Wall clock time and date at job start Tue Mar 31 2020 22:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29518 * 121.53391 * 2 1 4 4 S 1.69485 * 107.84610 * 179.97438 * 3 2 1 5 5 C 1.72017 * 96.02472 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.31653 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36778 * 0.22495 * 5 4 3 8 8 C 1.47340 * 123.08694 * 179.75018 * 7 5 4 9 9 O 1.21608 * 119.99966 * 90.00391 * 8 7 5 10 10 N 1.34777 * 120.00009 * 270.00022 * 8 7 5 11 11 C 1.47511 * 118.75771 * 359.73650 * 10 8 7 12 12 C 1.53943 * 110.82153 * 138.25151 * 11 10 8 13 13 C 1.51529 * 109.72889 * 320.30572 * 12 11 10 14 14 O 1.42155 * 108.76661 * 91.29204 * 13 12 11 15 15 C 1.38012 * 119.44174 * 272.78395 * 14 13 12 16 16 H 1.08994 * 109.46780 * 303.42705 * 15 14 13 17 17 C 1.53003 * 109.47229 * 183.42989 * 15 14 13 18 18 N 1.46497 * 109.46947 * 64.98757 * 17 15 14 19 19 C 1.36931 * 119.99887 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00225 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00063 * 179.97438 * 19 18 17 22 22 N 1.31613 * 119.99484 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99948 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47320 * 59.99976 * 23 21 19 25 25 H 1.48496 * 109.47343 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47307 * 300.00184 * 23 21 19 27 27 C 1.45121 * 118.75799 * 179.97438 * 10 8 7 28 28 H 1.08999 * 109.47005 * 90.02956 * 1 2 3 29 29 H 1.08998 * 109.47692 * 210.03220 * 1 2 3 30 30 H 1.09005 * 109.47359 * 330.02895 * 1 2 3 31 31 H 1.09002 * 109.47152 * 0.02562 * 6 5 4 32 32 H 1.09001 * 109.46980 * 240.02519 * 6 5 4 33 33 H 1.09004 * 109.47113 * 120.02499 * 6 5 4 34 34 H 1.09007 * 109.16473 * 258.77206 * 11 10 8 35 35 H 1.09003 * 109.16648 * 17.96619 * 11 10 8 36 36 H 1.08999 * 109.45889 * 200.17382 * 12 11 10 37 37 H 1.09009 * 109.27557 * 80.32474 * 12 11 10 38 38 H 1.09003 * 109.58957 * 331.51176 * 13 12 11 39 39 H 1.09001 * 109.59044 * 211.07472 * 13 12 11 40 40 H 1.08995 * 109.46833 * 184.98905 * 17 15 14 41 41 H 1.08999 * 109.47010 * 304.98718 * 17 15 14 42 42 H 0.97002 * 119.99620 * 0.02562 * 18 17 15 43 43 H 0.97011 * 119.99596 * 180.02562 * 22 21 19 44 44 H 1.09010 * 109.45951 * 29.31505 * 27 10 8 45 45 H 1.09001 * 109.46384 * 149.27167 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0019 0.0018 6 6 4.6677 -2.0672 0.0023 7 6 2.2351 -1.1868 -0.0037 8 6 1.6036 -2.5180 -0.0101 9 8 1.3391 -3.0706 1.0404 10 7 1.3189 -3.1232 -1.1802 11 6 1.6460 -2.4255 -2.4381 12 6 2.2453 -3.4024 -3.4658 13 6 3.1818 -4.3680 -2.7681 14 8 2.4443 -5.5190 -2.3781 15 6 1.7930 -5.5272 -1.1613 16 1 2.5094 -5.3279 -0.3645 17 6 1.1487 -6.8967 -0.9370 18 7 2.1949 -7.9159 -0.8237 19 6 1.8548 -9.2263 -0.6182 20 1 0.8152 -9.5086 -0.5400 21 6 2.8461 -10.1922 -0.5114 22 7 4.1129 -9.8482 -0.6072 23 14 2.3821 -11.9798 -0.2318 24 1 1.5388 -12.4544 -1.3582 25 1 3.6144 -12.8047 -0.1537 26 1 1.6242 -12.1015 1.0394 27 6 0.6974 -4.4343 -1.1551 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8896 0.5143 30 1 -0.3634 0.8903 0.5134 31 1 5.6511 -1.5971 0.0023 32 1 4.5616 -2.6877 -0.8876 33 1 4.5613 -2.6872 0.8925 34 1 0.7385 -1.9817 -2.8476 35 1 2.3680 -1.6353 -2.2317 36 1 2.7976 -2.8421 -4.2202 37 1 1.4400 -3.9596 -3.9448 38 1 3.6078 -3.8907 -1.8856 39 1 3.9805 -4.6596 -3.4500 40 1 0.5610 -6.8757 -0.0193 41 1 0.4990 -7.1349 -1.7791 42 1 3.1286 -7.6623 -0.8936 43 1 4.8057 -10.5233 -0.5329 44 1 0.0924 -4.5322 -0.2536 45 1 0.0621 -4.5520 -2.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202165987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:11 Heat of formation + Delta-G solvation = -19.927246 kcal Electronic energy + Delta-G solvation = -28448.413015 eV Core-core repulsion = 24593.391990 eV Total energy + Delta-G solvation = -3855.021025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07605 -39.32878 -38.03064 -35.68089 -34.62369 -33.67804 -32.84847 -30.93985 -30.22455 -29.22096 -28.13732 -26.68653 -25.32437 -23.45406 -22.35272 -21.81729 -21.03705 -20.71691 -18.79372 -18.45646 -17.21598 -17.12682 -16.67038 -16.47612 -15.73610 -15.25388 -14.96347 -14.72121 -14.48377 -14.24144 -14.02244 -13.80437 -13.65328 -13.32827 -13.14801 -13.07348 -12.91830 -12.66418 -12.60080 -12.52533 -12.32411 -12.06363 -11.74160 -11.51173 -11.41491 -11.04682 -10.95922 -10.80386 -10.75547 -10.31126 -10.12166 -9.96220 -9.68983 -9.64296 -9.45074 -8.97719 -8.82155 -8.63996 -6.84635 -5.69160 -2.97213 0.20776 0.99713 1.39085 1.80122 2.34983 2.82458 3.48977 3.52700 3.54026 3.90879 3.98402 4.23876 4.51721 4.53712 4.62762 4.68556 4.84011 4.90109 4.92573 5.01278 5.08143 5.15983 5.19582 5.28336 5.33555 5.37788 5.40620 5.46687 5.55838 5.63924 5.65217 5.68669 5.78645 5.93525 5.95832 6.06309 6.23132 6.32830 6.41812 6.65373 6.77472 7.06538 7.74726 7.92694 7.96641 8.49146 9.60677 10.18611 10.54483 11.53735 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002829 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.247547 B = 9894.981283 C =10036.424613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 N -0.468 5.468 4 S 0.280 5.720 5 C -0.133 4.133 6 C -0.092 4.092 7 C -0.213 4.213 8 C 0.584 3.416 9 O -0.516 6.516 10 N -0.598 5.598 11 C 0.108 3.892 12 C -0.166 4.166 13 C 0.072 3.928 14 O -0.367 6.367 15 C 0.089 3.911 16 H 0.052 0.948 17 C 0.166 3.834 18 N -0.726 5.726 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.080 3.920 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.254 0.746 44 H 0.096 0.904 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 24.657 -4.453 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 N -0.289 5.289 4 S 0.436 5.564 5 C -0.263 4.263 6 C -0.151 4.151 7 C -0.234 4.234 8 C 0.367 3.633 9 O -0.391 6.391 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.205 4.205 13 C -0.005 4.005 14 O -0.285 6.285 15 C 0.029 3.971 16 H 0.070 0.930 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.044 4.044 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.821 26.143 -3.993 26.508 hybrid contribution -0.670 -2.135 0.241 2.251 sum -2.491 24.007 -3.752 24.426 Atomic orbital electron populations 1.20656 0.86113 1.04549 1.03880 1.21245 0.98913 0.86814 0.95414 1.76378 1.00306 1.25895 1.26285 1.84032 1.10329 0.95105 1.66903 1.26111 0.97177 1.02703 1.00323 1.20546 0.94561 0.95220 1.04758 1.20137 0.92639 0.95868 1.14724 1.17517 0.78094 0.83674 0.83980 1.90863 1.51943 1.65243 1.31098 1.47881 1.60813 1.18754 1.05644 1.22036 1.00488 0.94832 0.84122 1.22576 1.01302 0.98346 0.98239 1.22178 0.93422 0.86662 0.98220 1.86450 1.66440 1.38434 1.37137 1.22268 0.92986 0.95838 0.86007 0.93006 1.20609 0.92206 0.85311 0.98088 1.42206 1.04272 1.03195 1.87311 1.19185 0.92489 0.84017 1.41213 0.91225 1.24728 0.95242 0.98008 1.03026 1.69666 0.98452 1.32775 1.57258 0.86259 0.76848 0.85039 0.77987 1.21306 1.21747 1.21302 1.22498 0.96743 0.80811 1.04309 0.89537 0.89825 0.89649 0.89815 0.89274 0.88840 0.91282 0.90433 0.89700 0.89720 0.93551 0.89165 0.94724 0.95437 0.77973 0.93576 0.88594 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.95 36.00 0.36 -0.41 16 2 C 0.15 1.65 6.75 -83.20 -0.56 1.09 16 3 N -0.47 -5.17 11.97 32.50 0.39 -4.78 16 4 S 0.28 2.56 23.69 -107.50 -2.55 0.01 16 5 C -0.13 -1.33 6.28 -34.43 -0.22 -1.55 16 6 C -0.09 -0.81 10.09 36.01 0.36 -0.45 16 7 C -0.21 -2.45 3.62 -105.95 -0.38 -2.83 16 8 C 0.58 7.85 5.80 -12.56 -0.07 7.78 16 9 O -0.52 -9.00 16.53 5.27 0.09 -8.92 16 10 N -0.60 -7.06 2.18 -173.57 -0.38 -7.44 16 11 C 0.11 0.96 6.07 -3.00 -0.02 0.94 16 12 C -0.17 -1.51 5.79 -26.98 -0.16 -1.67 16 13 C 0.07 0.88 6.38 36.41 0.23 1.11 16 14 O -0.37 -6.22 9.38 -26.52 -0.25 -6.47 16 15 C 0.09 1.53 2.67 -25.81 -0.07 1.46 16 16 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 17 C 0.17 3.46 5.92 -4.04 -0.02 3.44 16 18 N -0.73 -19.15 5.54 -59.91 -0.33 -19.48 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 23 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.08 1.08 4.86 -3.86 -0.02 1.06 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.78 7.40 -51.93 -0.38 0.39 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.78 6.00 -51.93 -0.31 0.46 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.65 6.04 -51.93 -0.31 0.34 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.84 8.01 -51.92 -0.42 0.42 16 38 H 0.05 0.56 5.26 -51.93 -0.27 0.28 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.39 10.84 7.65 -40.82 -0.31 10.52 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.10 1.38 7.27 -51.92 -0.38 1.00 16 45 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -34.77 376.20 -9.05 -43.83 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.58 Total: 5.40 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.81 Total: 2.47 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.40 Total: -59.80 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.16 Total: -15.38 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.55 Total: 0.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.77 -9.05 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202165987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.901 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds