Wall clock time and date at job start Tue Mar 31 2020 22:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 128.01033 * 2 1 4 4 O 1.34044 * 106.44770 * 180.23851 * 3 2 1 5 5 N 1.20921 * 111.56829 * 359.74853 * 4 3 2 6 6 C 1.30178 * 111.60359 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80199 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46919 * 90.02850 * 7 6 5 9 9 C 1.46203 * 110.99965 * 64.99149 * 8 7 6 10 10 C 1.51271 * 109.10317 * 144.76950 * 9 8 7 11 11 C 1.54168 * 109.77405 * 92.30669 * 10 9 8 12 12 N 1.47618 * 111.09616 * 320.24181 * 11 10 9 13 13 C 1.34777 * 118.74495 * 138.20128 * 12 11 10 14 14 O 1.21278 * 119.99854 * 179.73911 * 13 12 11 15 15 C 1.50703 * 120.00161 * 359.73218 * 13 12 11 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47114 * 120.00091 * 21 19 17 24 24 H 1.48505 * 109.46890 * 239.99700 * 21 19 17 25 25 C 1.44879 * 122.50546 * 317.92025 * 12 11 10 26 26 C 1.41443 * 111.00268 * 293.95239 * 8 7 6 27 27 H 1.09003 * 109.46815 * 270.16445 * 1 2 3 28 28 H 1.08994 * 109.47114 * 30.16432 * 1 2 3 29 29 H 1.08999 * 109.47261 * 150.16339 * 1 2 3 30 30 H 1.07999 * 126.77422 * 359.96391 * 3 2 1 31 31 H 1.09001 * 109.46988 * 330.02549 * 7 6 5 32 32 H 1.09002 * 109.46907 * 210.03061 * 7 6 5 33 33 H 1.08995 * 109.53063 * 264.65937 * 9 8 7 34 34 H 1.09003 * 109.53330 * 24.80810 * 9 8 7 35 35 H 1.08997 * 109.44452 * 212.45125 * 10 9 8 36 36 H 1.09001 * 109.44506 * 332.38887 * 10 9 8 37 37 H 1.09003 * 109.31613 * 199.77649 * 11 10 9 38 38 H 1.09001 * 109.12489 * 80.59061 * 11 10 9 39 39 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 40 40 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 41 41 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.43848 * 210.06919 * 25 12 11 43 43 H 1.09001 * 109.43846 * 329.98716 * 25 12 11 44 44 H 1.09000 * 109.38054 * 71.52677 * 26 8 7 45 45 H 1.08999 * 109.38230 * 311.84810 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 -0.0054 5 7 3.5879 -0.6346 -0.0035 6 6 2.3776 -1.1140 0.0037 7 6 1.9827 -2.5684 0.0075 8 7 1.8613 -3.0392 1.3936 9 6 0.7679 -2.3577 2.0846 10 6 0.1072 -3.3255 3.0412 11 6 0.7581 -3.2086 4.4338 12 7 2.2204 -3.0387 4.3243 13 6 2.8320 -2.1497 5.1319 14 8 4.0330 -1.9954 5.0645 15 6 2.0234 -1.3475 6.1187 16 16 3.1223 -0.2506 7.0489 17 6 1.9482 0.5423 8.0965 18 1 0.9019 0.2836 8.0278 19 6 2.3682 1.4984 9.0107 20 7 3.6436 1.8126 9.0954 21 14 1.1235 2.3385 10.1218 22 1 -0.2340 1.8113 9.8317 23 1 1.4666 2.0698 11.5414 24 1 1.1486 3.8027 9.8751 25 6 3.0240 -3.7954 3.3859 26 6 3.1174 -3.0299 2.0440 27 1 -0.3633 0.0029 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 2.0577 2.1094 -0.0005 31 1 2.7437 -3.1529 -0.5095 32 1 1.0260 -2.6864 -0.5015 33 1 1.1622 -1.5073 2.6409 34 1 0.0371 -2.0086 1.3550 35 1 -0.9550 -3.0932 3.1164 36 1 0.2308 -4.3432 2.6708 37 1 0.5457 -4.1104 5.0080 38 1 0.3368 -2.3482 4.9538 39 1 1.5161 -2.0232 6.8073 40 1 1.2840 -0.7518 5.5834 41 1 3.9371 2.4812 9.7341 42 1 4.0248 -3.9342 3.7947 43 1 2.5633 -4.7686 3.2162 44 1 3.4181 -1.9998 2.2352 45 1 3.8591 -3.5090 1.4049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194918834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:59 Heat of formation + Delta-G solvation = 41.792730 kcal Electronic energy + Delta-G solvation = -28164.157368 eV Core-core repulsion = 24311.812722 eV Total energy + Delta-G solvation = -3852.344646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.06935 -40.26266 -38.34041 -35.78409 -34.43029 -32.82439 -32.43453 -32.29341 -30.28178 -28.54421 -28.18152 -26.52547 -25.59597 -25.20219 -22.45093 -21.84397 -21.66689 -20.31266 -18.93091 -17.84831 -17.70779 -17.57896 -16.65907 -16.23714 -15.89228 -15.71651 -15.11915 -14.91807 -14.81413 -14.45250 -13.99674 -13.82645 -13.55418 -13.46556 -13.43534 -13.07856 -12.74251 -12.58157 -12.51488 -12.35733 -12.12565 -11.70352 -11.56415 -11.48262 -11.24611 -11.08499 -11.05635 -10.99847 -10.94737 -10.75351 -10.12209 -9.79205 -9.52881 -9.31157 -9.08114 -8.59351 -8.41647 -8.21131 -6.50325 -6.22140 -3.92670 1.36840 1.99838 2.98263 3.07984 3.13542 3.20316 3.25746 3.30237 3.61079 3.72083 3.97100 4.19455 4.27758 4.61223 4.63179 4.75452 4.83078 4.90926 5.00283 5.06059 5.12905 5.16319 5.23482 5.31213 5.38434 5.41281 5.46437 5.48776 5.50591 5.52105 5.55471 5.62594 5.73497 5.77849 5.86502 5.88982 5.92508 6.03185 6.05382 6.11619 6.76460 6.87836 7.12110 7.56127 7.59139 8.13374 8.34579 8.60453 9.23057 10.85333 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.003333 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.977370 B = 8398.905649 C = 9157.695304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.199 4.199 3 C -0.061 4.061 4 O 0.103 5.897 5 N -0.351 5.351 6 C -0.021 4.021 7 C 0.141 3.859 8 N -0.542 5.542 9 C 0.066 3.934 10 C -0.130 4.130 11 C 0.106 3.894 12 N -0.616 5.616 13 C 0.527 3.473 14 O -0.515 6.515 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.124 3.876 26 C 0.055 3.945 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.214 0.786 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.268 0.732 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 -8.723 -20.701 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.204 4.204 3 C -0.142 4.142 4 O 0.036 5.964 5 N -0.054 5.054 6 C -0.182 4.182 7 C 0.012 3.988 8 N -0.266 5.266 9 C -0.061 4.061 10 C -0.168 4.168 11 C -0.017 4.017 12 N -0.352 5.352 13 C 0.314 3.686 14 O -0.389 6.389 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.000 4.000 26 C -0.075 4.075 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.735 -9.419 -20.699 24.021 hybrid contribution -2.795 1.550 0.884 3.316 sum -10.530 -7.869 -19.815 23.779 Atomic orbital electron populations 1.20177 0.87536 1.03011 1.02805 1.21310 0.98573 0.91695 1.08779 1.25811 0.83216 1.01268 1.03899 1.84838 1.29115 1.15642 1.66836 1.73893 1.22418 0.91338 1.17767 1.24542 0.88833 1.00327 1.04518 1.20667 1.02409 0.84810 0.90909 1.58847 1.07679 1.57906 1.02137 1.21662 0.92533 0.95382 0.96486 1.21922 0.99249 1.01396 0.94263 1.22081 0.79599 1.02580 0.97402 1.47841 1.07500 1.41504 1.38360 1.20413 0.88244 0.79224 0.80672 1.90697 1.14656 1.64944 1.68572 1.23563 1.03823 1.02313 1.00309 1.85438 1.10354 1.44879 1.42869 1.22892 0.95216 1.26574 1.23570 0.90962 1.24987 0.95842 0.96006 0.96719 1.70032 1.14116 1.31064 1.35025 0.86130 0.80543 0.79036 0.79865 1.19618 1.20528 1.20572 1.21424 0.96882 0.94185 0.87558 1.21728 0.89636 1.00352 0.95750 0.90635 0.90972 0.91029 0.76902 0.89146 0.88652 0.93699 0.90650 0.90263 0.90111 0.91684 0.89771 0.89352 0.89612 0.92241 0.89374 0.90210 0.94571 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 8.76 36.01 0.32 -0.20 16 2 C -0.20 -1.96 5.97 -104.42 -0.62 -2.59 16 3 C -0.06 -0.60 12.26 29.74 0.36 -0.24 16 4 O 0.10 1.35 11.20 17.17 0.19 1.54 16 5 N -0.35 -4.95 11.72 33.43 0.39 -4.56 16 6 C -0.02 -0.24 5.29 -82.09 -0.43 -0.68 16 7 C 0.14 1.32 5.60 -4.98 -0.03 1.29 16 8 N -0.54 -5.67 4.00 -240.94 -0.96 -6.63 16 9 C 0.07 0.67 4.21 -5.07 -0.02 0.64 16 10 C -0.13 -1.12 5.79 -26.99 -0.16 -1.27 16 11 C 0.11 1.18 6.03 -2.82 -0.02 1.17 16 12 N -0.62 -9.08 2.17 -172.22 -0.37 -9.46 16 13 C 0.53 10.40 7.65 -10.98 -0.08 10.32 16 14 O -0.51 -12.25 15.29 5.56 0.09 -12.16 16 15 C -0.15 -3.12 4.49 36.01 0.16 -2.95 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 17 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.12 1.64 5.51 -3.98 -0.02 1.62 16 26 C 0.06 0.72 4.97 -5.74 -0.03 0.69 16 27 H 0.08 0.52 7.53 -51.93 -0.39 0.13 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 7.46 -51.93 -0.39 0.00 16 30 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.09 0.83 7.92 -51.93 -0.41 0.41 16 32 H 0.10 0.68 7.44 -51.93 -0.39 0.29 16 33 H 0.04 0.60 7.33 -51.93 -0.38 0.22 16 34 H 0.08 0.61 5.03 -51.93 -0.26 0.35 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.67 7.98 -51.93 -0.41 0.26 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.98 5.87 -51.93 -0.30 0.67 16 39 H 0.09 1.71 8.03 -51.92 -0.42 1.29 16 40 H 0.09 1.67 7.42 -51.91 -0.39 1.28 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.33 7.28 -51.93 -0.38 0.95 16 43 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 44 H 0.04 0.62 7.29 -51.93 -0.38 0.24 16 45 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -36.24 371.70 -8.50 -44.74 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.56 Total: -0.74 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.37 Total: -5.19 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.21 Total: -46.24 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.28 Total: -10.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.24 -8.50 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194918834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.534 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds