Wall clock time and date at job start Tue Mar 31 2020 22:47:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.34484 * 126.16351 * 2 1
4 4 C 1.30255 * 108.70214 * 180.27328 * 3 2 1
5 5 O 1.33970 * 108.76080 * 359.75239 * 4 3 2
6 6 C 1.34323 * 126.16956 * 179.85271 * 2 1 3
7 7 C 1.50697 * 126.44470 * 0.02562 * 6 2 1
8 8 N 1.46903 * 109.47382 * 89.70756 * 7 6 2
9 9 C 1.46900 * 110.99855 * 66.05019 * 8 7 6
10 10 C 1.46907 * 110.99812 * 190.00318 * 8 7 6
11 11 H 1.08995 * 110.88539 * 298.90979 * 10 8 7
12 12 C 1.55158 * 111.00247 * 62.79268 * 10 8 7
13 13 C 1.54378 * 102.91886 * 153.54526 * 12 10 8
14 14 N 1.47024 * 107.28630 * 337.85952 * 13 12 10
15 15 C 1.34773 * 125.64717 * 178.87102 * 14 13 12
16 16 O 1.21280 * 120.00215 * 180.02562 * 15 14 13
17 17 C 1.50701 * 120.00345 * 0.04125 * 15 14 13
18 18 S 1.80992 * 109.47421 * 179.97438 * 17 15 14
19 19 C 1.76203 * 99.99819 * 180.02562 * 18 17 15
20 20 H 1.08000 * 120.00509 * 0.02562 * 19 18 17
21 21 C 1.38806 * 119.99781 * 179.97438 * 19 18 17
22 22 N 1.31631 * 120.00123 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99863 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.46981 * 90.00498 * 23 21 19
25 25 H 1.48496 * 109.47003 * 210.00591 * 23 21 19
26 26 H 1.48500 * 109.47058 * 330.00318 * 23 21 19
27 27 C 1.47427 * 108.70406 * 358.91201 * 14 13 12
28 28 H 1.09003 * 109.47292 * 270.14588 * 1 2 3
29 29 H 1.09000 * 109.47462 * 30.14968 * 1 2 3
30 30 H 1.09006 * 109.47246 * 150.14480 * 1 2 3
31 31 H 1.08000 * 125.62074 * 179.74022 * 4 3 2
32 32 H 1.08997 * 109.47419 * 209.71054 * 7 6 2
33 33 H 1.08997 * 109.46819 * 329.70889 * 7 6 2
34 34 H 1.08999 * 109.47355 * 59.42542 * 9 8 7
35 35 H 1.09001 * 109.46842 * 179.42483 * 9 8 7
36 36 H 1.09000 * 109.47154 * 299.42130 * 9 8 7
37 37 H 1.09002 * 110.72003 * 271.93189 * 12 10 8
38 38 H 1.08997 * 110.72181 * 35.21627 * 12 10 8
39 39 H 1.08998 * 109.89967 * 218.42136 * 13 12 10
40 40 H 1.08998 * 109.97221 * 97.33608 * 13 12 10
41 41 H 1.08999 * 109.46880 * 300.00709 * 17 15 14
42 42 H 1.09006 * 109.46581 * 59.99293 * 17 15 14
43 43 H 0.96997 * 119.99597 * 179.97438 * 22 21 19
44 44 H 1.09001 * 110.35988 * 265.28847 * 27 14 13
45 45 H 1.08995 * 110.46052 * 143.01975 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.3005 1.0857 0.0000
4 6 3.5430 0.6949 -0.0059
5 8 3.5734 -0.6445 -0.0043
6 6 2.2997 -1.0843 0.0028
7 6 1.8494 -2.5225 0.0059
8 7 1.6968 -2.9909 -1.3780
9 6 2.9942 -3.0326 -2.0657
10 6 1.0363 -4.3025 -1.4200
11 1 1.6258 -5.0515 -0.8914
12 6 -0.4023 -4.2193 -0.8448
13 6 -1.1281 -5.3781 -1.5615
14 7 -0.3743 -5.6731 -2.7889
15 6 -0.6735 -6.6373 -3.6817
16 8 0.0220 -6.7920 -4.6632
17 6 -1.8724 -7.5233 -3.4607
18 16 -2.0063 -8.7081 -4.8224
19 6 -3.4482 -9.5882 -4.3215
20 1 -3.9551 -9.3184 -3.4067
21 6 -3.9333 -10.6276 -5.1030
22 7 -3.3159 -10.9562 -6.2182
23 14 -5.4624 -11.5602 -4.5723
24 1 -6.6660 -10.9018 -5.1407
25 1 -5.3846 -12.9592 -5.0643
26 1 -5.5521 -11.5612 -3.0900
27 6 0.7635 -4.7401 -2.8807
28 1 -0.3634 0.0026 1.0277
29 1 -0.3634 0.8886 -0.5161
30 1 -0.3634 -0.8913 -0.5116
31 1 4.4065 1.3436 -0.0114
32 1 2.5924 -3.1348 0.5169
33 1 0.8938 -2.6028 0.5241
34 1 3.6667 -3.7046 -1.5326
35 1 2.8537 -3.3924 -3.0850
36 1 3.4249 -2.0315 -2.0900
37 1 -0.3959 -4.3759 0.2339
38 1 -0.8627 -3.2633 -1.0942
39 1 -2.1454 -5.0790 -1.8141
40 1 -1.1493 -6.2582 -0.9189
41 1 -1.7577 -8.0617 -2.5200
42 1 -2.7738 -6.9116 -3.4216
43 1 -3.6548 -11.6828 -6.7641
44 1 0.4981 -3.8775 -3.4919
45 1 1.6366 -5.2437 -3.2954
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188966558.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:16
Heat of formation + Delta-G solvation = -26.477211 kcal
Electronic energy + Delta-G solvation = -26560.555490 eV
Core-core repulsion = 22705.250437 eV
Total energy + Delta-G solvation = -3855.305053 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-44.27262 -41.17447 -39.36684 -37.08532 -36.08933 -34.58268 -33.21443 -32.20232
-30.95328 -29.78123 -28.68926 -27.70369 -27.46699 -25.26942 -23.79336 -23.09949
-21.77442 -21.18104 -20.68952 -19.58914 -18.21487 -18.04071 -17.87311 -17.52093
-16.87999 -16.72302 -16.37879 -16.07088 -15.88398 -15.56468 -15.46453 -15.00107
-14.57039 -14.35559 -14.19791 -14.08464 -13.95745 -13.79011 -13.66255 -13.40173
-13.15256 -13.14866 -12.94326 -12.88480 -12.86592 -12.60175 -12.26141 -12.00388
-11.91493 -11.83117 -11.72883 -11.46925 -11.13835 -11.00051 -10.27928 -9.72736
-9.71076 -9.43392 -8.68040 -8.34270 -6.13070 0.48109 1.23518 1.43387
1.44996 1.54835 1.56341 1.71435 1.86049 2.06278 2.27665 2.89320
2.99935 3.19319 3.36593 3.39442 3.62334 3.73666 3.88610 3.96264
4.04518 4.16945 4.20380 4.25313 4.34932 4.38749 4.45412 4.49389
4.53290 4.65022 4.76252 4.80524 4.82482 4.86127 4.89101 4.94285
5.00227 5.07090 5.19583 5.22420 5.32008 5.42211 5.50579 5.80110
5.90537 6.20213 6.37167 6.79394 7.06787 7.09592 8.75006
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031938 B = 0.001897 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 876.475988 B =14758.817649 C =15281.987019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.011 4.011
3 N -0.527 5.527
4 C 0.179 3.821
5 O -0.215 6.215
6 C -0.052 4.052
7 C 0.144 3.856
8 N -0.530 5.530
9 C 0.023 3.977
10 C 0.081 3.919
11 H 0.070 0.930
12 C -0.112 4.112
13 C 0.091 3.909
14 N -0.616 5.616
15 C 0.546 3.454
16 O -0.569 6.569
17 C -0.118 4.118
18 S -0.154 6.154
19 C -0.544 4.544
20 H 0.084 0.916
21 C 0.012 3.988
22 N -0.912 5.912
23 Si 1.000 3.000
24 H -0.268 1.268
25 H -0.279 1.279
26 H -0.256 1.256
27 C 0.116 3.884
28 H 0.086 0.914
29 H 0.066 0.934
30 H 0.091 0.909
31 H 0.287 0.713
32 H 0.063 0.937
33 H 0.133 0.867
34 H 0.037 0.963
35 H 0.067 0.933
36 H 0.063 0.937
37 H 0.117 0.883
38 H 0.099 0.901
39 H 0.082 0.918
40 H 0.083 0.917
41 H 0.109 0.891
42 H 0.108 0.892
43 H 0.271 0.729
44 H 0.071 0.929
45 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.398 22.554 20.634 32.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.130 4.130
3 N -0.257 5.257
4 C -0.047 4.047
5 O -0.102 6.102
6 C -0.105 4.105
7 C 0.017 3.983
8 N -0.255 5.255
9 C -0.125 4.125
10 C -0.028 4.028
11 H 0.088 0.912
12 C -0.150 4.150
13 C -0.031 4.031
14 N -0.351 5.351
15 C 0.334 3.666
16 O -0.448 6.448
17 C -0.269 4.269
18 S 0.073 5.927
19 C -0.692 4.692
20 H 0.103 0.897
21 C -0.193 4.193
22 N -0.548 5.548
23 Si 0.821 3.179
24 H -0.193 1.193
25 H -0.204 1.204
26 H -0.180 1.180
27 C -0.007 4.007
28 H 0.104 0.896
29 H 0.085 0.915
30 H 0.110 0.890
31 H 0.302 0.698
32 H 0.081 0.919
33 H 0.151 0.849
34 H 0.055 0.945
35 H 0.086 0.914
36 H 0.082 0.918
37 H 0.135 0.865
38 H 0.118 0.882
39 H 0.100 0.900
40 H 0.101 0.899
41 H 0.127 0.873
42 H 0.126 0.874
43 H 0.080 0.920
44 H 0.090 0.910
45 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 10.955 23.087 18.757 31.700
hybrid contribution -0.369 -1.511 0.971 1.834
sum 10.586 21.576 19.728 31.093
Atomic orbital electron populations
1.20222 0.85210 1.03965 1.03536 1.21914 0.99095 0.87431 1.04597
1.70393 1.02718 1.32819 1.19751 1.28928 0.98143 0.79230 0.98364
1.84446 1.30536 1.25296 1.69889 1.23146 0.80563 0.98029 1.08773
1.20551 1.02819 0.85252 0.89686 1.61962 1.22603 1.25723 1.15202
1.22410 0.89306 1.01545 0.99236 1.22673 0.96465 0.89402 0.94266
0.91222 1.22808 0.92079 0.98650 1.01471 1.22399 0.96534 0.99686
0.84495 1.48338 1.29876 1.32781 1.24155 1.19804 0.85323 0.79798
0.81640 1.90690 1.52807 1.70887 1.30404 1.23288 0.99066 1.00209
1.04334 1.85625 1.38216 1.38290 1.30576 1.23192 1.13182 1.20738
1.12097 0.89747 1.26158 1.01412 0.97295 0.94393 1.70190 1.41212
1.29293 1.14127 0.84934 0.76852 0.76932 0.79142 1.19313 1.20379
1.18003 1.22158 0.88693 0.92124 0.97772 0.89555 0.91516 0.88983
0.69795 0.91930 0.84931 0.94480 0.91403 0.91840 0.86488 0.88205
0.89969 0.89891 0.87308 0.87401 0.92009 0.91033 0.92379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.84 10.05 71.23 0.72 -0.12 16
2 C -0.01 -0.18 7.11 41.26 0.29 0.12 16
3 N -0.53 -9.71 11.29 -304.07 -3.43 -13.14 16
4 C 0.18 2.24 13.23 130.48 1.73 3.96 16
5 O -0.21 -3.23 10.21 -3.83 -0.04 -3.27 16
6 C -0.05 -0.77 5.94 24.79 0.15 -0.62 16
7 C 0.14 1.47 5.00 85.56 0.43 1.90 16
8 N -0.53 -7.08 4.65 -893.44 -4.16 -11.24 16
9 C 0.02 0.35 9.19 127.69 1.17 1.52 16
10 C 0.08 1.12 2.71 46.30 0.13 1.25 16
11 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
12 C -0.11 -1.07 5.38 31.80 0.17 -0.89 16
13 C 0.09 1.49 6.49 86.75 0.56 2.05 16
14 N -0.62 -16.54 3.33 -811.70 -2.70 -19.24 16
15 C 0.55 21.04 7.87 87.66 0.69 21.73 16
16 O -0.57 -27.53 16.12 -3.03 -0.05 -27.58 16
17 C -0.12 -4.73 5.35 71.24 0.38 -4.35 16
18 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16
19 C -0.54 -30.97 9.50 67.96 0.65 -30.33 16
20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16
21 C 0.01 0.69 5.49 84.86 0.47 1.15 16
22 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16
23 Si 1.00 43.28 29.55 68.60 2.03 45.31 16
24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
26 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16
27 C 0.12 2.64 5.30 86.85 0.46 3.10 16
28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.09 0.84 7.80 -2.38 -0.02 0.82 16
31 H 0.29 0.53 8.06 -2.91 -0.02 0.51 16
32 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16
33 H 0.13 0.74 6.45 -2.39 -0.02 0.72 16
34 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
35 H 0.07 1.15 6.89 -2.39 -0.02 1.13 16
36 H 0.06 1.03 6.86 -2.39 -0.02 1.01 16
37 H 0.12 0.41 7.88 -2.39 -0.02 0.39 16
38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16
42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16
43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
45 H 0.06 1.55 7.80 -2.39 -0.02 1.53 16
Total: -1.00 -83.70 386.26 -0.26 -83.95
By element:
Atomic # 1 Polarization: 9.39 SS G_CDS: 0.99 Total: 10.38 kcal
Atomic # 6 Polarization: -7.53 SS G_CDS: 7.99 Total: 0.45 kcal
Atomic # 7 Polarization: -89.44 SS G_CDS: -10.00 Total: -99.44 kcal
Atomic # 8 Polarization: -30.76 SS G_CDS: -0.09 Total: -30.85 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal
Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal
Total: -83.70 -0.26 -83.95 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188966558.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.475 kcal
(2) G-P(sol) polarization free energy of solvation -83.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.477 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds