Wall clock time and date at job start Tue Mar 31 2020 22:47:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.34484 * 126.16351 * 2 1
4 4 C 1.30255 * 108.70214 * 180.27328 * 3 2 1
5 5 O 1.33970 * 108.76080 * 359.75239 * 4 3 2
6 6 C 1.34323 * 126.16956 * 179.85271 * 2 1 3
7 7 C 1.50697 * 126.44470 * 0.02562 * 6 2 1
8 8 N 1.46903 * 109.47382 * 89.70756 * 7 6 2
9 9 C 1.46900 * 110.99855 * 66.05019 * 8 7 6
10 10 C 1.46907 * 110.99812 * 190.00318 * 8 7 6
11 11 H 1.08995 * 110.88539 * 298.90979 * 10 8 7
12 12 C 1.55158 * 111.00247 * 62.79268 * 10 8 7
13 13 C 1.54378 * 102.91886 * 153.54526 * 12 10 8
14 14 N 1.47024 * 107.28630 * 337.85952 * 13 12 10
15 15 C 1.34773 * 125.64717 * 178.87102 * 14 13 12
16 16 O 1.21280 * 120.00215 * 180.02562 * 15 14 13
17 17 C 1.50701 * 120.00345 * 0.04125 * 15 14 13
18 18 S 1.80992 * 109.47421 * 179.97438 * 17 15 14
19 19 C 1.76203 * 99.99819 * 180.02562 * 18 17 15
20 20 H 1.08000 * 120.00509 * 0.02562 * 19 18 17
21 21 C 1.38806 * 119.99781 * 179.97438 * 19 18 17
22 22 N 1.31631 * 120.00123 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99863 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.46981 * 90.00498 * 23 21 19
25 25 H 1.48496 * 109.47003 * 210.00591 * 23 21 19
26 26 H 1.48500 * 109.47058 * 330.00318 * 23 21 19
27 27 C 1.47427 * 108.70406 * 358.91201 * 14 13 12
28 28 H 1.09003 * 109.47292 * 270.14588 * 1 2 3
29 29 H 1.09000 * 109.47462 * 30.14968 * 1 2 3
30 30 H 1.09006 * 109.47246 * 150.14480 * 1 2 3
31 31 H 1.08000 * 125.62074 * 179.74022 * 4 3 2
32 32 H 1.08997 * 109.47419 * 209.71054 * 7 6 2
33 33 H 1.08997 * 109.46819 * 329.70889 * 7 6 2
34 34 H 1.08999 * 109.47355 * 59.42542 * 9 8 7
35 35 H 1.09001 * 109.46842 * 179.42483 * 9 8 7
36 36 H 1.09000 * 109.47154 * 299.42130 * 9 8 7
37 37 H 1.09002 * 110.72003 * 271.93189 * 12 10 8
38 38 H 1.08997 * 110.72181 * 35.21627 * 12 10 8
39 39 H 1.08998 * 109.89967 * 218.42136 * 13 12 10
40 40 H 1.08998 * 109.97221 * 97.33608 * 13 12 10
41 41 H 1.08999 * 109.46880 * 300.00709 * 17 15 14
42 42 H 1.09006 * 109.46581 * 59.99293 * 17 15 14
43 43 H 0.96997 * 119.99597 * 179.97438 * 22 21 19
44 44 H 1.09001 * 110.35988 * 265.28847 * 27 14 13
45 45 H 1.08995 * 110.46052 * 143.01975 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.3005 1.0857 0.0000
4 6 3.5430 0.6949 -0.0059
5 8 3.5734 -0.6445 -0.0043
6 6 2.2997 -1.0843 0.0028
7 6 1.8494 -2.5225 0.0059
8 7 1.6968 -2.9909 -1.3780
9 6 2.9942 -3.0326 -2.0657
10 6 1.0363 -4.3025 -1.4200
11 1 1.6258 -5.0515 -0.8914
12 6 -0.4023 -4.2193 -0.8448
13 6 -1.1281 -5.3781 -1.5615
14 7 -0.3743 -5.6731 -2.7889
15 6 -0.6735 -6.6373 -3.6817
16 8 0.0220 -6.7920 -4.6632
17 6 -1.8724 -7.5233 -3.4607
18 16 -2.0063 -8.7081 -4.8224
19 6 -3.4482 -9.5882 -4.3215
20 1 -3.9551 -9.3184 -3.4067
21 6 -3.9333 -10.6276 -5.1030
22 7 -3.3159 -10.9562 -6.2182
23 14 -5.4624 -11.5602 -4.5723
24 1 -6.6660 -10.9018 -5.1407
25 1 -5.3846 -12.9592 -5.0643
26 1 -5.5521 -11.5612 -3.0900
27 6 0.7635 -4.7401 -2.8807
28 1 -0.3634 0.0026 1.0277
29 1 -0.3634 0.8886 -0.5161
30 1 -0.3634 -0.8913 -0.5116
31 1 4.4065 1.3436 -0.0114
32 1 2.5924 -3.1348 0.5169
33 1 0.8938 -2.6028 0.5241
34 1 3.6667 -3.7046 -1.5326
35 1 2.8537 -3.3924 -3.0850
36 1 3.4249 -2.0315 -2.0900
37 1 -0.3959 -4.3759 0.2339
38 1 -0.8627 -3.2633 -1.0942
39 1 -2.1454 -5.0790 -1.8141
40 1 -1.1493 -6.2582 -0.9189
41 1 -1.7577 -8.0617 -2.5200
42 1 -2.7738 -6.9116 -3.4216
43 1 -3.6548 -11.6828 -6.7641
44 1 0.4981 -3.8775 -3.4919
45 1 1.6366 -5.2437 -3.2954
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001188966558.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:16
Heat of formation + Delta-G solvation = 1.777772 kcal
Electronic energy + Delta-G solvation = -26559.330262 eV
Core-core repulsion = 22705.250437 eV
Total energy + Delta-G solvation = -3854.079825 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.71282 -40.09880 -38.28251 -36.12066 -35.50733 -32.51022 -32.43578 -31.19264
-29.90718 -28.94787 -27.81370 -26.89242 -25.50640 -24.50157 -22.91479 -22.52259
-21.15045 -20.52320 -19.35887 -17.78322 -17.49553 -17.31305 -16.77944 -16.62850
-15.78459 -15.40392 -15.12162 -14.98766 -14.81011 -14.59526 -14.20031 -13.85601
-13.70173 -13.58612 -13.45601 -13.13503 -13.01704 -12.64726 -12.56958 -12.45855
-12.40142 -12.30055 -11.82106 -11.55345 -11.36456 -11.25799 -11.19749 -11.06907
-11.02682 -10.86877 -10.77172 -9.82766 -9.44778 -9.14749 -9.07341 -8.85692
-8.53605 -8.24435 -6.51269 -6.22364 -3.93157 1.03465 2.27032 2.36727
2.83041 3.03727 3.21735 3.23673 3.29257 3.46824 3.67366 3.79328
4.03675 4.19593 4.26338 4.36469 4.48585 4.64394 4.72274 4.79031
4.97141 5.02757 5.07652 5.09940 5.12803 5.17221 5.26313 5.27900
5.36949 5.44864 5.49760 5.56534 5.59487 5.61754 5.67739 5.71076
5.74162 5.78065 5.92296 6.01384 6.12459 6.32930 6.39942 6.56319
7.35153 7.58616 7.63194 8.34432 8.52826 9.22835 10.85061
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031938 B = 0.001897 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 876.475988 B =14758.817649 C =15281.987019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.008 3.992
3 N -0.488 5.488
4 C 0.171 3.829
5 O -0.205 6.205
6 C -0.042 4.042
7 C 0.141 3.859
8 N -0.526 5.526
9 C 0.020 3.980
10 C 0.068 3.932
11 H 0.064 0.936
12 C -0.126 4.126
13 C 0.104 3.896
14 N -0.626 5.626
15 C 0.549 3.451
16 O -0.515 6.515
17 C -0.146 4.146
18 S -0.061 6.061
19 C -0.535 4.535
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.867 5.867
23 Si 0.919 3.081
24 H -0.277 1.277
25 H -0.282 1.282
26 H -0.272 1.272
27 C 0.120 3.880
28 H 0.072 0.928
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.248 0.752
32 H 0.055 0.945
33 H 0.111 0.889
34 H 0.032 0.968
35 H 0.078 0.922
36 H 0.068 0.932
37 H 0.081 0.919
38 H 0.090 0.910
39 H 0.073 0.927
40 H 0.070 0.930
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.268 0.732
44 H 0.076 0.924
45 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.452 21.686 17.394 30.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.113 4.113
3 N -0.217 5.217
4 C -0.056 4.056
5 O -0.091 6.091
6 C -0.095 4.095
7 C 0.013 3.987
8 N -0.251 5.251
9 C -0.128 4.128
10 C -0.041 4.041
11 H 0.082 0.918
12 C -0.164 4.164
13 C -0.020 4.020
14 N -0.364 5.364
15 C 0.338 3.662
16 O -0.389 6.389
17 C -0.297 4.297
18 S 0.166 5.834
19 C -0.683 4.683
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.502 5.502
23 Si 0.745 3.255
24 H -0.203 1.203
25 H -0.208 1.208
26 H -0.197 1.197
27 C -0.004 4.004
28 H 0.091 0.909
29 H 0.094 0.906
30 H 0.100 0.900
31 H 0.264 0.736
32 H 0.074 0.926
33 H 0.129 0.871
34 H 0.050 0.950
35 H 0.096 0.904
36 H 0.087 0.913
37 H 0.100 0.900
38 H 0.108 0.892
39 H 0.091 0.909
40 H 0.088 0.912
41 H 0.107 0.893
42 H 0.108 0.892
43 H 0.078 0.922
44 H 0.094 0.906
45 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 12.015 22.170 15.455 29.575
hybrid contribution -0.812 -1.419 1.924 2.525
sum 11.203 20.751 17.380 29.294
Atomic orbital electron populations
1.20168 0.86339 1.03950 1.02675 1.21511 0.98062 0.87276 1.04409
1.70386 1.01445 1.31891 1.17969 1.27995 0.97604 0.79295 1.00692
1.84436 1.30301 1.24675 1.69731 1.22899 0.80673 0.97456 1.08518
1.20438 1.01464 0.86171 0.90591 1.62004 1.22840 1.26171 1.14106
1.22479 0.88889 1.01842 0.99586 1.22834 0.95141 0.89025 0.97114
0.91825 1.22773 0.94130 0.99547 0.99923 1.21982 0.96143 0.97773
0.86093 1.48415 1.29272 1.34564 1.24166 1.20035 0.85950 0.78862
0.81350 1.90713 1.51256 1.69012 1.27897 1.23501 0.97484 1.01581
1.07097 1.85413 1.37318 1.35189 1.25519 1.22856 1.13286 1.20512
1.11661 0.90913 1.24999 0.97737 0.96307 0.94566 1.70019 1.39112
1.28493 1.12624 0.86163 0.81717 0.78751 0.78840 1.20254 1.20753
1.19697 1.22043 0.90211 0.93158 0.94980 0.90893 0.90596 0.89983
0.73592 0.92649 0.87135 0.94981 0.90356 0.91321 0.90011 0.89186
0.90878 0.91158 0.89294 0.89227 0.92174 0.90558 0.90523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.50 10.05 36.00 0.36 -0.14 16
2 C 0.01 0.07 7.11 -82.81 -0.59 -0.52 16
3 N -0.49 -4.76 11.29 -11.18 -0.13 -4.88 16
4 C 0.17 1.20 13.23 52.09 0.69 1.89 16
5 O -0.21 -1.70 10.21 5.33 0.05 -1.65 16
6 C -0.04 -0.35 5.94 -35.69 -0.21 -0.56 16
7 C 0.14 0.93 5.00 -4.98 -0.02 0.90 16
8 N -0.53 -4.10 4.65 -233.75 -1.09 -5.18 16
9 C 0.02 0.16 9.19 60.06 0.55 0.71 16
10 C 0.07 0.56 2.71 -65.56 -0.18 0.38 16
11 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
12 C -0.13 -0.86 5.38 -24.87 -0.13 -1.00 16
13 C 0.10 1.02 6.49 -3.03 -0.02 1.00 16
14 N -0.63 -8.78 3.33 -170.49 -0.57 -9.35 16
15 C 0.55 10.53 7.87 -10.99 -0.09 10.44 16
16 O -0.51 -11.94 16.12 5.56 0.09 -11.85 16
17 C -0.15 -2.97 5.35 36.01 0.19 -2.78 16
18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16
19 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16
20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16
21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
22 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16
23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16
24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16
27 C 0.12 1.40 5.30 -2.53 -0.01 1.39 16
28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
30 H 0.08 0.49 7.80 -51.93 -0.40 0.08 16
31 H 0.25 0.52 8.06 -52.49 -0.42 0.10 16
32 H 0.06 0.35 8.12 -51.93 -0.42 -0.08 16
33 H 0.11 0.55 6.45 -51.93 -0.34 0.21 16
34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16
35 H 0.08 0.65 6.89 -51.93 -0.36 0.30 16
36 H 0.07 0.58 6.86 -51.93 -0.36 0.22 16
37 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16
38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16
43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
44 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
45 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16
LS Contribution 386.26 15.07 5.82 5.82
Total: -1.00 -36.61 386.26 -8.46 -45.07
By element:
Atomic # 1 Polarization: 3.04 SS G_CDS: -6.88 Total: -3.84 kcal
Atomic # 6 Polarization: -1.90 SS G_CDS: 0.74 Total: -1.16 kcal
Atomic # 7 Polarization: -43.74 SS G_CDS: -1.05 Total: -44.79 kcal
Atomic # 8 Polarization: -13.65 SS G_CDS: 0.14 Total: -13.50 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -36.61 -8.46 -45.07 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188966558.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.851 kcal
(2) G-P(sol) polarization free energy of solvation -36.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds