 10 C 0.08 1.09 2.71 46.31 0.13 1.22 16 11 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 12 C -0.11 -1.08 5.48 31.79 0.17 -0.90 16 13 C 0.09 1.52 6.49 86.73 0.56 2.08 16 14 N -0.62 -16.53 3.33 -811.80 -2.70 -19.23 16 15 C 0.55 21.01 7.87 87.66 0.69 21.70 16 16 O -0.57 -27.44 16.12 -3.04 -0.05 -27.49 16 17 C -0.12 -4.75 5.35 71.24 0.38 -4.36 16 18 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 19 C -0.54 -30.93 9.50 67.96 0.65 -30.28 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.32 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.12 2.58 5.21 86.85 0.45 3.03 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.25 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.11 0.56 6.88 -2.38 -0.02 0.55 16 33 H 0.07 0.33 8.12 -2.38 -0.02 0.31 16 34 H 0.06 0.91 7.15 -2.39 -0.02 0.90 16 35 H 0.07 0.82 6.52 -2.39 -0.02 0.80 16 36 H 0.04 0.40 8.14 -2.39 -0.02 0.39 16 37 H 0.11 0.49 7.89 -2.39 -0.02 0.47 16 38 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -82.06 386.98 2.29 -79.77 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.98 Total: 8.85 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 6.86 Total: -4.84 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -7.17 Total: -93.93 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.75 Total: -25.39 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -82.06 2.29 -79.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.581 kcal (2) G-P(sol) polarization free energy of solvation -82.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds