Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30180 * 126.80166 * 2 1 4 4 O 1.20915 * 111.60427 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.57264 * 359.76261 * 4 3 2 6 6 C 1.35455 * 106.44151 * 0.37999 * 5 4 3 7 7 C 1.50699 * 128.00738 * 179.90809 * 6 5 4 8 8 N 1.46901 * 109.46896 * 97.50650 * 7 6 5 9 9 C 1.46199 * 110.99893 * 67.07112 * 8 7 6 10 10 C 1.51272 * 109.10392 * 144.76841 * 9 8 7 11 11 C 1.54182 * 109.77521 * 92.30791 * 10 9 8 12 12 N 1.47613 * 111.09272 * 320.24720 * 11 10 9 13 13 C 1.34773 * 118.74813 * 138.19545 * 12 11 10 14 14 O 1.21286 * 120.00167 * 179.72824 * 13 12 11 15 15 C 1.50698 * 120.00083 * 359.73413 * 13 12 11 16 16 S 1.81001 * 109.47425 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00088 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99977 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99740 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47107 * 89.99703 * 21 19 17 23 23 H 1.48497 * 109.47186 * 209.99870 * 21 19 17 24 24 H 1.48501 * 109.47131 * 330.00148 * 21 19 17 25 25 C 1.44884 * 122.50411 * 317.91938 * 12 11 10 26 26 C 1.41442 * 111.00245 * 296.03464 * 8 7 6 27 27 H 1.08997 * 109.46847 * 269.82794 * 1 2 3 28 28 H 1.08988 * 109.47348 * 29.83594 * 1 2 3 29 29 H 1.09005 * 109.46709 * 149.83752 * 1 2 3 30 30 H 1.08000 * 126.78262 * 180.28212 * 5 4 3 31 31 H 1.09003 * 109.47465 * 337.51023 * 7 6 5 32 32 H 1.09001 * 109.47395 * 217.50590 * 7 6 5 33 33 H 1.08997 * 109.53545 * 264.65852 * 9 8 7 34 34 H 1.09003 * 109.53202 * 24.80775 * 9 8 7 35 35 H 1.08995 * 109.44716 * 212.45497 * 10 9 8 36 36 H 1.08999 * 109.44745 * 332.39680 * 10 9 8 37 37 H 1.08999 * 109.31347 * 199.77504 * 11 10 9 38 38 H 1.08998 * 109.12322 * 80.58750 * 11 10 9 39 39 H 1.09003 * 109.47159 * 59.99549 * 15 13 12 40 40 H 1.09004 * 109.46860 * 300.00122 * 15 13 12 41 41 H 0.96998 * 119.99481 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.43401 * 210.06925 * 25 12 11 43 43 H 1.09004 * 109.43479 * 329.94075 * 25 12 11 44 44 H 1.08999 * 109.38138 * 71.52969 * 26 8 7 45 45 H 1.08998 * 109.30332 * 311.78988 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5863 -0.0002 8 7 1.6500 -3.0094 1.3722 9 6 0.4460 -2.3438 1.8670 10 6 -0.3175 -3.2992 2.7572 11 6 0.1174 -3.1063 4.2237 12 7 1.5738 -2.8862 4.3213 13 6 2.0317 -1.9456 5.1710 14 8 3.2242 -1.7493 5.2729 15 6 1.0621 -1.1378 5.9946 16 16 1.9773 0.0322 7.0287 17 6 0.6374 0.8205 7.8582 18 1 -0.3788 0.5216 7.6478 19 6 0.8881 1.8255 8.7821 20 7 2.1267 2.1894 9.0390 21 14 -0.5323 2.6607 9.6621 22 1 -0.8385 1.9262 10.9158 23 1 -0.1587 4.0606 9.9871 24 1 -1.7290 2.6591 8.7828 25 6 2.5300 -3.6469 3.5428 26 6 2.7958 -2.9291 2.1977 27 1 -0.3633 -0.0031 1.0276 28 1 -0.3633 0.8913 -0.5112 29 1 -0.3633 -0.8886 -0.5164 30 1 4.5340 -1.1533 0.0092 31 1 2.7820 -3.1864 -0.3887 32 1 1.0800 -2.7244 -0.6296 33 1 0.7273 -1.4592 2.4383 34 1 -0.1800 -2.0496 1.0246 35 1 -1.3860 -3.1040 2.6668 36 1 -0.1089 -4.3247 2.4522 37 1 -0.1488 -3.9934 4.7984 38 1 -0.4025 -2.2434 4.6398 39 1 0.4804 -1.8059 6.6298 40 1 0.3911 -0.5905 5.3324 41 1 2.3018 2.8920 9.6844 42 1 3.4637 -3.7329 4.0987 43 1 2.1305 -4.6426 3.3499 44 1 3.0326 -1.8821 2.3870 45 1 3.6370 -3.4049 1.6937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194913215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = 43.568070 kcal Electronic energy + Delta-G solvation = -28220.843692 eV Core-core repulsion = 24368.576031 eV Total energy + Delta-G solvation = -3852.267661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.07630 -40.30730 -38.40203 -35.79944 -34.43231 -32.83914 -32.42648 -32.14817 -30.17165 -29.05589 -28.14791 -26.45258 -25.58142 -25.18198 -22.52972 -21.99166 -21.43253 -20.34287 -18.94896 -17.83413 -17.69456 -17.58303 -16.70190 -16.29639 -15.93781 -15.74584 -15.33576 -14.82586 -14.80156 -14.28236 -14.02524 -13.85038 -13.74043 -13.48208 -13.35078 -13.07618 -12.73100 -12.64949 -12.51131 -12.27520 -12.22807 -11.72046 -11.61690 -11.50135 -11.26179 -11.07868 -11.04431 -11.00645 -10.86931 -10.75055 -10.03814 -9.80078 -9.64463 -9.33823 -9.06566 -8.59028 -8.42618 -8.22138 -6.50077 -6.21516 -3.92159 1.34756 2.01668 2.96671 3.05300 3.11595 3.22074 3.26148 3.30250 3.60108 3.72934 3.98608 4.20213 4.30380 4.56451 4.60051 4.71722 4.81651 4.89860 4.97780 5.04352 5.13641 5.17395 5.22444 5.28855 5.31233 5.39019 5.42508 5.46767 5.49484 5.54248 5.57410 5.59328 5.72008 5.77222 5.82258 5.85750 5.92326 5.99503 6.02286 6.11189 6.74722 6.86738 7.11165 7.53211 7.59376 8.14510 8.34998 8.57493 9.23701 10.85971 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.003367 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.126106 B = 8313.441673 C = 9092.104181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 N -0.362 5.362 4 O 0.101 5.899 5 C -0.046 4.046 6 C -0.240 4.240 7 C 0.139 3.861 8 N -0.546 5.546 9 C 0.064 3.936 10 C -0.130 4.130 11 C 0.106 3.894 12 N -0.616 5.616 13 C 0.528 3.472 14 O -0.516 6.516 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.123 3.877 26 C 0.054 3.946 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.213 0.787 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.268 0.732 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -13.928 -21.134 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 N -0.067 5.067 4 O 0.036 5.964 5 C -0.129 4.129 6 C -0.246 4.246 7 C 0.011 3.989 8 N -0.269 5.269 9 C -0.063 4.063 10 C -0.169 4.169 11 C -0.017 4.017 12 N -0.352 5.352 13 C 0.316 3.684 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.001 4.001 26 C -0.076 4.076 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.230 0.770 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.444 -12.664 -20.854 24.520 hybrid contribution -2.067 0.327 0.561 2.167 sum -4.511 -12.336 -20.294 24.174 Atomic orbital electron populations 1.20330 0.86290 1.03470 1.03599 1.23472 0.98889 0.88433 1.02895 1.73875 0.89439 1.24241 1.19137 1.84840 1.21573 1.23063 1.66970 1.25864 1.00701 0.83802 1.02540 1.22215 0.92576 0.99495 1.10267 1.20544 1.01830 0.85922 0.90565 1.58841 1.05940 1.59716 1.02373 1.21772 0.90629 0.95587 0.98335 1.21933 0.99648 1.01397 0.93904 1.22085 0.80176 1.02378 0.97047 1.47829 1.06554 1.38405 1.42370 1.20405 0.89492 0.79363 0.79171 1.90688 1.16581 1.65929 1.65807 1.23566 1.02125 1.02452 1.01949 1.85404 1.10628 1.40094 1.47380 1.22847 0.93685 1.23859 1.27929 0.91012 1.24986 0.96503 0.95977 0.96059 1.70021 1.18577 1.28874 1.32783 0.86178 0.81228 0.78558 0.79607 1.20233 1.20730 1.19703 1.21424 0.93905 0.94399 0.90402 1.21724 0.91777 1.00063 0.93991 0.89837 0.90520 0.90064 0.77013 0.89435 0.89484 0.93652 0.90526 0.90319 0.90142 0.91703 0.89786 0.89353 0.89603 0.92186 0.89425 0.90244 0.94704 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 8.48 36.01 0.31 -0.40 16 2 C 0.02 0.27 6.99 -82.10 -0.57 -0.31 16 3 N -0.36 -5.23 12.07 33.42 0.40 -4.82 16 4 O 0.10 1.32 11.20 17.18 0.19 1.51 16 5 C -0.05 -0.45 11.82 29.74 0.35 -0.10 16 6 C -0.24 -2.36 4.39 -104.42 -0.46 -2.81 16 7 C 0.14 1.04 5.60 -4.98 -0.03 1.01 16 8 N -0.55 -4.89 4.00 -240.94 -0.96 -5.86 16 9 C 0.06 0.60 3.42 -5.08 -0.02 0.58 16 10 C -0.13 -1.07 5.79 -26.98 -0.16 -1.23 16 11 C 0.11 1.14 6.03 -2.81 -0.02 1.12 16 12 N -0.62 -8.61 2.17 -172.21 -0.37 -8.99 16 13 C 0.53 10.12 7.65 -10.99 -0.08 10.03 16 14 O -0.52 -11.83 15.29 5.55 0.08 -11.75 16 15 C -0.15 -3.11 4.49 36.00 0.16 -2.95 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.12 1.47 5.51 -3.97 -0.02 1.44 16 26 C 0.05 0.59 4.88 -5.74 -0.03 0.56 16 27 H 0.08 0.77 7.13 -51.93 -0.37 0.40 16 28 H 0.08 0.66 8.14 -51.94 -0.42 0.24 16 29 H 0.08 0.51 7.08 -51.93 -0.37 0.15 16 30 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.09 0.51 7.97 -51.93 -0.41 0.10 16 32 H 0.09 0.54 7.64 -51.93 -0.40 0.15 16 33 H 0.05 0.59 7.17 -51.93 -0.37 0.22 16 34 H 0.08 0.59 4.65 -51.93 -0.24 0.35 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.63 7.98 -51.93 -0.41 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.96 5.87 -51.93 -0.30 0.66 16 39 H 0.09 1.70 8.03 -51.91 -0.42 1.28 16 40 H 0.09 1.67 7.42 -51.91 -0.39 1.29 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.09 1.19 7.28 -51.93 -0.38 0.81 16 43 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.03 0.51 7.21 -51.93 -0.37 0.13 16 45 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -36.41 369.45 -8.46 -44.87 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.50 Total: -1.34 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.37 Total: -6.13 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.20 Total: -45.40 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.28 Total: -10.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.41 -8.46 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194913215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.437 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds