Wall clock time and date at job start Tue Mar 31 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41378 * 126.79988 * 2 1 4 4 C 1.35449 * 103.98616 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.78102 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47347 * 89.99713 * 5 4 3 7 7 C 1.46898 * 111.00161 * 180.02562 * 6 5 4 8 8 C 1.53044 * 109.46072 * 205.00010 * 7 6 5 9 9 C 1.53191 * 109.31440 * 178.61380 * 8 7 6 10 10 N 1.46926 * 108.89109 * 54.56430 * 9 8 7 11 11 C 1.34780 * 120.62730 * 126.46248 * 10 9 8 12 12 O 1.21276 * 120.00248 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99585 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99767 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00570 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99656 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99952 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47362 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47347 * 210.00283 * 19 17 15 22 22 H 1.48498 * 109.46995 * 330.00049 * 19 17 15 23 23 C 1.46957 * 118.71783 * 306.64359 * 10 9 8 24 24 C 1.53040 * 109.45864 * 84.93413 * 7 6 5 25 25 O 1.34047 * 106.44392 * 0.23737 * 4 3 2 26 26 N 1.20921 * 111.56738 * 359.56528 * 25 4 3 27 27 H 1.08999 * 109.47146 * 90.00617 * 1 2 3 28 28 H 1.09000 * 109.47269 * 210.00777 * 1 2 3 29 29 H 1.09000 * 109.47563 * 330.00558 * 1 2 3 30 30 H 1.08003 * 128.01074 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47053 * 329.99476 * 5 4 3 32 32 H 1.09000 * 109.47454 * 210.00349 * 5 4 3 33 33 H 1.00896 * 111.00345 * 303.95695 * 6 5 4 34 34 H 1.08996 * 109.46143 * 324.97425 * 7 6 5 35 35 H 1.09003 * 109.49852 * 58.66645 * 8 7 6 36 36 H 1.08997 * 109.49691 * 298.57078 * 8 7 6 37 37 H 1.09002 * 109.58786 * 174.42474 * 9 8 7 38 38 H 1.08996 * 109.58870 * 294.70753 * 9 8 7 39 39 H 1.09002 * 109.47438 * 299.99718 * 13 11 10 40 40 H 1.08999 * 109.47522 * 60.00065 * 13 11 10 41 41 H 0.97005 * 120.00277 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46843 * 293.57352 * 23 10 9 43 43 H 1.09002 * 109.71597 * 173.28386 * 23 10 9 44 44 H 1.08995 * 109.49643 * 301.33531 * 24 7 6 45 45 H 1.08994 * 109.49843 * 61.40291 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3696 -0.0014 6 7 5.3252 1.6177 1.3833 7 6 6.5914 2.3614 1.4217 8 6 7.3104 2.0761 2.7422 9 6 8.6462 2.8258 2.7640 10 7 8.3961 4.2510 2.5089 11 6 8.8571 5.1916 3.3570 12 8 9.4855 4.8649 4.3415 13 6 8.5918 6.6493 3.0818 14 16 9.3325 7.6551 4.3918 15 6 8.8819 9.2645 3.8336 16 1 8.3128 9.3806 2.9232 17 6 9.2586 10.3830 4.5640 18 7 8.9217 11.5853 4.1473 19 14 10.2426 10.1822 6.1391 20 1 11.6933 10.2072 5.8232 21 1 9.9195 11.2934 7.0698 22 1 9.8970 8.8863 6.7767 23 6 7.6301 4.6306 1.3136 24 6 6.3057 3.8606 1.3080 25 8 3.4537 -0.7253 -0.0062 26 7 2.2868 -1.0423 -0.0004 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 2.0709 2.1744 0.0004 31 1 4.7648 2.3210 -0.5154 32 1 5.6657 0.7859 -0.5156 33 1 4.6062 2.1016 1.8999 34 1 7.2220 2.0480 0.5897 35 1 7.4928 1.0053 2.8332 36 1 6.6910 2.4121 3.5737 37 1 9.1164 2.7063 3.7401 38 1 9.3023 2.4260 1.9910 39 1 9.0291 6.9234 2.1217 40 1 7.5163 6.8240 3.0543 41 1 9.1852 12.3671 4.6576 42 1 8.2024 4.3795 0.4205 43 1 7.4298 5.7019 1.3301 44 1 5.7729 4.0599 0.3782 45 1 5.6953 4.1797 2.1527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199386804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:12 Heat of formation + Delta-G solvation = 23.824653 kcal Electronic energy + Delta-G solvation = -26115.274103 eV Core-core repulsion = 22262.150303 eV Total energy + Delta-G solvation = -3853.123800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.28091 -40.17307 -38.20742 -35.89490 -35.12692 -33.16710 -32.46599 -31.78237 -30.60773 -29.09624 -29.04784 -26.36879 -25.63538 -23.85394 -23.53356 -23.24590 -21.28543 -20.52719 -19.26638 -17.98681 -17.85318 -17.58807 -16.90051 -15.86207 -15.73985 -15.56160 -15.33792 -15.11945 -14.97910 -14.53372 -14.16567 -14.03756 -13.82243 -13.79810 -13.48366 -13.30736 -13.24206 -13.00714 -12.79365 -12.62645 -12.50716 -12.10873 -11.82691 -11.57993 -11.49207 -11.29370 -11.16393 -11.03074 -10.88153 -10.60923 -10.40140 -9.89206 -9.88038 -9.51425 -9.02991 -8.96717 -8.65517 -8.51688 -6.94973 -6.31706 -4.03629 1.02758 1.81195 2.65077 2.68315 2.89401 3.16356 3.31385 3.48715 3.55951 3.64851 3.79235 4.02822 4.30482 4.32889 4.42202 4.54236 4.61322 4.67235 4.70847 4.77866 4.88418 4.98724 5.01993 5.03525 5.06160 5.07229 5.07910 5.24056 5.31923 5.33699 5.36361 5.40531 5.50065 5.64647 5.68760 5.70103 5.76312 5.83028 5.94170 5.97183 6.42521 6.52788 6.78193 7.41585 7.90375 7.91175 8.38048 8.40400 9.14570 10.77402 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.001892 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.936632 B =14792.956610 C =15596.353943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.014 3.986 3 C -0.229 4.229 4 C -0.019 4.019 5 C 0.136 3.864 6 N -0.680 5.680 7 C 0.090 3.910 8 C -0.120 4.120 9 C 0.113 3.887 10 N -0.619 5.619 11 C 0.534 3.466 12 O -0.518 6.518 13 C -0.122 4.122 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.112 3.888 24 C -0.167 4.167 25 O 0.108 5.892 26 N -0.366 5.366 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.348 0.652 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 -22.108 -12.214 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.251 4.251 4 C -0.084 4.084 5 C 0.006 3.994 6 N -0.311 5.311 7 C -0.019 4.019 8 C -0.159 4.159 9 C -0.010 4.010 10 N -0.355 5.355 11 C 0.322 3.678 12 O -0.392 6.392 13 C -0.272 4.272 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.012 4.012 24 C -0.207 4.207 25 O 0.041 5.959 26 N -0.070 5.070 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.741 -24.346 -10.652 29.052 hybrid contribution -0.907 2.437 -0.906 2.753 sum -12.648 -21.909 -11.558 27.813 Atomic orbital electron populations 1.20173 0.85912 1.03902 1.03394 1.23615 0.99125 0.88801 1.02950 1.22475 0.91295 1.01221 1.10104 1.24326 0.97751 0.83955 1.02331 1.20372 0.90232 0.97070 0.91696 1.60589 1.06245 1.52795 1.11505 1.21619 0.90522 0.90459 0.99311 1.21892 0.96084 1.01056 0.96874 1.21544 0.96382 0.79761 1.03323 1.48095 1.55916 1.06275 1.25259 1.20294 0.78226 0.87278 0.82050 1.90690 1.39163 1.82096 1.27289 1.23309 1.05142 0.93652 1.05105 1.84821 1.73309 1.02034 1.31453 1.22300 1.41520 0.89147 1.13933 0.89429 1.24713 0.94818 0.94131 0.97641 1.69935 1.44768 0.97687 1.39258 0.86735 0.81277 0.80328 0.83520 1.19191 1.19931 1.15919 1.21633 0.91249 1.00611 0.87741 1.22688 0.98438 0.96634 1.02907 1.84841 1.21430 1.22696 1.66915 1.73875 0.89392 1.24191 1.19523 0.90157 0.90520 0.89940 0.81196 0.91303 0.88331 0.83354 0.89747 0.89883 0.91279 0.88599 0.91691 0.88595 0.88619 0.91927 0.91260 0.88999 0.90776 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.03 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.23 -1.58 11.06 -39.38 -0.44 -2.01 16 4 C -0.02 -0.14 7.00 -35.31 -0.25 -0.39 16 5 C 0.14 0.71 6.05 -4.98 -0.03 0.68 16 6 N -0.68 -4.28 6.24 -107.95 -0.67 -4.96 16 7 C 0.09 0.59 2.43 -67.67 -0.16 0.42 16 8 C -0.12 -1.00 5.69 -26.61 -0.15 -1.15 16 9 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 10 N -0.62 -7.70 2.98 -172.74 -0.51 -8.22 16 11 C 0.53 9.32 7.72 -10.98 -0.08 9.23 16 12 O -0.52 -11.01 15.27 5.56 0.08 -10.92 16 13 C -0.12 -2.29 4.50 36.01 0.16 -2.13 16 14 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 15 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 16 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 19 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 23 C 0.11 1.01 6.33 -3.69 -0.02 0.98 16 24 C -0.17 -1.13 5.33 -26.61 -0.14 -1.27 16 25 O 0.11 1.08 11.20 17.16 0.19 1.27 16 26 N -0.37 -3.91 12.07 33.42 0.40 -3.51 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.07 0.25 7.41 -51.93 -0.38 -0.13 16 32 H 0.10 0.46 8.06 -51.93 -0.42 0.04 16 33 H 0.35 2.17 8.47 -39.29 -0.33 1.84 16 34 H 0.08 0.49 7.80 -51.93 -0.40 0.09 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.21 7.01 -51.93 -0.36 0.85 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.68 7.95 -51.92 -0.41 1.27 16 40 H 0.10 1.67 7.69 -51.92 -0.40 1.27 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.88 5.95 -51.93 -0.31 0.58 16 44 H 0.07 0.37 7.42 -51.93 -0.39 -0.01 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -34.83 382.13 -8.63 -43.46 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.79 Total: -1.94 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.15 Total: -6.81 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.01 Total: -42.13 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.28 Total: -9.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.83 -8.63 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199386804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.280 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds