Wall clock time and date at job start Tue Mar 31 2020 23:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29423 * 124.80425 * 2 1 4 4 C 1.30945 * 117.36083 * 179.72772 * 3 2 1 5 5 C 1.50701 * 122.90517 * 180.34296 * 4 3 2 6 6 C 1.35662 * 114.19167 * 0.53123 * 4 3 2 7 7 C 1.46688 * 126.13101 * 179.78879 * 6 4 3 8 8 O 1.21679 * 120.00081 * 43.81129 * 7 6 4 9 9 N 1.34774 * 119.99800 * 223.81450 * 7 6 4 10 10 C 1.47510 * 118.75741 * 175.01840 * 9 7 6 11 11 C 1.53570 * 111.02915 * 138.34472 * 10 9 7 12 12 C 1.51538 * 109.58146 * 320.02433 * 11 10 9 13 13 O 1.42145 * 108.75505 * 91.40142 * 12 11 10 14 14 C 1.38018 * 119.44157 * 272.76977 * 13 12 11 15 15 H 1.09003 * 109.46525 * 303.42691 * 14 13 12 16 16 C 1.53004 * 109.47083 * 183.43286 * 14 13 12 17 17 N 1.46505 * 109.47179 * 64.98729 * 16 14 13 18 18 C 1.36936 * 119.99841 * 179.72266 * 17 16 14 19 19 H 1.07995 * 119.99904 * 0.28185 * 18 17 16 20 20 C 1.38807 * 119.99523 * 180.27548 * 18 17 16 21 21 N 1.31621 * 119.99565 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47008 * 90.00010 * 22 20 18 24 24 H 1.48508 * 109.47008 * 209.99694 * 22 20 18 25 25 H 1.48491 * 109.47269 * 329.99923 * 22 20 18 26 26 C 1.45129 * 118.75563 * 354.99395 * 9 7 6 27 27 S 1.70959 * 124.80046 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47333 * 269.97675 * 1 2 3 29 29 H 1.09003 * 109.47510 * 29.97397 * 1 2 3 30 30 H 1.09009 * 109.47496 * 149.97588 * 1 2 3 31 31 H 1.08996 * 109.47367 * 270.19634 * 5 4 3 32 32 H 1.09000 * 109.46797 * 30.19721 * 5 4 3 33 33 H 1.08999 * 109.46961 * 150.19179 * 5 4 3 34 34 H 1.08999 * 109.16539 * 258.74043 * 10 9 7 35 35 H 1.08996 * 109.16740 * 17.94552 * 10 9 7 36 36 H 1.09005 * 109.45172 * 80.05587 * 11 10 9 37 37 H 1.09000 * 109.45305 * 199.98863 * 11 10 9 38 38 H 1.09006 * 109.58510 * 211.18236 * 12 11 10 39 39 H 1.09001 * 109.58820 * 331.61884 * 12 11 10 40 40 H 1.09004 * 109.46937 * 304.98809 * 16 14 13 41 41 H 1.08994 * 109.47230 * 184.98810 * 16 14 13 42 42 H 0.97000 * 119.99711 * 0.02562 * 17 16 14 43 43 H 0.97005 * 120.00086 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.45625 * 149.29008 * 26 9 7 45 45 H 1.08995 * 109.44928 * 29.32501 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 0.0055 5 6 4.5197 2.0416 0.0138 6 6 3.9351 -0.4060 -0.0009 7 6 5.3188 -0.8927 -0.0014 8 8 6.1439 -0.3813 0.7322 9 7 5.6762 -1.9065 -0.8144 10 6 7.0964 -2.3007 -0.8749 11 6 7.2434 -3.8292 -0.9004 12 6 6.2395 -4.4518 0.0487 13 8 5.0478 -4.7395 -0.6707 14 6 4.0788 -3.7647 -0.7957 15 1 3.7743 -3.4262 0.1947 16 6 2.8678 -4.3409 -1.5324 17 7 2.2561 -5.3937 -0.7177 18 6 1.1464 -6.0541 -1.1732 19 1 0.7249 -5.8020 -2.1350 20 6 0.5634 -7.0477 -0.3987 21 7 -0.5029 -7.6828 -0.8368 22 14 1.2923 -7.4833 1.2651 23 1 0.6650 -6.6420 2.3159 24 1 1.0344 -8.9160 1.5587 25 1 2.7567 -7.2382 1.2436 26 6 4.6492 -2.5693 -1.5968 27 16 2.4827 -1.4038 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 4.7571 2.3241 -1.0118 32 1 4.0756 2.8918 0.5314 33 1 5.4322 1.7395 0.5279 34 1 7.5457 -1.8829 -1.7758 35 1 7.6149 -1.9059 -0.0013 36 1 7.0621 -4.1944 -1.9113 37 1 8.2525 -4.1020 -0.5917 38 1 6.6494 -5.3741 0.4606 39 1 6.0192 -3.7543 0.8568 40 1 3.1884 -4.7597 -2.4863 41 1 2.1398 -3.5493 -1.7094 42 1 2.6345 -5.6199 0.1463 43 1 -0.9101 -8.3775 -0.2958 44 1 5.0806 -2.9306 -2.5304 45 1 3.8481 -1.8636 -1.8162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202021975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:52 Heat of formation + Delta-G solvation = -30.654753 kcal Electronic energy + Delta-G solvation = -28703.487798 eV Core-core repulsion = 24848.001594 eV Total energy + Delta-G solvation = -3855.486204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96236 -40.98481 -39.66797 -36.90914 -36.44225 -34.77760 -33.94387 -33.11469 -30.72868 -30.24009 -29.52356 -27.88612 -26.67067 -24.40794 -23.98573 -23.30473 -22.55821 -21.51050 -19.78648 -19.74646 -19.39149 -18.13322 -17.94161 -17.75507 -16.89571 -16.55038 -16.40037 -16.19573 -15.88527 -15.47266 -15.13807 -14.97550 -14.81074 -14.55812 -14.31097 -14.23409 -14.03302 -13.87179 -13.65869 -13.47153 -13.41783 -13.22181 -13.02736 -12.85608 -12.76227 -12.46190 -12.36493 -12.16711 -11.97411 -11.79053 -11.64195 -11.38101 -10.99459 -10.80225 -10.57710 -10.43369 -9.90749 -9.71494 -9.25836 -7.98730 -5.30848 -0.80253 0.05504 0.48995 1.28773 1.39625 1.41576 1.48878 1.65942 1.84126 2.50919 2.58315 2.94316 3.23117 3.34426 3.44668 3.73593 3.80361 3.87381 3.91818 3.94865 4.00150 4.14477 4.24163 4.26857 4.39321 4.50166 4.56763 4.58487 4.61420 4.65583 4.68093 4.77764 4.83454 4.85300 5.01103 5.04643 5.05092 5.14809 5.22071 5.31434 5.79528 5.96502 6.24349 6.52872 6.58082 6.78109 7.10898 7.86584 8.05169 9.22450 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.004926 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.603333 B = 5682.941022 C = 7628.511271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.052 3.948 3 N -0.499 5.499 4 C 0.137 3.863 5 C -0.087 4.087 6 C -0.336 4.336 7 C 0.598 3.402 8 O -0.551 6.551 9 N -0.597 5.597 10 C 0.108 3.892 11 C -0.154 4.154 12 C 0.064 3.936 13 O -0.390 6.390 14 C 0.091 3.909 15 H 0.039 0.961 16 C 0.167 3.833 17 N -0.751 5.751 18 C -0.225 4.225 19 H 0.066 0.934 20 C -0.055 4.055 21 N -0.981 5.981 22 Si 0.940 3.060 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.259 1.259 26 C 0.069 3.931 27 S 0.199 5.801 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.115 0.885 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 17.296 -0.204 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.222 4.222 3 N -0.215 5.215 4 C -0.001 4.001 5 C -0.146 4.146 6 C -0.460 4.460 7 C 0.385 3.615 8 O -0.431 6.431 9 N -0.328 5.328 10 C -0.012 4.012 11 C -0.192 4.192 12 C -0.012 4.012 13 O -0.308 6.308 14 C 0.030 3.970 15 H 0.056 0.944 16 C 0.040 3.960 17 N -0.397 5.397 18 C -0.356 4.356 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.632 5.632 22 Si 0.768 3.232 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.184 1.184 26 C -0.056 4.056 27 S 0.458 5.542 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.197 0.803 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.471 16.737 -0.081 21.485 hybrid contribution 0.479 0.217 1.179 1.291 sum 13.950 16.954 1.098 21.983 Atomic orbital electron populations 1.20743 0.82617 1.05791 1.05494 1.28206 1.03760 0.91930 0.98280 1.66197 1.04258 1.32026 1.18985 1.20871 0.90596 0.93677 0.94950 1.20597 0.96012 0.93819 1.04180 1.25424 0.98542 0.98130 1.23878 1.16991 0.85353 0.79771 0.79413 1.90755 1.52245 1.58928 1.41166 1.47836 1.09633 1.32814 1.42529 1.22084 0.78768 0.96068 1.04327 1.22429 1.01491 0.93339 1.01931 1.22420 0.84140 1.01144 0.93522 1.86386 1.28753 1.40842 1.74864 1.22241 0.88611 0.88744 0.97375 0.94399 1.20790 0.90592 0.90813 0.93815 1.42567 1.32675 1.43294 1.21130 1.19022 1.01861 1.12551 1.02123 0.91564 1.25309 0.98257 0.99154 1.01968 1.69854 1.24668 1.28685 1.39944 0.85619 0.79207 0.76980 0.81345 1.20390 1.22394 1.18350 1.22751 0.91856 0.94862 0.96122 1.85189 0.94723 1.08906 1.65417 0.87780 0.87688 0.88595 0.88960 0.89260 0.89931 0.89075 0.89382 0.89575 0.86590 0.87860 0.94451 0.94288 0.92464 0.80318 0.93427 0.86655 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.46 71.23 0.75 -0.76 16 2 C 0.05 1.26 7.38 88.46 0.65 1.91 16 3 N -0.50 -13.10 10.50 -178.29 -1.87 -14.97 16 4 C 0.14 3.60 6.79 42.09 0.29 3.88 16 5 C -0.09 -1.85 10.08 71.24 0.72 -1.13 16 6 C -0.34 -9.09 5.31 23.88 0.13 -8.97 16 7 C 0.60 16.40 7.22 86.45 0.62 17.02 16 8 O -0.55 -17.29 14.63 -4.28 -0.06 -17.35 16 9 N -0.60 -13.75 2.19 -822.68 -1.80 -15.55 16 10 C 0.11 1.94 6.18 86.38 0.53 2.47 16 11 C -0.15 -2.49 5.79 30.31 0.18 -2.32 16 12 C 0.06 1.46 6.37 71.50 0.46 1.91 16 13 O -0.39 -11.72 9.38 -117.90 -1.11 -12.83 16 14 C 0.09 2.66 1.67 31.21 0.05 2.71 16 15 H 0.04 1.20 6.26 -2.39 -0.01 1.19 16 16 C 0.17 5.86 5.74 86.38 0.50 6.35 16 17 N -0.75 -33.98 5.34 -343.44 -1.83 -35.82 16 18 C -0.22 -12.31 10.47 84.03 0.88 -11.43 16 19 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 20 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 21 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 22 Si 0.94 45.18 27.74 68.60 1.90 47.08 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 26 C 0.07 1.59 4.41 87.25 0.38 1.97 16 27 S 0.20 5.17 16.51 -56.49 -0.93 4.24 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.58 8.14 -2.38 -0.02 1.57 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.93 6.28 -2.39 -0.01 1.91 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.74 6.95 -2.39 -0.02 1.72 16 36 H 0.09 1.41 8.01 -2.38 -0.02 1.40 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 2.11 8.14 -2.38 -0.02 2.10 16 39 H 0.04 0.94 7.40 -2.39 -0.02 0.92 16 40 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.06 1.89 7.23 -2.39 -0.02 1.87 16 42 H 0.36 16.46 5.52 -92.71 -0.51 15.95 16 43 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 44 H 0.12 2.26 8.11 -2.39 -0.02 2.24 16 45 H 0.10 2.16 5.26 -5.34 -0.03 2.13 16 Total: -1.00 -72.21 365.04 1.63 -70.58 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.43 Total: 24.77 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.60 Total: 10.93 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.21 Total: -127.43 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.17 Total: -30.18 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -0.93 Total: 4.24 kcal Total: -72.21 1.63 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202021975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.930 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds