Wall clock time and date at job start Tue Mar 31 2020 22:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30180 * 126.80166 * 2 1 4 4 O 1.20915 * 111.60427 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.57264 * 359.76261 * 4 3 2 6 6 C 1.35455 * 106.44151 * 0.37999 * 5 4 3 7 7 C 1.50699 * 128.00738 * 179.90809 * 6 5 4 8 8 N 1.46901 * 109.46896 * 97.50650 * 7 6 5 9 9 C 1.46199 * 110.99893 * 67.07112 * 8 7 6 10 10 C 1.51272 * 109.10392 * 144.76841 * 9 8 7 11 11 C 1.54182 * 109.77521 * 92.30791 * 10 9 8 12 12 N 1.47613 * 111.09272 * 320.24720 * 11 10 9 13 13 C 1.34773 * 118.74813 * 138.19545 * 12 11 10 14 14 O 1.21286 * 120.00167 * 179.72824 * 13 12 11 15 15 C 1.50698 * 120.00083 * 359.73413 * 13 12 11 16 16 S 1.81001 * 109.47425 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00088 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99977 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99740 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47107 * 89.99703 * 21 19 17 23 23 H 1.48497 * 109.47186 * 209.99870 * 21 19 17 24 24 H 1.48501 * 109.47131 * 330.00148 * 21 19 17 25 25 C 1.44884 * 122.50411 * 317.91938 * 12 11 10 26 26 C 1.41442 * 111.00245 * 296.03464 * 8 7 6 27 27 H 1.08997 * 109.46847 * 269.82794 * 1 2 3 28 28 H 1.08988 * 109.47348 * 29.83594 * 1 2 3 29 29 H 1.09005 * 109.46709 * 149.83752 * 1 2 3 30 30 H 1.08000 * 126.78262 * 180.28212 * 5 4 3 31 31 H 1.09003 * 109.47465 * 337.51023 * 7 6 5 32 32 H 1.09001 * 109.47395 * 217.50590 * 7 6 5 33 33 H 1.08997 * 109.53545 * 264.65852 * 9 8 7 34 34 H 1.09003 * 109.53202 * 24.80775 * 9 8 7 35 35 H 1.08995 * 109.44716 * 212.45497 * 10 9 8 36 36 H 1.08999 * 109.44745 * 332.39680 * 10 9 8 37 37 H 1.08999 * 109.31347 * 199.77504 * 11 10 9 38 38 H 1.08998 * 109.12322 * 80.58750 * 11 10 9 39 39 H 1.09003 * 109.47159 * 59.99549 * 15 13 12 40 40 H 1.09004 * 109.46860 * 300.00122 * 15 13 12 41 41 H 0.96998 * 119.99481 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.43401 * 210.06925 * 25 12 11 43 43 H 1.09004 * 109.43479 * 329.94075 * 25 12 11 44 44 H 1.08999 * 109.38138 * 71.52969 * 26 8 7 45 45 H 1.08998 * 109.30332 * 311.78988 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5863 -0.0002 8 7 1.6500 -3.0094 1.3722 9 6 0.4460 -2.3438 1.8670 10 6 -0.3175 -3.2992 2.7572 11 6 0.1174 -3.1063 4.2237 12 7 1.5738 -2.8862 4.3213 13 6 2.0317 -1.9456 5.1710 14 8 3.2242 -1.7493 5.2729 15 6 1.0621 -1.1378 5.9946 16 16 1.9773 0.0322 7.0287 17 6 0.6374 0.8205 7.8582 18 1 -0.3788 0.5216 7.6478 19 6 0.8881 1.8255 8.7821 20 7 2.1267 2.1894 9.0390 21 14 -0.5323 2.6607 9.6621 22 1 -0.8385 1.9262 10.9158 23 1 -0.1587 4.0606 9.9871 24 1 -1.7290 2.6591 8.7828 25 6 2.5300 -3.6469 3.5428 26 6 2.7958 -2.9291 2.1977 27 1 -0.3633 -0.0031 1.0276 28 1 -0.3633 0.8913 -0.5112 29 1 -0.3633 -0.8886 -0.5164 30 1 4.5340 -1.1533 0.0092 31 1 2.7820 -3.1864 -0.3887 32 1 1.0800 -2.7244 -0.6296 33 1 0.7273 -1.4592 2.4383 34 1 -0.1800 -2.0496 1.0246 35 1 -1.3860 -3.1040 2.6668 36 1 -0.1089 -4.3247 2.4522 37 1 -0.1488 -3.9934 4.7984 38 1 -0.4025 -2.2434 4.6398 39 1 0.4804 -1.8059 6.6298 40 1 0.3911 -0.5905 5.3324 41 1 2.3018 2.8920 9.6844 42 1 3.4637 -3.7329 4.0987 43 1 2.1305 -4.6426 3.3499 44 1 3.0326 -1.8821 2.3870 45 1 3.6370 -3.4049 1.6937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194913215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:49 Heat of formation + Delta-G solvation = 18.206389 kcal Electronic energy + Delta-G solvation = -28221.943457 eV Core-core repulsion = 24368.576031 eV Total energy + Delta-G solvation = -3853.367426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.95254 -41.43706 -39.49543 -36.88243 -35.33022 -34.62518 -33.71221 -33.03409 -31.49662 -29.87438 -29.23390 -27.71577 -27.30127 -26.13937 -23.55697 -22.84801 -22.27215 -21.12773 -20.41253 -19.46200 -18.66514 -18.52266 -18.10428 -17.42696 -17.01494 -16.91806 -16.51067 -16.35762 -16.01661 -15.71779 -15.13210 -14.87048 -14.64342 -14.58199 -14.42098 -14.30510 -13.91428 -13.71775 -13.42949 -13.25532 -13.23519 -13.13717 -12.92456 -12.77044 -12.68394 -12.49268 -12.32731 -12.07291 -11.78232 -11.72813 -11.63028 -11.17613 -10.90201 -10.86796 -10.46307 -10.31015 -9.67982 -9.29735 -8.72289 -8.38260 -6.17399 0.53538 1.19735 1.22752 1.39694 1.43192 1.53598 1.54650 2.12861 2.24114 2.37914 2.95946 2.99099 3.21275 3.23988 3.56466 3.66378 3.82778 3.90558 3.98535 4.10777 4.15715 4.19826 4.26311 4.36637 4.38632 4.47301 4.51497 4.52964 4.66039 4.69021 4.74457 4.81164 4.84825 4.87310 4.90212 4.95250 5.04476 5.15469 5.23622 5.32083 5.37148 5.70657 6.11236 6.15615 6.19608 6.38146 7.02640 7.14409 7.29457 8.71221 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.003367 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.126106 B = 8313.441673 C = 9092.104181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 N -0.411 5.411 4 O 0.073 5.927 5 C -0.049 4.049 6 C -0.241 4.241 7 C 0.140 3.860 8 N -0.535 5.535 9 C 0.062 3.938 10 C -0.119 4.119 11 C 0.095 3.905 12 N -0.598 5.598 13 C 0.524 3.476 14 O -0.566 6.566 15 C -0.122 4.122 16 S -0.155 6.155 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.258 1.258 25 C 0.118 3.882 26 C 0.065 3.935 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.247 0.753 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.004 0.996 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.066 0.934 43 H 0.113 0.887 44 H -0.009 1.009 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -16.576 -22.703 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 N -0.120 5.120 4 O 0.012 5.988 5 C -0.131 4.131 6 C -0.246 4.246 7 C 0.013 3.987 8 N -0.257 5.257 9 C -0.065 4.065 10 C -0.157 4.157 11 C -0.027 4.027 12 N -0.332 5.332 13 C 0.312 3.688 14 O -0.444 6.444 15 C -0.273 4.273 16 S 0.072 5.928 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.005 4.005 26 C -0.065 4.065 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.023 0.977 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.009 0.991 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.279 -15.365 -22.467 27.726 hybrid contribution -1.195 1.030 0.947 1.840 sum -6.474 -14.335 -21.520 26.655 Atomic orbital electron populations 1.20460 0.84559 1.05002 1.03643 1.24107 1.00249 0.88697 1.01537 1.73862 0.90237 1.26181 1.21757 1.84771 1.21381 1.24839 1.67831 1.26638 1.02454 0.82822 1.01197 1.22573 0.91979 1.00381 1.09708 1.20806 1.03828 0.84277 0.89810 1.58941 1.05011 1.58998 1.02725 1.21839 0.91250 0.94453 0.98970 1.21919 1.00808 1.01795 0.91189 1.22439 0.77613 1.02907 0.99715 1.47856 1.08597 1.36286 1.40439 1.20187 0.88389 0.80298 0.79975 1.90667 1.18245 1.67787 1.67742 1.23370 1.01584 1.01108 1.01222 1.85586 1.14212 1.43202 1.49769 1.23173 0.93793 1.24242 1.28177 0.90015 1.26150 0.99633 0.96542 0.96761 1.70192 1.21299 1.29653 1.33675 0.84947 0.77399 0.77175 0.78434 1.18986 1.20283 1.18162 1.21638 0.92825 0.95671 0.90347 1.21598 0.93481 0.97466 0.93960 0.90344 0.90727 0.86834 0.73734 0.87000 0.87261 0.97741 0.88384 0.87755 0.88550 0.89516 0.90752 0.87571 0.88479 0.91963 0.91541 0.86872 0.99090 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 8.48 71.24 0.60 -0.71 16 2 C 0.01 0.31 6.99 43.58 0.30 0.62 16 3 N -0.41 -12.43 12.07 -49.56 -0.60 -13.03 16 4 O 0.07 2.01 11.20 71.63 0.80 2.81 16 5 C -0.05 -0.94 11.82 67.18 0.79 -0.15 16 6 C -0.24 -4.38 4.39 -19.73 -0.09 -4.47 16 7 C 0.14 1.56 5.60 85.56 0.48 2.03 16 8 N -0.53 -7.77 4.00 -916.21 -3.67 -11.44 16 9 C 0.06 0.99 3.42 85.87 0.29 1.28 16 10 C -0.12 -1.46 5.79 30.43 0.18 -1.28 16 11 C 0.09 1.77 6.03 86.57 0.52 2.29 16 12 N -0.60 -16.08 2.17 -817.15 -1.78 -17.86 16 13 C 0.52 20.53 7.65 87.66 0.67 21.20 16 14 O -0.57 -27.31 15.29 -3.05 -0.05 -27.35 16 15 C -0.12 -5.12 4.49 71.24 0.32 -4.80 16 16 S -0.15 -8.94 20.57 -56.49 -1.16 -10.11 16 17 C -0.55 -32.00 9.50 67.95 0.65 -31.35 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -57.27 13.22 21.65 0.29 -56.98 16 21 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 C 0.12 2.62 5.51 87.29 0.48 3.11 16 26 C 0.07 1.29 4.88 87.90 0.43 1.71 16 27 H 0.08 1.38 7.13 -2.39 -0.02 1.37 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 1.06 7.08 -2.38 -0.02 1.04 16 30 H 0.25 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.11 0.77 7.97 -2.39 -0.02 0.75 16 32 H 0.11 0.81 7.64 -2.39 -0.02 0.79 16 33 H 0.00 0.10 7.17 -2.39 -0.02 0.09 16 34 H 0.10 1.14 4.65 -2.39 -0.01 1.13 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.97 7.98 -2.39 -0.02 0.95 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.55 5.87 -2.39 -0.01 1.54 16 39 H 0.11 4.04 8.03 -2.39 -0.02 4.02 16 40 H 0.10 3.83 7.42 -2.39 -0.02 3.81 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.07 1.79 7.28 -2.39 -0.02 1.78 16 43 H 0.11 1.79 8.11 -2.38 -0.02 1.77 16 44 H -0.01 -0.27 7.21 -2.39 -0.02 -0.29 16 45 H 0.11 1.54 7.88 -2.39 -0.02 1.52 16 Total: -1.00 -86.04 369.45 2.97 -83.08 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.00 Total: 13.75 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 6.10 Total: -9.25 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -5.75 Total: -99.31 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.76 Total: -24.54 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.11 kcal Total: -86.04 2.97 -83.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194913215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.283 kcal (2) G-P(sol) polarization free energy of solvation -86.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds