Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53041 * 109.45982 * 275.06220 * 9 8 7 11 11 C 1.53193 * 109.31390 * 178.61669 * 10 9 8 12 12 N 1.46927 * 108.77403 * 54.64072 * 11 10 9 13 13 C 1.34769 * 120.63075 * 126.37115 * 12 11 10 14 14 O 1.21284 * 120.00015 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00198 * 0.02562 * 13 12 11 16 16 S 1.80996 * 109.47157 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00018 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00098 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47473 * 119.99947 * 21 19 17 24 24 H 1.48505 * 109.47214 * 240.00280 * 21 19 17 25 25 C 1.46933 * 118.73618 * 306.39097 * 12 11 10 26 26 C 1.53042 * 109.45903 * 154.99909 * 9 8 7 27 27 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 28 28 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 29 29 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 30 30 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 32 32 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 33 33 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 34 34 H 1.08993 * 109.46407 * 35.02572 * 9 8 7 35 35 H 1.08997 * 109.49924 * 298.57694 * 10 9 8 36 36 H 1.08999 * 109.49473 * 58.66740 * 10 9 8 37 37 H 1.09002 * 109.58513 * 294.85132 * 11 10 9 38 38 H 1.08999 * 109.70282 * 174.49355 * 11 10 9 39 39 H 1.08996 * 109.47199 * 300.00255 * 15 13 12 40 40 H 1.09005 * 109.47040 * 60.00430 * 15 13 12 41 41 H 0.97003 * 119.99559 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58094 * 293.82219 * 25 12 11 43 43 H 1.08994 * 109.70271 * 173.46894 * 25 12 11 44 44 H 1.09003 * 109.49579 * 301.33798 * 26 9 8 45 45 H 1.09006 * 109.49929 * 61.40017 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 2.4812 -5.3116 -1.3069 11 6 2.0162 -6.7712 -1.3121 12 7 1.1962 -7.0020 -2.5092 13 6 1.4880 -8.0072 -3.3581 14 8 0.8037 -8.1870 -4.3432 15 6 2.6647 -8.9077 -3.0836 16 16 2.7937 -10.1487 -4.3948 17 6 4.2084 -11.0382 -3.8362 18 1 4.7065 -10.7431 -2.9246 19 6 4.6821 -12.1187 -4.5674 20 7 4.0747 -12.4786 -5.6784 21 14 6.1815 -13.0621 -3.9749 22 1 6.6756 -12.4622 -2.7095 23 1 5.8121 -14.4808 -3.7383 24 1 7.2485 -12.9936 -5.0055 25 6 0.0521 -6.1157 -2.7634 26 6 0.5391 -4.6635 -2.7417 27 1 -0.3633 -0.0006 -1.0278 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.4065 1.3436 0.0003 31 1 2.5902 -3.1348 0.5157 32 1 0.8916 -2.6029 0.5158 33 1 2.5604 -2.8663 -1.8996 34 1 0.5852 -4.5826 -0.5893 35 1 3.1479 -5.1390 -2.1517 36 1 3.0097 -5.1015 -0.3770 37 1 1.4232 -6.9690 -0.4192 38 1 2.8823 -7.4327 -1.3295 39 1 3.5781 -8.3136 -3.0550 40 1 2.5250 -9.4057 -2.1240 41 1 4.4060 -13.2336 -6.1895 42 1 -0.7010 -6.2601 -1.9887 43 1 -0.3786 -6.3422 -3.7386 44 1 -0.3147 -3.9920 -2.8332 45 1 1.2239 -4.4965 -3.5732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199394317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -41.343766 kcal Electronic energy + Delta-G solvation = -26312.470797 eV Core-core repulsion = 22456.521082 eV Total energy + Delta-G solvation = -3855.949715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.27948 -41.20090 -39.07977 -36.62725 -36.08475 -34.59470 -33.71117 -32.58568 -31.45839 -30.37456 -28.67848 -27.68430 -26.35657 -24.55477 -24.20390 -23.04632 -22.03536 -21.69120 -20.40821 -19.56110 -18.28836 -17.99230 -17.68877 -16.96344 -16.87995 -16.76677 -16.34325 -16.11501 -15.95482 -15.79492 -15.20806 -14.98266 -14.70045 -14.46871 -14.23516 -14.14190 -13.98001 -13.84850 -13.57859 -13.37794 -13.17169 -13.10482 -12.95342 -12.92290 -12.65736 -12.55845 -12.22967 -11.98024 -11.88183 -11.70530 -11.57549 -11.45533 -11.16864 -10.87366 -10.27006 -9.81195 -9.62591 -9.38083 -8.68388 -8.35660 -6.14047 0.47513 1.25297 1.40724 1.45639 1.56529 1.57571 1.70467 1.85681 2.11700 2.26418 2.98504 3.13988 3.24667 3.35612 3.63659 3.71402 3.82152 3.92661 3.97329 4.04225 4.17206 4.24077 4.26932 4.34178 4.42445 4.43312 4.49958 4.66663 4.71623 4.74963 4.81468 4.85219 4.89400 4.94390 5.00484 5.06203 5.13444 5.19541 5.28247 5.40915 5.47211 5.61010 5.94120 6.18924 6.23223 6.29988 6.76881 7.05573 7.15220 8.73812 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.001962 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.321340 B =14267.359399 C =15278.929130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.014 4.014 3 N -0.527 5.527 4 C 0.180 3.820 5 O -0.216 6.216 6 C -0.059 4.059 7 C 0.151 3.849 8 N -0.682 5.682 9 C 0.099 3.901 10 C -0.159 4.159 11 C 0.104 3.896 12 N -0.606 5.606 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.123 4.123 16 S -0.154 6.154 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.110 3.890 26 C -0.110 4.110 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.288 0.712 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.343 0.657 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 25.321 18.539 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 N -0.257 5.257 4 C -0.046 4.046 5 O -0.103 6.103 6 C -0.112 4.112 7 C 0.022 3.978 8 N -0.312 5.312 9 C -0.010 4.010 10 C -0.198 4.198 11 C -0.018 4.018 12 N -0.341 5.341 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.274 4.274 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.012 4.012 26 C -0.149 4.149 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.303 0.697 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.487 25.825 16.905 31.350 hybrid contribution 2.812 -1.424 0.957 3.294 sum -2.675 24.401 17.863 30.358 Atomic orbital electron populations 1.20165 0.85196 1.03768 1.03313 1.21946 0.99130 0.87544 1.04732 1.70393 1.02711 1.32815 1.19788 1.28951 0.98154 0.79213 0.98312 1.84437 1.30567 1.25371 1.69876 1.23351 0.80502 0.98503 1.08847 1.20398 1.02082 0.84307 0.90991 1.60612 1.38422 1.19879 1.12297 1.21518 0.95704 0.85158 0.98629 1.22632 0.99073 0.94744 1.03389 1.21944 0.95648 0.97322 0.86913 1.48137 1.31064 1.29998 1.24868 1.20123 0.84752 0.81005 0.82231 1.90676 1.52494 1.71906 1.29630 1.23362 0.99691 1.00020 1.04310 1.85615 1.40321 1.34081 1.32689 1.23216 1.14932 1.18061 1.12961 0.89897 1.26150 1.01117 0.97419 0.94595 1.70198 1.41452 1.27403 1.15717 0.84894 0.76677 0.77622 0.78681 1.17922 1.19920 1.19976 1.21709 0.87805 0.88915 1.02786 1.21790 1.01329 0.94419 0.97379 0.90521 0.88873 0.91164 0.69739 0.92118 0.85943 0.83927 0.87698 0.92483 0.88525 0.88453 0.89675 0.87763 0.87409 0.92001 0.89024 0.91428 0.88636 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.22 71.23 0.73 -0.07 16 2 C -0.01 -0.23 7.11 41.26 0.29 0.06 16 3 N -0.53 -9.82 11.30 -304.07 -3.43 -13.25 16 4 C 0.18 2.30 13.23 130.48 1.73 4.03 16 5 O -0.22 -3.31 10.77 -3.68 -0.04 -3.35 16 6 C -0.06 -0.87 6.90 24.79 0.17 -0.70 16 7 C 0.15 1.41 5.82 85.56 0.50 1.91 16 8 N -0.68 -7.74 6.24 -495.43 -3.09 -10.83 16 9 C 0.10 1.09 2.43 44.94 0.11 1.20 16 10 C -0.16 -1.98 5.33 30.67 0.16 -1.82 16 11 C 0.10 1.74 6.34 86.36 0.55 2.29 16 12 N -0.61 -15.38 2.97 -818.91 -2.43 -17.81 16 13 C 0.53 19.93 7.72 87.66 0.68 20.61 16 14 O -0.57 -26.79 15.28 -3.04 -0.05 -26.84 16 15 C -0.12 -4.89 4.50 71.24 0.32 -4.57 16 16 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.54 -30.97 9.50 67.95 0.65 -30.32 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 21 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.11 2.31 6.43 86.36 0.56 2.87 16 26 C -0.11 -1.75 5.69 30.67 0.17 -1.58 16 27 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.09 0.69 7.17 -2.39 -0.02 0.67 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.29 0.64 8.06 -2.91 -0.02 0.61 16 31 H 0.06 0.48 7.41 -2.39 -0.02 0.46 16 32 H 0.12 0.72 7.08 -2.39 -0.02 0.70 16 33 H 0.34 4.57 8.47 -89.70 -0.76 3.81 16 34 H 0.11 0.79 7.80 -2.39 -0.02 0.77 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.82 7.42 -2.39 -0.02 0.80 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.55 5.93 -2.39 -0.01 1.54 16 39 H 0.10 3.78 7.69 -2.40 -0.02 3.76 16 40 H 0.11 3.85 7.94 -2.39 -0.02 3.83 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.07 1.85 7.01 -2.39 -0.02 1.83 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -82.67 383.02 -0.57 -83.24 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.25 Total: 13.93 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 7.08 Total: -4.95 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -8.67 Total: -97.65 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.09 Total: -30.19 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -82.67 -0.57 -83.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199394317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.896 kcal (2) G-P(sol) polarization free energy of solvation -82.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds