Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53041 * 109.45982 * 275.06220 * 9 8 7 11 11 C 1.53193 * 109.31390 * 178.61669 * 10 9 8 12 12 N 1.46927 * 108.77403 * 54.64072 * 11 10 9 13 13 C 1.34769 * 120.63075 * 126.37115 * 12 11 10 14 14 O 1.21284 * 120.00015 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00198 * 0.02562 * 13 12 11 16 16 S 1.80996 * 109.47157 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00018 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00098 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47473 * 119.99947 * 21 19 17 24 24 H 1.48505 * 109.47214 * 240.00280 * 21 19 17 25 25 C 1.46933 * 118.73618 * 306.39097 * 12 11 10 26 26 C 1.53042 * 109.45903 * 154.99909 * 9 8 7 27 27 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 28 28 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 29 29 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 30 30 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 32 32 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 33 33 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 34 34 H 1.08993 * 109.46407 * 35.02572 * 9 8 7 35 35 H 1.08997 * 109.49924 * 298.57694 * 10 9 8 36 36 H 1.08999 * 109.49473 * 58.66740 * 10 9 8 37 37 H 1.09002 * 109.58513 * 294.85132 * 11 10 9 38 38 H 1.08999 * 109.70282 * 174.49355 * 11 10 9 39 39 H 1.08996 * 109.47199 * 300.00255 * 15 13 12 40 40 H 1.09005 * 109.47040 * 60.00430 * 15 13 12 41 41 H 0.97003 * 119.99559 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58094 * 293.82219 * 25 12 11 43 43 H 1.08994 * 109.70271 * 173.46894 * 25 12 11 44 44 H 1.09003 * 109.49579 * 301.33798 * 26 9 8 45 45 H 1.09006 * 109.49929 * 61.40017 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 2.4812 -5.3116 -1.3069 11 6 2.0162 -6.7712 -1.3121 12 7 1.1962 -7.0020 -2.5092 13 6 1.4880 -8.0072 -3.3581 14 8 0.8037 -8.1870 -4.3432 15 6 2.6647 -8.9077 -3.0836 16 16 2.7937 -10.1487 -4.3948 17 6 4.2084 -11.0382 -3.8362 18 1 4.7065 -10.7431 -2.9246 19 6 4.6821 -12.1187 -4.5674 20 7 4.0747 -12.4786 -5.6784 21 14 6.1815 -13.0621 -3.9749 22 1 6.6756 -12.4622 -2.7095 23 1 5.8121 -14.4808 -3.7383 24 1 7.2485 -12.9936 -5.0055 25 6 0.0521 -6.1157 -2.7634 26 6 0.5391 -4.6635 -2.7417 27 1 -0.3633 -0.0006 -1.0278 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.4065 1.3436 0.0003 31 1 2.5902 -3.1348 0.5157 32 1 0.8916 -2.6029 0.5158 33 1 2.5604 -2.8663 -1.8996 34 1 0.5852 -4.5826 -0.5893 35 1 3.1479 -5.1390 -2.1517 36 1 3.0097 -5.1015 -0.3770 37 1 1.4232 -6.9690 -0.4192 38 1 2.8823 -7.4327 -1.3295 39 1 3.5781 -8.3136 -3.0550 40 1 2.5250 -9.4057 -2.1240 41 1 4.4060 -13.2336 -6.1895 42 1 -0.7010 -6.2601 -1.9887 43 1 -0.3786 -6.3422 -3.7386 44 1 -0.3147 -3.9920 -2.8332 45 1 1.2239 -4.4965 -3.5732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199394317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -13.395382 kcal Electronic energy + Delta-G solvation = -26311.258864 eV Core-core repulsion = 22456.521082 eV Total energy + Delta-G solvation = -3854.737782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.71711 -40.07972 -38.08286 -35.76856 -35.45350 -32.89797 -32.45046 -31.71889 -30.72718 -29.07274 -28.02120 -25.78042 -25.47482 -23.75986 -23.38032 -22.46640 -21.34660 -20.95858 -19.19590 -17.80243 -17.50839 -17.13867 -16.78753 -15.93486 -15.67439 -15.57747 -15.38630 -15.20930 -14.82756 -14.50487 -14.16354 -13.89421 -13.82965 -13.64208 -13.33208 -13.16336 -13.11119 -12.82648 -12.64012 -12.43904 -12.37195 -12.01226 -11.75736 -11.46840 -11.37370 -11.17224 -11.09280 -11.03290 -10.91962 -10.81169 -10.75141 -9.81825 -9.39701 -9.17911 -9.09660 -8.85305 -8.56352 -8.24259 -6.52423 -6.23968 -3.94602 1.02533 2.27609 2.34734 2.90655 3.02350 3.19505 3.24060 3.28985 3.56673 3.70575 3.80195 4.17661 4.25333 4.39807 4.44591 4.51737 4.65303 4.74364 4.87279 4.89392 5.03361 5.08586 5.11243 5.22491 5.24073 5.29636 5.35700 5.38714 5.42438 5.50626 5.56793 5.59095 5.68673 5.69899 5.80911 5.83274 5.91274 5.98052 6.02372 6.07966 6.47783 6.61884 6.81742 7.32926 7.52198 7.57579 8.32940 8.53724 9.21398 10.83476 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.001962 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.321340 B =14267.359399 C =15278.929130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.007 3.993 3 N -0.489 5.489 4 C 0.173 3.827 5 O -0.205 6.205 6 C -0.051 4.051 7 C 0.147 3.853 8 N -0.679 5.679 9 C 0.090 3.910 10 C -0.167 4.167 11 C 0.114 3.886 12 N -0.621 5.621 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.113 3.887 26 C -0.119 4.119 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.249 0.751 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.347 0.653 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 24.293 15.428 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 N -0.218 5.218 4 C -0.054 4.054 5 O -0.091 6.091 6 C -0.104 4.104 7 C 0.018 3.982 8 N -0.310 5.310 9 C -0.019 4.019 10 C -0.206 4.206 11 C -0.011 4.011 12 N -0.358 5.358 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.010 4.010 26 C -0.158 4.158 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.456 24.744 13.739 29.030 hybrid contribution 3.161 -1.284 1.857 3.885 sum -3.295 23.461 15.596 28.364 Atomic orbital electron populations 1.20115 0.86310 1.02937 1.03281 1.21531 0.98084 0.87342 1.04358 1.70390 1.01451 1.31855 1.18102 1.28022 0.97606 0.79260 1.00462 1.84428 1.30252 1.24745 1.69677 1.23017 0.80699 0.97750 1.08887 1.20291 1.00966 0.85408 0.91529 1.60666 1.38516 1.20210 1.11615 1.21608 0.95883 0.85203 0.99218 1.22681 0.98906 0.96254 1.02807 1.21597 0.95802 0.95947 0.87734 1.48120 1.30653 1.31814 1.25163 1.20327 0.85417 0.79966 0.81981 1.90694 1.50938 1.70152 1.27224 1.23551 0.98006 1.01721 1.06841 1.85421 1.39509 1.30700 1.27812 1.22892 1.14990 1.17793 1.12620 0.90930 1.25000 0.97625 0.96381 0.94632 1.70032 1.39399 1.26618 1.14154 0.86116 0.81313 0.79354 0.78701 1.19645 1.20552 1.20551 1.21527 0.88070 0.88136 1.03276 1.21888 1.01080 0.96028 0.96837 0.90246 0.90750 0.90918 0.73501 0.93061 0.87665 0.83426 0.89913 0.90833 0.90954 0.91445 0.89101 0.89384 0.89322 0.92220 0.91834 0.88573 0.89992 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.22 36.00 0.37 -0.09 16 2 C 0.01 0.07 7.11 -82.81 -0.59 -0.52 16 3 N -0.49 -4.79 11.30 -11.18 -0.13 -4.92 16 4 C 0.17 1.25 13.23 52.10 0.69 1.94 16 5 O -0.20 -1.75 10.77 5.38 0.06 -1.69 16 6 C -0.05 -0.42 6.90 -35.69 -0.25 -0.67 16 7 C 0.15 0.93 5.82 -4.97 -0.03 0.90 16 8 N -0.68 -4.81 6.24 -107.94 -0.67 -5.48 16 9 C 0.09 0.65 2.43 -67.67 -0.16 0.49 16 10 C -0.17 -1.31 5.33 -26.61 -0.14 -1.46 16 11 C 0.11 1.13 6.34 -3.71 -0.02 1.10 16 12 N -0.62 -8.32 2.97 -172.77 -0.51 -8.83 16 13 C 0.54 9.98 7.72 -10.99 -0.08 9.89 16 14 O -0.52 -11.67 15.28 5.55 0.08 -11.58 16 15 C -0.15 -3.01 4.50 36.01 0.16 -2.85 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 C 0.11 1.27 6.43 -3.71 -0.02 1.24 16 26 C -0.12 -1.06 5.69 -26.61 -0.15 -1.21 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.37 7.17 -51.93 -0.37 -0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.25 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.05 0.30 7.41 -51.93 -0.38 -0.08 16 32 H 0.11 0.52 7.08 -51.93 -0.37 0.16 16 33 H 0.35 2.67 8.47 -39.30 -0.33 2.33 16 34 H 0.08 0.53 7.80 -51.93 -0.40 0.12 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.47 7.42 -51.93 -0.39 0.08 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 39 H 0.09 1.63 7.69 -51.92 -0.40 1.23 16 40 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 1.29 7.01 -51.93 -0.36 0.92 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -36.09 383.02 -8.59 -44.68 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.66 Total: -0.95 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.04 Total: -4.08 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.58 Total: -44.52 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.14 Total: -13.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.09 -8.59 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199394317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.288 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds