Wall clock time and date at job start Tue Mar 31 2020 22:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34039 * 126.77900 * 2 1 4 4 N 1.20924 * 111.56806 * 180.02562 * 3 2 1 5 5 C 1.30170 * 111.60287 * 359.74710 * 4 3 2 6 6 C 1.35449 * 126.77620 * 180.02562 * 2 1 3 7 7 C 1.50699 * 128.00816 * 359.95951 * 6 2 1 8 8 N 1.46901 * 109.47302 * 84.26003 * 7 6 2 9 9 C 1.46198 * 111.00218 * 58.92120 * 8 7 6 10 10 C 1.51275 * 109.10276 * 144.77099 * 9 8 7 11 11 C 1.54177 * 109.77084 * 92.31345 * 10 9 8 12 12 N 1.47615 * 111.09390 * 320.24147 * 11 10 9 13 13 C 1.34781 * 118.74387 * 138.20523 * 12 11 10 14 14 O 1.21280 * 119.99776 * 179.73836 * 13 12 11 15 15 C 1.50695 * 120.00032 * 359.72929 * 13 12 11 16 16 S 1.80998 * 109.47055 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99981 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00253 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00173 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99938 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47018 * 90.00195 * 21 19 17 23 23 H 1.48497 * 109.47190 * 210.00487 * 21 19 17 24 24 H 1.48503 * 109.47473 * 330.00481 * 21 19 17 25 25 C 1.44884 * 122.50781 * 317.92356 * 12 11 10 26 26 C 1.41448 * 110.99917 * 287.88971 * 8 7 6 27 27 H 1.08997 * 109.47180 * 275.46478 * 1 2 3 28 28 H 1.09000 * 109.47431 * 35.46042 * 1 2 3 29 29 H 1.08999 * 109.47187 * 155.46304 * 1 2 3 30 30 H 1.07995 * 126.79840 * 180.25034 * 5 4 3 31 31 H 1.09002 * 109.47187 * 324.25828 * 7 6 2 32 32 H 1.08999 * 109.47362 * 204.26027 * 7 6 2 33 33 H 1.08996 * 109.53457 * 264.66358 * 9 8 7 34 34 H 1.09003 * 109.52722 * 24.81800 * 9 8 7 35 35 H 1.08991 * 109.44763 * 212.45753 * 10 9 8 36 36 H 1.08992 * 109.44364 * 332.39978 * 10 9 8 37 37 H 1.09005 * 109.30927 * 199.77525 * 11 10 9 38 38 H 1.08998 * 109.12413 * 80.58959 * 11 10 9 39 39 H 1.09002 * 109.47045 * 60.00208 * 15 13 12 40 40 H 1.09000 * 109.47077 * 300.00649 * 15 13 12 41 41 H 0.97001 * 120.00456 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.43420 * 210.07015 * 25 12 11 43 43 H 1.09001 * 109.43484 * 329.94187 * 25 12 11 44 44 H 1.09003 * 109.38546 * 71.52524 * 26 8 7 45 45 H 1.08994 * 109.30165 * 311.79378 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5391 -0.0003 8 7 1.6594 -2.9752 -1.3782 9 6 2.8394 -2.7889 -2.2210 10 6 2.9100 -3.9141 -3.2296 11 6 2.1952 -3.4947 -4.5297 12 7 0.9631 -2.7360 -4.2376 13 6 0.6793 -1.6491 -4.9823 14 8 -0.3294 -1.0118 -4.7651 15 6 1.6154 -1.2257 -6.0848 16 16 0.9636 0.2565 -6.8937 17 6 2.2172 0.5213 -8.1032 18 1 3.0605 -0.1507 -8.1629 19 6 2.1203 1.5930 -8.9800 20 7 1.0922 2.4117 -8.9075 21 14 3.4497 1.8742 -10.2618 22 1 3.0991 1.1446 -11.5067 23 1 3.5575 3.3264 -10.5527 24 1 4.7493 1.3751 -9.7449 25 6 0.0443 -3.1186 -3.1847 26 6 0.4494 -2.4250 -1.8619 27 1 -0.3633 0.0979 1.0230 28 1 -0.3634 0.8370 -0.5962 29 1 -0.3633 -0.9348 -0.4268 30 1 4.5527 -1.0839 0.0090 31 1 1.0224 -2.6708 0.6005 32 1 2.7313 -3.1356 0.4215 33 1 2.7671 -1.8351 -2.7435 34 1 3.7354 -2.7977 -1.6004 35 1 3.9535 -4.1421 -3.4465 36 1 2.4226 -4.7991 -2.8207 37 1 1.9384 -4.3854 -5.1033 38 1 2.8662 -2.8718 -5.1212 39 1 1.7035 -2.0298 -6.8154 40 1 2.5971 -1.0078 -5.6642 41 1 1.0243 3.1605 -9.5205 42 1 -0.9667 -2.8164 -3.4581 43 1 0.0754 -4.2000 -3.0515 44 1 0.5826 -1.3577 -2.0390 45 1 -0.3356 -2.5733 -1.1204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194919334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:31 Heat of formation + Delta-G solvation = 45.735153 kcal Electronic energy + Delta-G solvation = -28231.966578 eV Core-core repulsion = 24379.792888 eV Total energy + Delta-G solvation = -3852.173690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.06804 -40.32912 -38.40804 -35.76546 -33.77759 -33.39826 -32.64894 -32.42873 -30.42541 -28.88790 -27.32556 -26.67501 -25.53827 -25.09697 -23.00390 -22.19312 -21.56246 -20.04763 -18.95958 -17.84313 -17.66787 -17.31534 -16.70453 -16.30661 -16.00506 -15.69469 -15.25350 -14.87817 -14.80572 -14.34557 -14.08798 -13.84371 -13.75776 -13.46224 -13.25395 -13.15045 -12.73933 -12.64906 -12.53909 -12.28665 -12.19012 -11.74368 -11.51780 -11.46915 -11.22804 -11.07411 -11.03728 -11.02259 -10.99016 -10.75201 -10.45726 -9.80206 -9.39378 -9.33986 -9.06766 -8.59906 -8.40552 -8.22843 -6.50390 -6.21846 -3.92394 1.30918 2.06418 2.95424 2.95996 3.04226 3.22046 3.26122 3.30229 3.59619 3.71659 4.11839 4.20079 4.40327 4.51578 4.60746 4.73461 4.80483 4.88001 4.93849 5.05118 5.13451 5.17123 5.20693 5.22061 5.32660 5.40469 5.41237 5.43251 5.47360 5.55224 5.56367 5.68060 5.72404 5.77940 5.79683 5.85559 5.90978 5.97495 6.02281 6.11491 6.73785 6.85518 7.10210 7.52027 7.59253 8.11901 8.34798 8.56208 9.23516 10.85629 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003349 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.376698 B = 8358.816005 C = 9130.984543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.013 4.013 3 O 0.097 5.903 4 N -0.364 5.364 5 C -0.001 4.001 6 C -0.246 4.246 7 C 0.141 3.859 8 N -0.547 5.547 9 C 0.074 3.926 10 C -0.129 4.129 11 C 0.106 3.894 12 N -0.616 5.616 13 C 0.529 3.471 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.122 3.878 26 C 0.048 3.952 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.186 0.814 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.268 0.732 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -14.932 19.868 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 O 0.032 5.968 4 N -0.067 5.067 5 C -0.180 4.180 6 C -0.252 4.252 7 C 0.013 3.987 8 N -0.270 5.270 9 C -0.053 4.053 10 C -0.168 4.168 11 C -0.017 4.017 12 N -0.351 5.351 13 C 0.316 3.684 14 O -0.390 6.390 15 C -0.302 4.302 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.082 4.082 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.203 0.797 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.934 -13.257 20.087 24.085 hybrid contribution 2.110 -0.449 -1.174 2.456 sum 3.045 -13.705 18.913 23.554 Atomic orbital electron populations 1.20688 0.84135 1.05823 1.04083 1.24396 0.96305 0.85863 1.01218 1.84833 1.11408 1.33238 1.67292 1.73897 0.97202 1.16885 1.18733 1.24880 0.99502 0.90361 1.03286 1.22019 0.92457 0.99172 1.11528 1.20529 1.01954 0.85986 0.90275 1.58851 1.03775 1.62010 1.02351 1.21460 0.91454 0.97953 0.94470 1.21917 1.00727 0.99416 0.94721 1.22086 0.85878 0.96496 0.97212 1.47830 1.23747 1.28959 1.34610 1.20397 0.86451 0.79407 0.82107 1.90680 1.26967 1.52422 1.68944 1.23570 1.01527 1.06018 0.99036 1.85371 1.32786 1.26127 1.39177 1.22851 1.09763 1.16079 1.19640 0.91019 1.24980 0.96396 0.94862 0.97256 1.70012 1.28584 1.14932 1.36738 0.86183 0.80999 0.77634 0.80788 1.20230 1.20723 1.19706 1.21446 0.93928 0.99402 0.85469 1.22006 0.91205 0.97810 0.97199 0.89422 0.89242 0.88346 0.79666 0.89590 0.89371 0.93720 0.91228 0.90358 0.90126 0.91679 0.89781 0.89355 0.89597 0.92182 0.89338 0.90217 0.94156 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.67 36.00 0.35 -0.39 16 2 C -0.01 -0.15 6.83 -35.31 -0.24 -0.39 16 3 O 0.10 1.35 11.20 17.18 0.19 1.54 16 4 N -0.36 -5.15 12.07 30.35 0.37 -4.78 16 5 C 0.00 -0.01 11.56 -17.06 -0.20 -0.21 16 6 C -0.25 -2.46 4.50 -104.42 -0.47 -2.93 16 7 C 0.14 1.06 5.42 -4.98 -0.03 1.03 16 8 N -0.55 -4.87 4.00 -240.94 -0.96 -5.84 16 9 C 0.07 0.72 4.33 -5.08 -0.02 0.70 16 10 C -0.13 -1.09 5.79 -26.99 -0.16 -1.25 16 11 C 0.11 1.14 6.03 -2.82 -0.02 1.13 16 12 N -0.62 -8.46 2.17 -172.21 -0.37 -8.83 16 13 C 0.53 9.94 7.65 -10.99 -0.08 9.86 16 14 O -0.52 -11.50 15.29 5.56 0.08 -11.41 16 15 C -0.15 -3.10 4.49 36.00 0.16 -2.94 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.12 1.40 5.51 -3.98 -0.02 1.38 16 26 C 0.05 0.49 3.66 -5.74 -0.02 0.46 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.74 4.32 -51.93 -0.22 0.52 16 30 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 32 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.04 0.60 7.33 -51.93 -0.38 0.22 16 34 H 0.07 0.59 7.20 -51.93 -0.37 0.22 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.98 5.87 -51.93 -0.30 0.67 16 39 H 0.09 1.69 8.03 -51.92 -0.42 1.27 16 40 H 0.09 1.68 7.42 -51.92 -0.39 1.29 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 1.14 7.28 -51.93 -0.38 0.76 16 43 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.04 0.54 6.05 -51.93 -0.31 0.23 16 45 H 0.08 0.66 6.51 -51.93 -0.34 0.32 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -35.57 368.55 -8.63 -44.20 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.43 Total: -0.90 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.55 Total: -6.59 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.24 Total: -45.07 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.28 Total: -9.87 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.57 -8.63 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.936 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds