Wall clock time and date at job start Tue Mar 31 2020 22:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 128.01033 * 2 1 4 4 O 1.34044 * 106.44770 * 180.23851 * 3 2 1 5 5 N 1.20921 * 111.56829 * 359.74853 * 4 3 2 6 6 C 1.30178 * 111.60359 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80199 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46919 * 90.02850 * 7 6 5 9 9 C 1.46203 * 110.99965 * 64.99149 * 8 7 6 10 10 C 1.51271 * 109.10317 * 144.76950 * 9 8 7 11 11 C 1.54168 * 109.77405 * 92.30669 * 10 9 8 12 12 N 1.47618 * 111.09616 * 320.24181 * 11 10 9 13 13 C 1.34777 * 118.74495 * 138.20128 * 12 11 10 14 14 O 1.21278 * 119.99854 * 179.73911 * 13 12 11 15 15 C 1.50703 * 120.00161 * 359.73218 * 13 12 11 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47114 * 120.00091 * 21 19 17 24 24 H 1.48505 * 109.46890 * 239.99700 * 21 19 17 25 25 C 1.44879 * 122.50546 * 317.92025 * 12 11 10 26 26 C 1.41443 * 111.00268 * 293.95239 * 8 7 6 27 27 H 1.09003 * 109.46815 * 270.16445 * 1 2 3 28 28 H 1.08994 * 109.47114 * 30.16432 * 1 2 3 29 29 H 1.08999 * 109.47261 * 150.16339 * 1 2 3 30 30 H 1.07999 * 126.77422 * 359.96391 * 3 2 1 31 31 H 1.09001 * 109.46988 * 330.02549 * 7 6 5 32 32 H 1.09002 * 109.46907 * 210.03061 * 7 6 5 33 33 H 1.08995 * 109.53063 * 264.65937 * 9 8 7 34 34 H 1.09003 * 109.53330 * 24.80810 * 9 8 7 35 35 H 1.08997 * 109.44452 * 212.45125 * 10 9 8 36 36 H 1.09001 * 109.44506 * 332.38887 * 10 9 8 37 37 H 1.09003 * 109.31613 * 199.77649 * 11 10 9 38 38 H 1.09001 * 109.12489 * 80.59061 * 11 10 9 39 39 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 40 40 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 41 41 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.43848 * 210.06919 * 25 12 11 43 43 H 1.09001 * 109.43846 * 329.98716 * 25 12 11 44 44 H 1.09000 * 109.38054 * 71.52677 * 26 8 7 45 45 H 1.08999 * 109.38230 * 311.84810 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 -0.0054 5 7 3.5879 -0.6346 -0.0035 6 6 2.3776 -1.1140 0.0037 7 6 1.9827 -2.5684 0.0075 8 7 1.8613 -3.0392 1.3936 9 6 0.7679 -2.3577 2.0846 10 6 0.1072 -3.3255 3.0412 11 6 0.7581 -3.2086 4.4338 12 7 2.2204 -3.0387 4.3243 13 6 2.8320 -2.1497 5.1319 14 8 4.0330 -1.9954 5.0645 15 6 2.0234 -1.3475 6.1187 16 16 3.1223 -0.2506 7.0489 17 6 1.9482 0.5423 8.0965 18 1 0.9019 0.2836 8.0278 19 6 2.3682 1.4984 9.0107 20 7 3.6436 1.8126 9.0954 21 14 1.1235 2.3385 10.1218 22 1 -0.2340 1.8113 9.8317 23 1 1.4666 2.0698 11.5414 24 1 1.1486 3.8027 9.8751 25 6 3.0240 -3.7954 3.3859 26 6 3.1174 -3.0299 2.0440 27 1 -0.3633 0.0029 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 2.0577 2.1094 -0.0005 31 1 2.7437 -3.1529 -0.5095 32 1 1.0260 -2.6864 -0.5015 33 1 1.1622 -1.5073 2.6409 34 1 0.0371 -2.0086 1.3550 35 1 -0.9550 -3.0932 3.1164 36 1 0.2308 -4.3432 2.6708 37 1 0.5457 -4.1104 5.0080 38 1 0.3368 -2.3482 4.9538 39 1 1.5161 -2.0232 6.8073 40 1 1.2840 -0.7518 5.5834 41 1 3.9371 2.4812 9.7341 42 1 4.0248 -3.9342 3.7947 43 1 2.5633 -4.7686 3.2162 44 1 3.4181 -1.9998 2.2352 45 1 3.8591 -3.5090 1.4049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194918834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:58 Heat of formation + Delta-G solvation = 16.651681 kcal Electronic energy + Delta-G solvation = -28165.247565 eV Core-core repulsion = 24311.812722 eV Total energy + Delta-G solvation = -3853.434844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.93911 -41.47950 -39.52659 -36.91016 -35.31474 -34.61222 -33.76969 -33.18926 -31.65632 -29.56649 -29.03516 -27.72010 -27.43770 -26.26881 -23.57215 -22.73660 -22.48771 -21.16135 -20.43681 -19.48046 -18.67503 -18.56604 -18.11114 -17.45175 -17.03566 -16.90623 -16.59830 -16.29098 -16.04377 -15.70427 -15.29892 -14.93863 -14.66692 -14.55146 -14.23450 -14.17261 -13.97081 -13.73340 -13.51118 -13.30871 -13.19192 -13.05388 -12.94103 -12.84820 -12.68989 -12.50260 -12.40012 -12.06946 -11.83775 -11.78277 -11.69861 -11.18097 -11.01472 -10.89854 -10.29522 -10.28877 -9.73191 -9.45721 -8.71818 -8.36758 -6.16382 0.54605 1.19640 1.23367 1.40320 1.44342 1.52193 1.56182 2.09809 2.24999 2.39232 2.85542 2.97597 3.20085 3.22644 3.52930 3.65187 3.78854 3.91002 3.99796 4.08583 4.10766 4.17907 4.23076 4.30342 4.35318 4.41642 4.53012 4.60490 4.62296 4.69376 4.74555 4.76910 4.82731 4.86568 4.88900 4.96470 4.98120 5.11851 5.28076 5.34159 5.39059 5.65558 5.98262 6.11010 6.17634 6.30137 7.04102 7.11841 7.28271 8.72974 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.003333 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.977370 B = 8398.905649 C = 9157.695304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.203 4.203 3 C -0.069 4.069 4 O 0.072 5.928 5 N -0.395 5.395 6 C -0.026 4.026 7 C 0.138 3.862 8 N -0.530 5.530 9 C 0.065 3.935 10 C -0.119 4.119 11 C 0.094 3.906 12 N -0.599 5.599 13 C 0.523 3.477 14 O -0.569 6.569 15 C -0.119 4.119 16 S -0.158 6.158 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.123 3.877 26 C 0.070 3.930 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.006 0.994 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.271 0.729 42 H 0.063 0.937 43 H 0.116 0.884 44 H -0.013 1.013 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 -9.879 -21.545 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.207 4.207 3 C -0.150 4.150 4 O 0.009 5.991 5 N -0.102 5.102 6 C -0.187 4.187 7 C 0.010 3.990 8 N -0.253 5.253 9 C -0.062 4.062 10 C -0.157 4.157 11 C -0.027 4.027 12 N -0.333 5.333 13 C 0.310 3.690 14 O -0.447 6.447 15 C -0.270 4.270 16 S 0.069 5.931 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.177 1.177 23 H -0.199 1.199 24 H -0.199 1.199 25 C 0.000 4.000 26 C -0.061 4.061 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.263 0.737 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.025 0.975 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.006 0.994 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.355 -10.591 -21.581 27.029 hybrid contribution -1.411 1.836 1.032 2.535 sum -13.766 -8.756 -20.550 26.238 Atomic orbital electron populations 1.20303 0.84864 1.04896 1.03261 1.21795 1.00249 0.90761 1.07941 1.26594 0.82284 1.03067 1.03048 1.84772 1.30891 1.15623 1.67768 1.73881 1.24357 0.91955 1.20045 1.25049 0.88582 1.01795 1.03271 1.20915 1.04176 0.83472 0.90402 1.58947 1.06354 1.57543 1.02441 1.21774 0.92636 0.94556 0.97195 1.21925 1.00406 1.01663 0.91686 1.22482 0.76839 1.03484 0.99889 1.47873 1.09342 1.39396 1.36675 1.20306 0.87480 0.79970 0.81227 1.90678 1.16796 1.66921 1.70343 1.23354 1.02271 1.01315 1.00074 1.85679 1.14785 1.47673 1.44953 1.23204 0.95387 1.26847 1.23668 0.89826 1.26164 0.98080 0.96578 0.98322 1.70205 1.16699 1.31928 1.36106 0.84881 0.78039 0.77679 0.77193 1.17731 1.19900 1.19882 1.21540 0.96009 0.95446 0.87012 1.21499 0.91243 0.97407 0.95920 0.90645 0.89224 0.89138 0.73699 0.89103 0.85265 0.97525 0.87947 0.87057 0.88711 0.89337 0.90214 0.87398 0.87999 0.91991 0.91816 0.86577 0.99446 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 8.76 71.24 0.62 -0.15 16 2 C -0.20 -3.76 5.97 -19.73 -0.12 -3.88 16 3 C -0.07 -1.38 12.26 67.18 0.82 -0.56 16 4 O 0.07 2.03 11.20 71.59 0.80 2.83 16 5 N -0.39 -11.77 11.72 -49.54 -0.58 -12.35 16 6 C -0.03 -0.59 5.29 43.58 0.23 -0.36 16 7 C 0.14 2.33 5.60 85.56 0.48 2.81 16 8 N -0.53 -9.98 4.00 -916.20 -3.67 -13.64 16 9 C 0.07 1.12 4.21 85.87 0.36 1.48 16 10 C -0.12 -1.51 5.79 30.42 0.18 -1.33 16 11 C 0.09 1.80 6.03 86.56 0.52 2.32 16 12 N -0.60 -17.18 2.17 -817.16 -1.78 -18.95 16 13 C 0.52 21.17 7.65 87.66 0.67 21.84 16 14 O -0.57 -28.78 15.29 -3.02 -0.05 -28.82 16 15 C -0.12 -4.99 4.49 71.24 0.32 -4.67 16 16 S -0.16 -9.11 20.57 -56.49 -1.16 -10.27 16 17 C -0.54 -31.40 9.50 67.95 0.65 -30.76 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 21 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 22 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.12 3.21 5.51 87.29 0.48 3.69 16 26 C 0.07 1.83 4.97 87.90 0.44 2.27 16 27 H 0.07 0.80 7.53 -2.39 -0.02 0.78 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.58 7.46 -2.39 -0.02 0.56 16 30 H 0.25 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.09 1.53 7.92 -2.39 -0.02 1.51 16 32 H 0.13 1.30 7.44 -2.39 -0.02 1.28 16 33 H 0.01 0.16 7.33 -2.39 -0.02 0.15 16 34 H 0.10 1.21 5.03 -2.39 -0.01 1.20 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.04 7.98 -2.39 -0.02 1.03 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.62 5.87 -2.39 -0.01 1.61 16 39 H 0.11 4.07 8.03 -2.39 -0.02 4.05 16 40 H 0.10 3.91 7.42 -2.39 -0.02 3.90 16 41 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 42 H 0.06 2.00 7.28 -2.39 -0.02 1.98 16 43 H 0.12 2.21 8.11 -2.39 -0.02 2.19 16 44 H -0.01 -0.47 7.29 -2.39 -0.02 -0.48 16 45 H 0.09 2.14 7.85 -2.39 -0.02 2.12 16 Total: -1.00 -85.90 371.70 3.00 -82.90 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.00 Total: 15.36 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.12 Total: -6.07 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.74 Total: -101.56 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.76 Total: -25.99 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.16 Total: -10.27 kcal Total: -85.90 3.00 -82.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194918834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.548 kcal (2) G-P(sol) polarization free energy of solvation -85.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds