Wall clock time and date at job start Tue Mar 31 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34039 * 126.77900 * 2 1 4 4 N 1.20924 * 111.56806 * 180.02562 * 3 2 1 5 5 C 1.30170 * 111.60287 * 359.74710 * 4 3 2 6 6 C 1.35449 * 126.77620 * 180.02562 * 2 1 3 7 7 C 1.50699 * 128.00816 * 359.95951 * 6 2 1 8 8 N 1.46901 * 109.47302 * 84.26003 * 7 6 2 9 9 C 1.46198 * 111.00218 * 58.92120 * 8 7 6 10 10 C 1.51275 * 109.10276 * 144.77099 * 9 8 7 11 11 C 1.54177 * 109.77084 * 92.31345 * 10 9 8 12 12 N 1.47615 * 111.09390 * 320.24147 * 11 10 9 13 13 C 1.34781 * 118.74387 * 138.20523 * 12 11 10 14 14 O 1.21280 * 119.99776 * 179.73836 * 13 12 11 15 15 C 1.50695 * 120.00032 * 359.72929 * 13 12 11 16 16 S 1.80998 * 109.47055 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99981 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00253 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00173 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99938 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47018 * 90.00195 * 21 19 17 23 23 H 1.48497 * 109.47190 * 210.00487 * 21 19 17 24 24 H 1.48503 * 109.47473 * 330.00481 * 21 19 17 25 25 C 1.44884 * 122.50781 * 317.92356 * 12 11 10 26 26 C 1.41448 * 110.99917 * 287.88971 * 8 7 6 27 27 H 1.08997 * 109.47180 * 275.46478 * 1 2 3 28 28 H 1.09000 * 109.47431 * 35.46042 * 1 2 3 29 29 H 1.08999 * 109.47187 * 155.46304 * 1 2 3 30 30 H 1.07995 * 126.79840 * 180.25034 * 5 4 3 31 31 H 1.09002 * 109.47187 * 324.25828 * 7 6 2 32 32 H 1.08999 * 109.47362 * 204.26027 * 7 6 2 33 33 H 1.08996 * 109.53457 * 264.66358 * 9 8 7 34 34 H 1.09003 * 109.52722 * 24.81800 * 9 8 7 35 35 H 1.08991 * 109.44763 * 212.45753 * 10 9 8 36 36 H 1.08992 * 109.44364 * 332.39978 * 10 9 8 37 37 H 1.09005 * 109.30927 * 199.77525 * 11 10 9 38 38 H 1.08998 * 109.12413 * 80.58959 * 11 10 9 39 39 H 1.09002 * 109.47045 * 60.00208 * 15 13 12 40 40 H 1.09000 * 109.47077 * 300.00649 * 15 13 12 41 41 H 0.97001 * 120.00456 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.43420 * 210.07015 * 25 12 11 43 43 H 1.09001 * 109.43484 * 329.94187 * 25 12 11 44 44 H 1.09003 * 109.38546 * 71.52524 * 26 8 7 45 45 H 1.08994 * 109.30165 * 311.79378 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5391 -0.0003 8 7 1.6594 -2.9752 -1.3782 9 6 2.8394 -2.7889 -2.2210 10 6 2.9100 -3.9141 -3.2296 11 6 2.1952 -3.4947 -4.5297 12 7 0.9631 -2.7360 -4.2376 13 6 0.6793 -1.6491 -4.9823 14 8 -0.3294 -1.0118 -4.7651 15 6 1.6154 -1.2257 -6.0848 16 16 0.9636 0.2565 -6.8937 17 6 2.2172 0.5213 -8.1032 18 1 3.0605 -0.1507 -8.1629 19 6 2.1203 1.5930 -8.9800 20 7 1.0922 2.4117 -8.9075 21 14 3.4497 1.8742 -10.2618 22 1 3.0991 1.1446 -11.5067 23 1 3.5575 3.3264 -10.5527 24 1 4.7493 1.3751 -9.7449 25 6 0.0443 -3.1186 -3.1847 26 6 0.4494 -2.4250 -1.8619 27 1 -0.3633 0.0979 1.0230 28 1 -0.3634 0.8370 -0.5962 29 1 -0.3633 -0.9348 -0.4268 30 1 4.5527 -1.0839 0.0090 31 1 1.0224 -2.6708 0.6005 32 1 2.7313 -3.1356 0.4215 33 1 2.7671 -1.8351 -2.7435 34 1 3.7354 -2.7977 -1.6004 35 1 3.9535 -4.1421 -3.4465 36 1 2.4226 -4.7991 -2.8207 37 1 1.9384 -4.3854 -5.1033 38 1 2.8662 -2.8718 -5.1212 39 1 1.7035 -2.0298 -6.8154 40 1 2.5971 -1.0078 -5.6642 41 1 1.0243 3.1605 -9.5205 42 1 -0.9667 -2.8164 -3.4581 43 1 0.0754 -4.2000 -3.0515 44 1 0.5826 -1.3577 -2.0390 45 1 -0.3356 -2.5733 -1.1204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194919334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:30 Heat of formation + Delta-G solvation = 21.547891 kcal Electronic energy + Delta-G solvation = -28233.015416 eV Core-core repulsion = 24379.792888 eV Total energy + Delta-G solvation = -3853.222528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.95878 -41.43851 -39.49702 -36.84782 -34.70149 -34.62198 -34.24602 -33.51161 -31.67944 -29.95460 -28.26787 -27.69051 -27.52687 -25.99670 -23.90243 -23.19574 -22.40241 -20.85216 -20.41301 -19.45201 -18.70989 -18.28550 -18.02094 -17.41018 -17.06474 -16.91656 -16.47648 -16.31462 -16.02734 -15.71792 -15.19660 -14.84716 -14.77701 -14.58762 -14.44918 -14.07633 -13.97359 -13.75756 -13.42499 -13.28312 -13.23776 -13.11623 -12.92515 -12.82027 -12.66633 -12.33865 -12.26843 -12.03107 -11.84793 -11.76808 -11.72408 -11.35785 -11.17498 -10.85072 -10.30904 -10.21480 -9.66622 -9.26647 -8.71278 -8.38170 -6.16803 0.44819 1.23167 1.23942 1.39430 1.43245 1.53778 1.55890 2.13628 2.15345 2.24333 2.95975 2.97737 3.21810 3.35459 3.62619 3.67093 3.81625 3.82157 3.96459 4.09480 4.14972 4.16627 4.26458 4.36052 4.39006 4.44961 4.52450 4.57929 4.64531 4.66784 4.67872 4.80907 4.85629 4.87352 4.90538 4.98544 5.05008 5.15155 5.21688 5.30627 5.37338 5.71209 6.09696 6.15683 6.20065 6.38140 7.02886 7.15553 7.22788 8.71220 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003349 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.376698 B = 8358.816005 C = 9130.984543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.027 4.027 3 O 0.063 5.937 4 N -0.406 5.406 5 C 0.003 3.997 6 C -0.241 4.241 7 C 0.141 3.859 8 N -0.536 5.536 9 C 0.073 3.927 10 C -0.117 4.117 11 C 0.096 3.904 12 N -0.599 5.599 13 C 0.525 3.475 14 O -0.562 6.562 15 C -0.123 4.123 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.259 1.259 25 C 0.117 3.883 26 C 0.055 3.945 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.213 0.787 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.002 0.998 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.272 0.728 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.004 0.996 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -18.381 20.808 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 O 0.003 5.997 4 N -0.114 5.114 5 C -0.176 4.176 6 C -0.247 4.247 7 C 0.014 3.986 8 N -0.257 5.257 9 C -0.055 4.055 10 C -0.155 4.155 11 C -0.026 4.026 12 N -0.332 5.332 13 C 0.313 3.687 14 O -0.440 6.440 15 C -0.274 4.274 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.183 1.183 25 C -0.006 4.006 26 C -0.075 4.075 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.230 0.770 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.021 0.979 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.022 0.978 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.627 -16.754 21.059 27.039 hybrid contribution 1.582 0.501 -1.366 2.150 sum 4.209 -16.253 19.693 25.879 Atomic orbital electron populations 1.20792 0.82533 1.05603 1.05520 1.25027 0.97430 0.85829 1.00886 1.84778 1.11783 1.34650 1.68485 1.73883 0.97652 1.18731 1.21129 1.25453 1.01116 0.89750 1.01330 1.22369 0.91576 1.00215 1.10521 1.20789 1.03877 0.84300 0.89653 1.58952 1.02944 1.61035 1.02814 1.21507 0.92557 0.96417 0.95003 1.21885 1.01862 0.99105 0.92687 1.22412 0.84508 0.96547 0.99127 1.47849 1.24728 1.27016 1.33621 1.20134 0.85576 0.80670 0.82354 1.90661 1.28676 1.54397 1.70300 1.23379 1.01816 1.02669 0.99583 1.85526 1.34897 1.31196 1.40726 1.23176 1.09874 1.16637 1.19833 0.90160 1.26123 0.98966 0.94281 0.99616 1.70177 1.30906 1.15648 1.37983 0.84968 0.77789 0.77727 0.77599 1.18968 1.20228 1.18319 1.21675 0.92558 1.01240 0.85153 1.21933 0.92819 0.95469 0.97288 0.86734 0.90781 0.87450 0.77033 0.87511 0.86960 0.97938 0.89430 0.88127 0.88440 0.89464 0.90917 0.87680 0.88700 0.91937 0.91129 0.86998 0.97770 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.67 71.23 0.69 -0.73 16 2 C -0.03 -0.61 6.83 25.04 0.17 -0.44 16 3 O 0.06 1.85 11.20 71.64 0.80 2.65 16 4 N -0.41 -11.83 12.07 -59.28 -0.72 -12.55 16 5 C 0.00 0.06 11.56 85.71 0.99 1.05 16 6 C -0.24 -4.46 4.50 -19.74 -0.09 -4.55 16 7 C 0.14 1.62 5.42 85.56 0.46 2.08 16 8 N -0.54 -7.74 4.00 -916.20 -3.67 -11.41 16 9 C 0.07 1.21 4.33 85.87 0.37 1.58 16 10 C -0.12 -1.51 5.79 30.43 0.18 -1.33 16 11 C 0.10 1.81 6.03 86.56 0.52 2.33 16 12 N -0.60 -15.75 2.17 -817.15 -1.78 -17.53 16 13 C 0.53 20.15 7.65 87.65 0.67 20.82 16 14 O -0.56 -26.25 15.29 -3.03 -0.05 -26.30 16 15 C -0.12 -5.16 4.49 71.23 0.32 -4.84 16 16 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.55 -32.04 9.50 67.96 0.65 -31.40 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.87 5.49 84.86 0.47 1.33 16 20 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 21 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 25 C 0.12 2.47 5.51 87.28 0.48 2.95 16 26 C 0.05 1.01 3.66 87.90 0.32 1.33 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.51 4.32 -2.39 -0.01 1.50 16 30 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.11 0.85 7.79 -2.39 -0.02 0.83 16 32 H 0.11 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.00 0.06 7.33 -2.39 -0.02 0.04 16 34 H 0.09 1.16 7.20 -2.39 -0.02 1.14 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.02 7.98 -2.39 -0.02 1.00 16 37 H 0.09 1.33 8.14 -2.38 -0.02 1.32 16 38 H 0.07 1.55 5.87 -2.39 -0.01 1.54 16 39 H 0.10 3.99 8.03 -2.39 -0.02 3.97 16 40 H 0.09 3.76 7.42 -2.40 -0.02 3.74 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.07 1.79 7.28 -2.39 -0.02 1.77 16 43 H 0.11 1.70 8.11 -2.39 -0.02 1.68 16 44 H 0.00 0.11 6.05 -2.39 -0.01 0.10 16 45 H 0.11 1.42 6.51 -2.39 -0.02 1.41 16 Total: -1.00 -83.20 368.55 2.95 -80.24 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.01 Total: 14.73 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 6.20 Total: -9.81 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.87 Total: -98.11 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.76 Total: -23.65 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -83.20 2.95 -80.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.792 kcal (2) G-P(sol) polarization free energy of solvation -83.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds