Wall clock time and date at job start Tue Mar 31 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41378 * 126.79988 * 2 1 4 4 C 1.35449 * 103.98616 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.78102 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47347 * 89.99713 * 5 4 3 7 7 C 1.46898 * 111.00161 * 180.02562 * 6 5 4 8 8 C 1.53044 * 109.46072 * 205.00010 * 7 6 5 9 9 C 1.53191 * 109.31440 * 178.61380 * 8 7 6 10 10 N 1.46926 * 108.89109 * 54.56430 * 9 8 7 11 11 C 1.34780 * 120.62730 * 126.46248 * 10 9 8 12 12 O 1.21276 * 120.00248 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99585 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99767 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00570 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99656 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99952 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47362 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47347 * 210.00283 * 19 17 15 22 22 H 1.48498 * 109.46995 * 330.00049 * 19 17 15 23 23 C 1.46957 * 118.71783 * 306.64359 * 10 9 8 24 24 C 1.53040 * 109.45864 * 84.93413 * 7 6 5 25 25 O 1.34047 * 106.44392 * 0.23737 * 4 3 2 26 26 N 1.20921 * 111.56738 * 359.56528 * 25 4 3 27 27 H 1.08999 * 109.47146 * 90.00617 * 1 2 3 28 28 H 1.09000 * 109.47269 * 210.00777 * 1 2 3 29 29 H 1.09000 * 109.47563 * 330.00558 * 1 2 3 30 30 H 1.08003 * 128.01074 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47053 * 329.99476 * 5 4 3 32 32 H 1.09000 * 109.47454 * 210.00349 * 5 4 3 33 33 H 1.00896 * 111.00345 * 303.95695 * 6 5 4 34 34 H 1.08996 * 109.46143 * 324.97425 * 7 6 5 35 35 H 1.09003 * 109.49852 * 58.66645 * 8 7 6 36 36 H 1.08997 * 109.49691 * 298.57078 * 8 7 6 37 37 H 1.09002 * 109.58786 * 174.42474 * 9 8 7 38 38 H 1.08996 * 109.58870 * 294.70753 * 9 8 7 39 39 H 1.09002 * 109.47438 * 299.99718 * 13 11 10 40 40 H 1.08999 * 109.47522 * 60.00065 * 13 11 10 41 41 H 0.97005 * 120.00277 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46843 * 293.57352 * 23 10 9 43 43 H 1.09002 * 109.71597 * 173.28386 * 23 10 9 44 44 H 1.08995 * 109.49643 * 301.33531 * 24 7 6 45 45 H 1.08994 * 109.49843 * 61.40291 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3696 -0.0014 6 7 5.3252 1.6177 1.3833 7 6 6.5914 2.3614 1.4217 8 6 7.3104 2.0761 2.7422 9 6 8.6462 2.8258 2.7640 10 7 8.3961 4.2510 2.5089 11 6 8.8571 5.1916 3.3570 12 8 9.4855 4.8649 4.3415 13 6 8.5918 6.6493 3.0818 14 16 9.3325 7.6551 4.3918 15 6 8.8819 9.2645 3.8336 16 1 8.3128 9.3806 2.9232 17 6 9.2586 10.3830 4.5640 18 7 8.9217 11.5853 4.1473 19 14 10.2426 10.1822 6.1391 20 1 11.6933 10.2072 5.8232 21 1 9.9195 11.2934 7.0698 22 1 9.8970 8.8863 6.7767 23 6 7.6301 4.6306 1.3136 24 6 6.3057 3.8606 1.3080 25 8 3.4537 -0.7253 -0.0062 26 7 2.2868 -1.0423 -0.0004 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 2.0709 2.1744 0.0004 31 1 4.7648 2.3210 -0.5154 32 1 5.6657 0.7859 -0.5156 33 1 4.6062 2.1016 1.8999 34 1 7.2220 2.0480 0.5897 35 1 7.4928 1.0053 2.8332 36 1 6.6910 2.4121 3.5737 37 1 9.1164 2.7063 3.7401 38 1 9.3023 2.4260 1.9910 39 1 9.0291 6.9234 2.1217 40 1 7.5163 6.8240 3.0543 41 1 9.1852 12.3671 4.6576 42 1 8.2024 4.3795 0.4205 43 1 7.4298 5.7019 1.3301 44 1 5.7729 4.0599 0.3782 45 1 5.6953 4.1797 2.1527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199386804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:12 Heat of formation + Delta-G solvation = -0.273133 kcal Electronic energy + Delta-G solvation = -26116.319062 eV Core-core repulsion = 22262.150303 eV Total energy + Delta-G solvation = -3854.168759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.88134 -41.21696 -39.10933 -36.71009 -35.68498 -34.67151 -33.92463 -32.62237 -31.33875 -30.29826 -29.56557 -27.86459 -26.95750 -24.58632 -24.23383 -23.89073 -22.01610 -21.14929 -20.38231 -19.56525 -18.61862 -18.37018 -18.08868 -17.17521 -16.85369 -16.74546 -16.28522 -16.03891 -15.72800 -15.63522 -15.04617 -14.99047 -14.87806 -14.79940 -14.29667 -14.19626 -14.03188 -13.90416 -13.65869 -13.41711 -13.33299 -13.23268 -13.17636 -13.01518 -12.66299 -12.50468 -12.20263 -12.07133 -11.86630 -11.81633 -11.51233 -11.17158 -10.94343 -10.90972 -10.52077 -10.46617 -9.71861 -9.39539 -9.00135 -8.51567 -6.22318 0.47133 0.98304 1.26625 1.31137 1.46391 1.53767 1.54950 2.09336 2.17610 2.24986 2.68922 2.86760 3.14244 3.30719 3.54208 3.54258 3.76387 3.95220 4.05785 4.10270 4.17380 4.18910 4.27724 4.35057 4.37647 4.40400 4.49872 4.58829 4.61849 4.67424 4.70826 4.76096 4.85282 4.91715 4.96019 4.97426 5.04748 5.16509 5.25401 5.30412 5.59664 5.70858 5.95788 6.11288 6.26529 6.33041 6.93928 7.10915 7.32751 8.60536 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.001892 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.936632 B =14792.956610 C =15596.353943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.004 3.996 3 C -0.229 4.229 4 C -0.021 4.021 5 C 0.140 3.860 6 N -0.688 5.688 7 C 0.099 3.901 8 C -0.112 4.112 9 C 0.111 3.889 10 N -0.605 5.605 11 C 0.532 3.468 12 O -0.566 6.566 13 C -0.105 4.105 14 S -0.181 6.181 15 C -0.526 4.526 16 H 0.064 0.936 17 C 0.047 3.953 18 N -0.915 5.915 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.238 1.238 23 C 0.102 3.898 24 C -0.158 4.158 25 O 0.084 5.916 26 N -0.404 5.404 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.348 0.652 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.277 0.723 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 -22.914 -13.636 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.154 4.154 3 C -0.251 4.251 4 C -0.086 4.086 5 C 0.010 3.990 6 N -0.320 5.320 7 C -0.010 4.010 8 C -0.151 4.151 9 C -0.011 4.011 10 N -0.339 5.339 11 C 0.320 3.680 12 O -0.445 6.445 13 C -0.255 4.255 14 S 0.046 5.954 15 C -0.674 4.674 16 H 0.082 0.918 17 C -0.159 4.159 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.162 1.162 23 C -0.021 4.021 24 C -0.198 4.198 25 O 0.021 5.979 26 N -0.112 5.112 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.213 0.787 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.167 0.833 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.385 -25.172 -12.124 30.562 hybrid contribution -0.811 2.583 -0.612 2.776 sum -13.196 -22.589 -12.735 29.096 Atomic orbital electron populations 1.20306 0.84179 1.04612 1.04340 1.24227 1.00491 0.88954 1.01774 1.22831 0.90777 1.02023 1.09442 1.24814 0.98982 0.83188 1.01578 1.20503 0.89382 0.97901 0.91168 1.60500 1.06221 1.52843 1.12402 1.21510 0.90736 0.90265 0.98497 1.21803 0.94711 1.00981 0.97638 1.21701 0.98008 0.78595 1.02818 1.48123 1.54477 1.06297 1.24978 1.20027 0.78442 0.87257 0.82318 1.90674 1.41770 1.82556 1.29500 1.23273 1.05439 0.93798 1.03021 1.84779 1.74385 1.01311 1.34931 1.22434 1.40816 0.91084 1.13071 0.91772 1.25533 0.95835 0.93961 1.00572 1.70008 1.46057 0.98486 1.40774 0.85892 0.79968 0.80440 0.80234 1.18739 1.18354 1.16231 1.21985 0.92421 1.00802 0.86898 1.22644 0.96989 0.96267 1.03900 1.84788 1.21345 1.24147 1.67654 1.73874 0.89989 1.25704 1.21649 0.89014 0.90952 0.88081 0.78678 0.88815 0.87563 0.83311 0.87961 0.89091 0.93105 0.91248 0.89199 0.87005 0.87153 0.91380 0.88526 0.89605 0.87902 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 71.24 0.75 0.04 16 2 C 0.00 0.06 7.33 43.58 0.32 0.38 16 3 C -0.23 -2.64 11.06 22.40 0.25 -2.39 16 4 C -0.02 -0.27 7.00 25.04 0.18 -0.10 16 5 C 0.14 0.97 6.05 85.56 0.52 1.48 16 6 N -0.69 -6.55 6.24 -495.46 -3.09 -9.64 16 7 C 0.10 0.93 2.43 44.94 0.11 1.04 16 8 C -0.11 -1.64 5.69 30.67 0.17 -1.46 16 9 C 0.11 2.13 6.43 86.36 0.56 2.69 16 10 N -0.60 -13.88 2.98 -818.82 -2.44 -16.32 16 11 C 0.53 18.19 7.72 87.66 0.68 18.86 16 12 O -0.57 -24.29 15.27 -3.02 -0.05 -24.33 16 13 C -0.10 -3.86 4.50 71.24 0.32 -3.54 16 14 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 15 C -0.53 -30.21 10.04 67.95 0.68 -29.52 16 16 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 17 C 0.05 2.70 5.50 84.86 0.47 3.17 16 18 N -0.92 -55.02 13.97 21.65 0.30 -54.72 16 19 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 20 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 23 C 0.10 1.48 6.33 86.36 0.55 2.03 16 24 C -0.16 -1.55 5.33 30.67 0.16 -1.38 16 25 O 0.08 1.63 11.20 71.57 0.80 2.43 16 26 N -0.40 -8.57 12.07 -49.57 -0.60 -9.16 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.09 0.23 7.41 -2.38 -0.02 0.21 16 32 H 0.11 0.61 8.06 -2.39 -0.02 0.59 16 33 H 0.35 3.38 8.47 -89.70 -0.76 2.62 16 34 H 0.10 0.68 7.80 -2.39 -0.02 0.66 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.74 7.01 -2.39 -0.02 1.73 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 3.77 7.95 -2.39 -0.02 3.75 16 40 H 0.11 3.74 7.69 -2.40 -0.02 3.72 16 41 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.40 5.95 -2.39 -0.01 1.38 16 44 H 0.10 0.50 7.42 -2.39 -0.02 0.48 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -78.14 382.13 1.69 -76.44 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.21 Total: 7.47 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.70 Total: -8.70 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -5.83 Total: -89.84 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.76 Total: -21.90 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -78.14 1.69 -76.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199386804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.168 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds