Wall clock time and date at job start Tue Mar 31 2020 22:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34331 * 126.44428 * 2 1 4 4 N 1.34473 * 107.67086 * 179.77125 * 3 2 1 5 5 C 1.30251 * 108.69910 * 0.42430 * 4 3 2 6 6 C 1.50701 * 125.62094 * 179.83734 * 5 4 3 7 7 N 1.46904 * 109.47238 * 89.69251 * 6 5 4 8 8 C 1.46254 * 111.00199 * 190.00077 * 7 6 5 9 9 C 1.47541 * 114.37561 * 148.55920 * 8 7 6 10 10 C 1.54944 * 109.73560 * 62.21602 * 9 8 7 11 11 N 1.44679 * 109.52381 * 290.52352 * 10 9 8 12 12 C 1.34777 * 118.54455 * 269.08477 * 11 10 9 13 13 O 1.21278 * 119.99854 * 180.02562 * 12 11 10 14 14 C 1.50703 * 120.00161 * 359.97438 * 12 11 10 15 15 S 1.81002 * 109.47178 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00092 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99664 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47114 * 120.00091 * 20 18 16 23 23 H 1.48505 * 109.46890 * 239.99700 * 20 18 16 24 24 C 1.47775 * 122.90712 * 89.35537 * 11 10 9 25 25 C 1.44769 * 110.99517 * 66.50590 * 7 6 5 26 26 O 1.33972 * 108.76509 * 359.57549 * 5 4 3 27 27 H 1.08998 * 109.47197 * 269.96948 * 1 2 3 28 28 H 1.09001 * 109.47902 * 29.96973 * 1 2 3 29 29 H 1.09006 * 109.47431 * 149.97010 * 1 2 3 30 30 H 1.08005 * 126.15888 * 0.02929 * 3 2 1 31 31 H 1.08996 * 109.46983 * 329.69663 * 6 5 4 32 32 H 1.08996 * 109.47400 * 209.69848 * 6 5 4 33 33 H 1.09004 * 108.50327 * 27.29266 * 8 7 6 34 34 H 1.08999 * 108.38544 * 269.73774 * 8 7 6 35 35 H 1.09001 * 109.42972 * 302.13569 * 9 8 7 36 36 H 1.09000 * 109.38450 * 182.27302 * 9 8 7 37 37 H 1.09003 * 109.46668 * 170.50319 * 10 9 8 38 38 H 1.09001 * 109.45591 * 50.53619 * 10 9 8 39 39 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 40 40 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 41 41 H 0.97005 * 119.99806 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.06325 * 78.36874 * 24 11 10 43 43 H 1.08992 * 109.06660 * 197.30479 * 24 11 10 44 44 H 1.08999 * 109.43903 * 337.92381 * 25 7 6 45 45 H 1.08997 * 109.43414 * 97.84201 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 0.0051 5 6 3.5765 -0.6547 -0.0009 6 6 4.8004 -1.5339 -0.0016 7 7 5.1986 -1.8200 1.3831 8 6 6.5085 -2.4691 1.4284 9 6 7.3021 -2.1556 2.6320 10 6 6.5587 -2.6591 3.8948 11 7 5.3766 -1.8540 4.1131 12 6 5.4774 -0.7605 4.8944 13 8 4.5030 -0.0670 5.0955 14 6 6.8007 -0.4001 5.5191 15 16 6.6125 1.1070 6.5038 16 6 8.2607 1.2915 7.0988 17 1 9.0190 0.5747 6.8198 18 6 8.5848 2.3585 7.9251 19 7 7.6611 3.2329 8.2639 20 14 10.3324 2.5545 8.5553 21 1 11.1739 1.4480 8.0331 22 1 10.8818 3.8549 8.0946 23 1 10.3304 2.5160 10.0399 24 6 4.0622 -2.1809 3.5220 25 6 4.2035 -2.6314 2.0519 26 8 2.3074 -1.0840 -0.0006 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3635 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5143 30 1 1.9820 2.1113 0.0004 31 1 5.6145 -1.0229 -0.5156 32 1 4.5761 -2.4685 -0.5157 33 1 7.0767 -2.1631 0.5500 34 1 6.3593 -3.5479 1.3838 35 1 7.4451 -1.0772 2.7013 36 1 8.2730 -2.6462 2.5631 37 1 7.2171 -2.5796 4.7598 38 1 6.2682 -3.7002 3.7541 39 1 7.5390 -0.2324 4.7350 40 1 7.1327 -1.2150 6.1625 41 1 7.8876 3.9784 8.8417 42 1 3.6008 -2.9811 4.1006 43 1 3.4235 -1.2987 3.5643 44 1 3.2450 -2.5209 1.5449 45 1 4.5100 -3.6770 2.0245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194913592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:23 Heat of formation + Delta-G solvation = -21.295021 kcal Electronic energy + Delta-G solvation = -27612.089910 eV Core-core repulsion = 23757.009574 eV Total energy + Delta-G solvation = -3855.080336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.34546 -41.26814 -39.34005 -36.49381 -35.75564 -34.58195 -33.98065 -33.48480 -31.65588 -30.00970 -28.26444 -27.64360 -26.88711 -25.68117 -23.67792 -22.98493 -22.07694 -21.59616 -20.36766 -19.43451 -18.35881 -17.98687 -17.86047 -17.57629 -16.88210 -16.79542 -16.31058 -16.20005 -15.83164 -15.59219 -15.23661 -14.94880 -14.60297 -14.53375 -14.40200 -14.21592 -13.90886 -13.83294 -13.66407 -13.41836 -13.22462 -13.14634 -12.91825 -12.87308 -12.58200 -12.51826 -12.42098 -12.28848 -11.90108 -11.71394 -11.61460 -11.50866 -11.15235 -10.80242 -10.24456 -9.70175 -9.57843 -9.34051 -8.66974 -8.33798 -6.12430 0.39138 1.27043 1.41799 1.46850 1.57852 1.58765 1.65624 1.68127 2.17165 2.28344 2.87077 3.00120 3.09771 3.29867 3.73201 3.79529 3.89435 3.93164 3.98559 4.02692 4.09334 4.19656 4.25635 4.29921 4.42045 4.46346 4.49307 4.56275 4.60189 4.64061 4.65027 4.73056 4.79815 4.88873 4.96129 5.02229 5.04063 5.15973 5.31134 5.37220 5.41982 5.67179 5.97590 6.12651 6.20604 6.37697 6.75436 7.06901 7.23899 8.75965 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.002864 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.211973 B = 9774.588564 C =10630.588173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.044 4.044 3 C -0.075 4.075 4 N -0.505 5.505 5 C 0.183 3.817 6 C 0.163 3.837 7 N -0.559 5.559 8 C 0.064 3.936 9 C -0.137 4.137 10 C 0.102 3.898 11 N -0.585 5.585 12 C 0.527 3.473 13 O -0.576 6.576 14 C -0.116 4.116 15 S -0.161 6.161 16 C -0.541 4.541 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.913 5.913 20 Si 1.002 2.998 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.273 1.273 24 C 0.122 3.878 25 C 0.053 3.947 26 O -0.209 6.209 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.194 0.806 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -19.201 -21.368 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 C -0.212 4.212 4 N -0.234 5.234 5 C -0.024 4.024 6 C 0.035 3.965 7 N -0.285 5.285 8 C -0.062 4.062 9 C -0.176 4.176 10 C -0.021 4.021 11 N -0.318 5.318 12 C 0.314 3.686 13 O -0.455 6.455 14 C -0.267 4.267 15 S 0.066 5.934 16 C -0.689 4.689 17 H 0.101 0.899 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.823 3.177 21 H -0.178 1.178 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.001 4.001 25 C -0.076 4.076 26 O -0.097 6.097 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.211 0.789 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.236 -17.338 -20.781 28.289 hybrid contribution 1.028 -0.693 0.131 1.247 sum -7.208 -18.031 -20.650 28.346 Atomic orbital electron populations 1.20486 0.80867 1.06004 1.04790 1.24204 0.96590 0.83826 1.05049 1.23493 0.87722 1.01819 1.08204 1.70384 1.24483 1.10811 1.17730 1.26571 0.84752 0.90314 1.00790 1.20603 0.88771 0.96618 0.90481 1.60530 1.04026 1.49477 1.14454 1.21026 0.87934 0.97871 0.99341 1.21505 0.99872 1.01565 0.94659 1.21947 0.85571 0.95697 0.98862 1.47522 1.11253 1.25429 1.47566 1.20222 0.89122 0.80524 0.78701 1.90648 1.40395 1.52252 1.62219 1.23353 0.98244 1.02420 1.02725 1.85652 1.16941 1.29941 1.60825 1.23202 0.95105 1.15085 1.35493 0.89889 1.26177 1.03532 0.94158 0.95492 1.70211 1.35776 1.13952 1.35014 0.84870 0.76264 0.78656 0.77919 1.17797 1.20002 1.19828 1.21974 0.83769 1.00233 0.94096 1.22454 0.96063 0.96442 0.92641 1.84359 1.17990 1.37090 1.70213 0.89122 0.86910 0.88887 0.78938 0.86107 0.88515 0.89672 0.90991 0.93993 0.86718 0.90056 0.87298 0.88008 0.87464 0.92050 0.89928 0.93756 0.90569 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.43 71.24 0.74 0.00 16 2 C -0.04 -0.94 7.39 24.79 0.18 -0.76 16 3 C -0.07 -1.96 11.80 83.40 0.98 -0.98 16 4 N -0.50 -15.75 11.29 -303.82 -3.43 -19.19 16 5 C 0.18 4.61 7.05 88.34 0.62 5.23 16 6 C 0.16 2.81 5.40 85.56 0.46 3.27 16 7 N -0.56 -11.04 4.15 -915.74 -3.80 -14.84 16 8 C 0.06 0.87 4.97 84.72 0.42 1.29 16 9 C -0.14 -2.34 5.95 29.55 0.18 -2.16 16 10 C 0.10 1.97 5.22 87.38 0.46 2.43 16 11 N -0.59 -17.10 2.53 -816.44 -2.06 -19.17 16 12 C 0.53 22.01 7.65 87.66 0.67 22.68 16 13 O -0.58 -30.03 15.14 -3.02 -0.05 -30.07 16 14 C -0.12 -5.03 4.62 71.24 0.33 -4.70 16 15 S -0.16 -9.48 20.57 -56.49 -1.16 -10.64 16 16 C -0.54 -31.93 9.50 67.95 0.65 -31.29 16 17 H 0.08 4.54 7.80 -2.91 -0.02 4.51 16 18 C 0.01 0.63 5.49 84.86 0.47 1.10 16 19 N -0.91 -57.81 13.22 21.65 0.29 -57.52 16 20 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 21 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.12 3.19 6.49 86.61 0.56 3.75 16 25 C 0.05 0.95 5.25 87.18 0.46 1.41 16 26 O -0.21 -4.87 9.66 -3.78 -0.04 -4.90 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.12 1.93 7.75 -2.39 -0.02 1.91 16 32 H 0.10 0.99 8.11 -2.39 -0.02 0.97 16 33 H 0.08 0.92 7.44 -2.38 -0.02 0.90 16 34 H 0.07 0.56 7.17 -2.39 -0.02 0.54 16 35 H 0.04 1.06 7.42 -2.39 -0.02 1.04 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.65 6.18 -2.39 -0.01 1.63 16 38 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 39 H 0.10 4.11 7.27 -2.39 -0.02 4.09 16 40 H 0.11 4.14 7.30 -2.39 -0.02 4.12 16 41 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.04 1.56 6.96 -2.39 -0.02 1.55 16 44 H 0.08 1.43 5.91 -2.39 -0.01 1.41 16 45 H 0.09 0.95 7.13 -2.39 -0.02 0.93 16 Total: -1.00 -90.71 376.28 -0.05 -90.76 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.00 Total: 17.64 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 7.18 Total: 1.26 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -9.01 Total: -110.71 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.08 Total: -34.97 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.16 Total: -10.64 kcal Total: -90.71 -0.05 -90.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194913592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.464 kcal (2) G-P(sol) polarization free energy of solvation -90.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds