Wall clock time and date at job start Tue Mar 31 2020 22:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35451 * 126.77280 * 2 1 4 4 C 1.41381 * 103.98257 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80178 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46919 * 95.00399 * 5 4 3 7 7 C 1.46203 * 110.99965 * 64.99149 * 6 5 4 8 8 C 1.51271 * 109.10317 * 144.76950 * 7 6 5 9 9 C 1.54168 * 109.77405 * 92.30669 * 8 7 6 10 10 N 1.47618 * 111.09616 * 320.24181 * 9 8 7 11 11 C 1.34777 * 118.74495 * 138.20128 * 10 9 8 12 12 O 1.21278 * 119.99854 * 179.73911 * 11 10 9 13 13 C 1.50703 * 120.00161 * 359.73218 * 11 10 9 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47405 * 90.00153 * 19 17 15 21 21 H 1.48505 * 109.47032 * 209.99913 * 19 17 15 22 22 H 1.48497 * 109.47409 * 329.99921 * 19 17 15 23 23 C 1.44879 * 122.50546 * 317.92025 * 10 9 8 24 24 C 1.41443 * 111.00268 * 293.95239 * 6 5 4 25 25 N 1.30176 * 106.39332 * 0.26782 * 4 3 2 26 26 O 1.20919 * 111.60928 * 359.53370 * 25 4 3 27 27 H 1.08998 * 109.47326 * 90.00003 * 1 2 3 28 28 H 1.09004 * 109.46795 * 209.99989 * 1 2 3 29 29 H 1.08996 * 109.46960 * 329.99771 * 1 2 3 30 30 H 1.08002 * 128.00897 * 359.94905 * 3 2 1 31 31 H 1.09001 * 109.46988 * 335.00098 * 5 4 3 32 32 H 1.09002 * 109.46907 * 215.00611 * 5 4 3 33 33 H 1.08995 * 109.53063 * 264.65937 * 7 6 5 34 34 H 1.09003 * 109.53330 * 24.80810 * 7 6 5 35 35 H 1.08997 * 109.44452 * 212.45125 * 8 7 6 36 36 H 1.09001 * 109.44506 * 332.38887 * 8 7 6 37 37 H 1.09003 * 109.31613 * 199.77649 * 9 8 7 38 38 H 1.09001 * 109.12489 * 80.59061 * 9 8 7 39 39 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 40 40 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 41 41 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.43848 * 210.06919 * 23 10 9 43 43 H 1.09001 * 109.43846 * 329.98716 * 23 10 9 44 44 H 1.09000 * 109.38054 * 71.52677 * 24 6 5 45 45 H 1.08999 * 109.38230 * 311.84810 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 7 5.4042 1.4447 1.3800 7 6 5.7395 0.1437 1.9568 8 6 6.9341 0.3008 2.8715 9 6 6.4559 0.5630 4.3135 10 7 5.2900 1.4682 4.3303 11 6 4.2710 1.1971 5.1698 12 8 3.3041 1.9282 5.2057 13 6 4.3332 -0.0145 6.0638 14 16 2.8274 -0.1041 7.0641 15 6 3.1594 -1.5682 7.9865 16 1 4.0826 -2.1067 7.8309 17 6 2.2350 -2.0288 8.9137 18 7 1.1106 -1.3717 9.1044 19 14 2.5875 -3.5806 9.8921 20 1 3.2970 -3.2242 11.1470 21 1 1.3082 -4.2588 10.2223 22 1 3.4372 -4.4925 9.0849 23 6 5.2019 2.6401 3.4830 24 6 4.5344 2.2623 2.1387 25 7 3.4763 -0.7563 -0.0049 26 8 2.3095 -1.0736 0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 2.0344 2.1271 -0.0008 31 1 4.7631 2.2870 -0.4347 32 1 5.6606 0.7576 -0.5887 33 1 4.8903 -0.2316 2.5276 34 1 5.9805 -0.5578 1.1581 35 1 7.5319 -0.6104 2.8473 36 1 7.5406 1.1417 2.5352 37 1 7.2665 1.0144 4.8856 38 1 6.1789 -0.3845 4.7757 39 1 5.2010 0.0614 6.7190 40 1 4.4170 -0.9131 5.4525 41 1 0.4644 -1.6939 9.7522 42 1 4.6058 3.4043 3.9818 43 1 6.2032 3.0271 3.2940 44 1 3.6083 1.7217 2.3338 45 1 4.3105 3.1699 1.5782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194913142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:28 Heat of formation + Delta-G solvation = 16.768842 kcal Electronic energy + Delta-G solvation = -27910.333158 eV Core-core repulsion = 24056.903395 eV Total energy + Delta-G solvation = -3853.429763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.93534 -41.46936 -39.47852 -36.80745 -34.87534 -34.62327 -34.11670 -33.69325 -31.67205 -29.46779 -28.74503 -27.73237 -27.54696 -26.23095 -24.04536 -23.49522 -22.07975 -20.77830 -20.35697 -19.45114 -18.72515 -18.24704 -18.12927 -17.47712 -17.04690 -16.91531 -16.53465 -16.40445 -16.04656 -15.70052 -15.11817 -14.80132 -14.70583 -14.59594 -14.50329 -14.16739 -14.04182 -13.81980 -13.51357 -13.33690 -13.22384 -13.13962 -12.95499 -12.89303 -12.70715 -12.51551 -12.42196 -12.13277 -11.92447 -11.82897 -11.73007 -11.17559 -11.17337 -10.89232 -10.32215 -10.30181 -9.72800 -9.45800 -8.71889 -8.38105 -6.17066 0.46360 1.19487 1.22386 1.39804 1.42737 1.51823 1.54211 2.10275 2.17514 2.24010 2.84691 2.95988 3.18545 3.21489 3.46936 3.63768 3.74402 3.93119 4.05385 4.07456 4.11050 4.19364 4.23541 4.30413 4.35935 4.40417 4.44577 4.55198 4.57782 4.63390 4.70148 4.70774 4.79440 4.83560 4.83980 4.96702 4.99787 5.07492 5.17712 5.22131 5.37522 5.65390 5.95479 6.11604 6.16127 6.29296 7.02905 7.11286 7.23517 8.71334 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.003405 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.257353 B = 8220.197511 C = 9447.513007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.035 4.035 3 C -0.241 4.241 4 C -0.018 4.018 5 C 0.139 3.861 6 N -0.531 5.531 7 C 0.075 3.925 8 C -0.116 4.116 9 C 0.097 3.903 10 N -0.600 5.600 11 C 0.526 3.474 12 O -0.562 6.562 13 C -0.124 4.124 14 S -0.148 6.148 15 C -0.548 4.548 16 H 0.080 0.920 17 C 0.016 3.984 18 N -0.910 5.910 19 Si 0.998 3.002 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.260 1.260 23 C 0.119 3.881 24 C 0.064 3.936 25 N -0.390 5.390 26 O 0.069 5.931 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.190 0.810 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.002 0.998 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.272 0.728 42 H 0.072 0.928 43 H 0.114 0.886 44 H -0.007 1.007 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 6.289 -22.071 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.262 4.262 4 C -0.179 4.179 5 C 0.011 3.989 6 N -0.254 5.254 7 C -0.052 4.052 8 C -0.155 4.155 9 C -0.024 4.024 10 N -0.334 5.334 11 C 0.313 3.687 12 O -0.441 6.441 13 C -0.275 4.275 14 S 0.079 5.921 15 C -0.696 4.696 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.819 3.181 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.004 4.004 24 C -0.066 4.066 25 N -0.099 5.099 26 O 0.007 5.993 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.208 0.792 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.020 0.980 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.012 0.988 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.022 6.586 -21.948 25.011 hybrid contribution -0.483 -1.507 0.883 1.813 sum 9.539 5.079 -21.065 23.675 Atomic orbital electron populations 1.20549 0.81684 1.05476 1.05575 1.25264 0.97935 0.85751 1.00873 1.22801 0.91113 1.01938 1.10386 1.25078 1.00265 0.90301 1.02244 1.20962 0.87466 1.00105 0.90394 1.58942 1.46813 1.17079 1.02532 1.21485 0.96872 0.89232 0.97640 1.21875 0.97175 1.04735 0.91677 1.22402 0.87292 0.93442 0.99294 1.47868 1.18930 1.27623 1.38967 1.20171 0.82550 0.85591 0.80398 1.90656 1.33594 1.50709 1.69128 1.23383 1.04095 0.99187 1.00820 1.85498 1.23015 1.36198 1.47369 1.23174 1.08277 1.11752 1.26401 0.90222 1.26113 0.93930 1.01539 0.97306 1.70178 1.09186 1.40805 1.34481 0.84965 0.78114 0.76768 0.78215 1.19037 1.20071 1.18384 1.21642 1.03189 0.86687 0.88870 1.21661 0.92347 0.97682 0.94929 1.73812 0.97523 1.17666 1.20899 1.84759 1.11732 1.34518 1.68301 0.86939 0.89835 0.87892 0.79232 0.85725 0.88087 0.97989 0.90643 0.88162 0.88236 0.88972 0.90798 0.87549 0.88777 0.91896 0.90925 0.86760 0.98846 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.45 71.24 0.74 -0.36 16 2 C -0.04 -0.79 7.49 25.04 0.19 -0.60 16 3 C -0.24 -5.11 10.49 22.40 0.23 -4.87 16 4 C -0.02 -0.41 5.29 43.58 0.23 -0.18 16 5 C 0.14 2.32 5.69 85.56 0.49 2.81 16 6 N -0.53 -10.11 4.00 -916.20 -3.67 -13.77 16 7 C 0.08 1.66 4.45 85.87 0.38 2.04 16 8 C -0.12 -1.91 5.79 30.42 0.18 -1.73 16 9 C 0.10 2.05 6.03 86.56 0.52 2.57 16 10 N -0.60 -17.10 2.17 -817.16 -1.78 -18.88 16 11 C 0.53 20.99 7.65 87.66 0.67 21.66 16 12 O -0.56 -27.10 15.29 -3.02 -0.05 -27.15 16 13 C -0.12 -5.31 4.49 71.24 0.32 -4.99 16 14 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 15 C -0.55 -32.18 9.50 67.95 0.65 -31.54 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 17 C 0.02 0.93 5.49 84.86 0.47 1.39 16 18 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 19 Si 1.00 44.28 29.55 68.60 2.03 46.30 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 23 C 0.12 2.81 5.51 87.29 0.48 3.29 16 24 C 0.06 1.42 4.90 87.90 0.43 1.85 16 25 N -0.39 -11.16 11.85 -49.55 -0.59 -11.74 16 26 O 0.07 1.96 11.20 71.65 0.80 2.76 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.19 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.12 1.39 7.92 -2.39 -0.02 1.37 16 32 H 0.10 1.52 7.93 -2.39 -0.02 1.50 16 33 H 0.00 0.05 7.33 -2.39 -0.02 0.03 16 34 H 0.08 1.65 7.57 -2.39 -0.02 1.63 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.34 7.98 -2.39 -0.02 1.32 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.73 5.87 -2.39 -0.01 1.72 16 39 H 0.11 4.14 8.03 -2.39 -0.02 4.12 16 40 H 0.09 3.86 7.42 -2.39 -0.02 3.84 16 41 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 42 H 0.07 1.99 7.28 -2.39 -0.02 1.97 16 43 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 44 H -0.01 -0.21 7.17 -2.39 -0.02 -0.23 16 45 H 0.11 1.83 7.85 -2.39 -0.02 1.81 16 Total: -1.00 -82.31 377.74 2.85 -79.46 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.99 Total: 17.66 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 5.98 Total: -8.66 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -5.74 Total: -100.70 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: 0.76 Total: -24.39 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.31 2.85 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194913142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.229 kcal (2) G-P(sol) polarization free energy of solvation -82.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds