Wall clock time and date at job start Tue Mar 31 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29518 * 121.53391 * 2 1 4 4 S 1.69485 * 107.84610 * 179.97438 * 3 2 1 5 5 C 1.72017 * 96.02472 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.31653 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36778 * 0.22495 * 5 4 3 8 8 C 1.47340 * 123.08694 * 179.75018 * 7 5 4 9 9 O 1.21608 * 119.99966 * 90.00391 * 8 7 5 10 10 N 1.34777 * 120.00009 * 270.00022 * 8 7 5 11 11 C 1.47511 * 118.75771 * 359.73650 * 10 8 7 12 12 C 1.53943 * 110.82153 * 138.25151 * 11 10 8 13 13 C 1.51529 * 109.72889 * 320.30572 * 12 11 10 14 14 O 1.42155 * 108.76661 * 91.29204 * 13 12 11 15 15 C 1.38012 * 119.44174 * 272.78395 * 14 13 12 16 16 H 1.08994 * 109.46780 * 303.42705 * 15 14 13 17 17 C 1.53003 * 109.47229 * 183.42989 * 15 14 13 18 18 N 1.46497 * 109.46947 * 64.98757 * 17 15 14 19 19 C 1.36931 * 119.99887 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00225 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00063 * 179.97438 * 19 18 17 22 22 N 1.31613 * 119.99484 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99948 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47320 * 59.99976 * 23 21 19 25 25 H 1.48496 * 109.47343 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47307 * 300.00184 * 23 21 19 27 27 C 1.45121 * 118.75799 * 179.97438 * 10 8 7 28 28 H 1.08999 * 109.47005 * 90.02956 * 1 2 3 29 29 H 1.08998 * 109.47692 * 210.03220 * 1 2 3 30 30 H 1.09005 * 109.47359 * 330.02895 * 1 2 3 31 31 H 1.09002 * 109.47152 * 0.02562 * 6 5 4 32 32 H 1.09001 * 109.46980 * 240.02519 * 6 5 4 33 33 H 1.09004 * 109.47113 * 120.02499 * 6 5 4 34 34 H 1.09007 * 109.16473 * 258.77206 * 11 10 8 35 35 H 1.09003 * 109.16648 * 17.96619 * 11 10 8 36 36 H 1.08999 * 109.45889 * 200.17382 * 12 11 10 37 37 H 1.09009 * 109.27557 * 80.32474 * 12 11 10 38 38 H 1.09003 * 109.58957 * 331.51176 * 13 12 11 39 39 H 1.09001 * 109.59044 * 211.07472 * 13 12 11 40 40 H 1.08995 * 109.46833 * 184.98905 * 17 15 14 41 41 H 1.08999 * 109.47010 * 304.98718 * 17 15 14 42 42 H 0.97002 * 119.99620 * 0.02562 * 18 17 15 43 43 H 0.97011 * 119.99596 * 180.02562 * 22 21 19 44 44 H 1.09010 * 109.45951 * 29.31505 * 27 10 8 45 45 H 1.09001 * 109.46384 * 149.27167 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0019 0.0018 6 6 4.6677 -2.0672 0.0023 7 6 2.2351 -1.1868 -0.0037 8 6 1.6036 -2.5180 -0.0101 9 8 1.3391 -3.0706 1.0404 10 7 1.3189 -3.1232 -1.1802 11 6 1.6460 -2.4255 -2.4381 12 6 2.2453 -3.4024 -3.4658 13 6 3.1818 -4.3680 -2.7681 14 8 2.4443 -5.5190 -2.3781 15 6 1.7930 -5.5272 -1.1613 16 1 2.5094 -5.3279 -0.3645 17 6 1.1487 -6.8967 -0.9370 18 7 2.1949 -7.9159 -0.8237 19 6 1.8548 -9.2263 -0.6182 20 1 0.8152 -9.5086 -0.5400 21 6 2.8461 -10.1922 -0.5114 22 7 4.1129 -9.8482 -0.6072 23 14 2.3821 -11.9798 -0.2318 24 1 1.5388 -12.4544 -1.3582 25 1 3.6144 -12.8047 -0.1537 26 1 1.6242 -12.1015 1.0394 27 6 0.6974 -4.4343 -1.1551 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8896 0.5143 30 1 -0.3634 0.8903 0.5134 31 1 5.6511 -1.5971 0.0023 32 1 4.5616 -2.6877 -0.8876 33 1 4.5613 -2.6872 0.8925 34 1 0.7385 -1.9817 -2.8476 35 1 2.3680 -1.6353 -2.2317 36 1 2.7976 -2.8421 -4.2202 37 1 1.4400 -3.9596 -3.9448 38 1 3.6078 -3.8907 -1.8856 39 1 3.9805 -4.6596 -3.4500 40 1 0.5610 -6.8757 -0.0193 41 1 0.4990 -7.1349 -1.7791 42 1 3.1286 -7.6623 -0.8936 43 1 4.8057 -10.5233 -0.5329 44 1 0.0924 -4.5322 -0.2536 45 1 0.0621 -4.5520 -2.0330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202165987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:10 Heat of formation + Delta-G solvation = -43.427839 kcal Electronic energy + Delta-G solvation = -28449.432077 eV Core-core repulsion = 24593.391990 eV Total energy + Delta-G solvation = -3856.040087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06906 -40.35836 -39.08934 -36.92874 -36.25798 -34.56600 -34.18688 -32.66812 -31.11208 -30.28565 -29.19886 -27.74936 -26.75555 -24.99501 -23.57747 -22.84108 -22.33730 -21.63721 -19.69072 -19.32744 -19.18523 -18.13296 -17.84285 -17.62727 -16.89551 -16.61366 -16.06179 -15.82785 -15.74974 -15.23368 -15.15542 -14.92043 -14.83083 -14.57236 -14.42176 -14.22872 -13.89112 -13.72374 -13.61143 -13.34914 -13.27425 -13.20847 -13.10038 -12.72334 -12.66145 -12.41725 -12.26863 -12.17738 -11.98867 -11.85023 -11.81026 -11.44089 -11.08825 -10.95302 -10.59076 -10.47426 -9.77368 -9.69439 -8.99686 -7.92861 -5.22202 -0.59173 0.22333 0.61977 0.98639 1.33309 1.47704 1.51917 1.57714 1.86966 2.57532 2.71703 3.23568 3.35953 3.40716 3.60461 3.76718 3.79469 3.94760 4.05333 4.07536 4.13545 4.22766 4.23537 4.27205 4.36986 4.42811 4.52410 4.55040 4.56976 4.63193 4.68883 4.70236 4.80828 4.89100 4.94448 5.04427 5.08826 5.11712 5.18004 5.43495 5.46733 5.48920 6.09900 6.27721 6.74022 6.91353 7.34223 8.08583 8.33530 9.30774 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019696 B = 0.002829 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.247547 B = 9894.981283 C =10036.424613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.153 3.847 3 N -0.490 5.490 4 S 0.325 5.675 5 C -0.134 4.134 6 C -0.094 4.094 7 C -0.231 4.231 8 C 0.587 3.413 9 O -0.567 6.567 10 N -0.592 5.592 11 C 0.105 3.895 12 C -0.155 4.155 13 C 0.062 3.938 14 O -0.394 6.394 15 C 0.106 3.894 16 H 0.022 0.978 17 C 0.162 3.838 18 N -0.740 5.740 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.978 3.022 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.092 3.908 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.085 0.915 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 26.240 -5.920 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 N -0.312 5.312 4 S 0.482 5.518 5 C -0.265 4.265 6 C -0.152 4.152 7 C -0.251 4.251 8 C 0.373 3.627 9 O -0.445 6.445 10 N -0.323 5.323 11 C -0.016 4.016 12 C -0.193 4.193 13 C -0.014 4.014 14 O -0.313 6.313 15 C 0.045 3.955 16 H 0.039 0.961 17 C 0.035 3.965 18 N -0.383 5.383 19 C -0.380 4.380 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.032 4.032 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.440 27.771 -5.499 28.415 hybrid contribution -0.421 -2.535 0.667 2.655 sum -2.861 25.236 -4.832 25.853 Atomic orbital electron populations 1.20719 0.84928 1.04286 1.05180 1.21403 0.99797 0.86296 0.94963 1.76305 1.01514 1.26239 1.27099 1.83864 1.08968 0.93392 1.65588 1.26333 0.96958 1.03897 0.99305 1.20601 0.95741 0.95012 1.03839 1.20048 0.93242 0.95044 1.16809 1.17797 0.77241 0.84148 0.83550 1.90834 1.54095 1.66681 1.32927 1.47922 1.59905 1.17894 1.06550 1.22300 1.02061 0.94672 0.82580 1.22495 1.00706 0.97691 0.98433 1.22472 0.94148 0.86113 0.98627 1.86373 1.67169 1.41293 1.36463 1.21862 0.93254 0.94879 0.85467 0.96050 1.20757 0.91343 0.86237 0.98140 1.42409 1.04770 1.03727 1.87344 1.19641 0.92928 0.85255 1.40156 0.90430 1.25617 0.95216 1.02481 1.03571 1.69838 0.99437 1.33901 1.58858 0.85156 0.76449 0.79538 0.78273 1.20164 1.22059 1.20391 1.22231 0.95433 0.80659 1.04862 0.87405 0.91077 0.88838 0.87112 0.89220 0.90708 0.88637 0.89475 0.86416 0.90005 0.93645 0.88422 0.94629 0.94763 0.79494 0.94030 0.89656 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.95 71.23 0.71 -0.68 16 2 C 0.15 3.05 6.75 43.14 0.29 3.34 16 3 N -0.49 -9.91 11.97 -51.08 -0.61 -10.52 16 4 S 0.33 5.26 23.69 -56.49 -1.34 3.92 16 5 C -0.13 -2.53 6.28 25.61 0.16 -2.37 16 6 C -0.09 -1.58 10.09 71.24 0.72 -0.86 16 7 C -0.23 -5.08 3.62 -20.72 -0.07 -5.16 16 8 C 0.59 15.77 5.80 86.64 0.50 16.27 16 9 O -0.57 -20.52 16.53 -4.06 -0.07 -20.59 16 10 N -0.59 -13.38 2.18 -821.30 -1.79 -15.17 16 11 C 0.10 1.57 6.07 86.50 0.53 2.09 16 12 C -0.16 -2.37 5.79 30.43 0.18 -2.20 16 13 C 0.06 1.46 6.38 71.50 0.46 1.91 16 14 O -0.39 -13.40 9.38 -117.82 -1.11 -14.51 16 15 C 0.11 3.71 2.67 31.19 0.08 3.80 16 16 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 17 C 0.16 6.91 5.92 86.38 0.51 7.42 16 18 N -0.74 -40.17 5.54 -343.46 -1.90 -42.07 16 19 C -0.25 -14.46 9.99 84.04 0.84 -13.63 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.56 5.50 84.87 0.47 -4.09 16 22 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 23 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 C 0.09 2.47 4.86 87.23 0.42 2.89 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.29 7.40 -2.39 -0.02 1.27 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.50 6.00 -2.39 -0.01 1.49 16 33 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.09 1.19 6.04 -2.39 -0.01 1.18 16 36 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.37 8.01 -2.38 -0.02 1.35 16 38 H 0.05 1.07 5.26 -2.39 -0.01 1.06 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.37 21.81 7.65 -92.71 -0.71 21.10 16 43 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 44 H 0.09 2.49 7.27 -2.38 -0.02 2.48 16 45 H 0.11 2.44 8.11 -2.39 -0.02 2.42 16 Total: -1.00 -77.07 376.20 1.59 -75.48 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.31 Total: 26.38 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.79 Total: 8.75 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -4.02 Total: -128.74 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.17 Total: -35.10 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.34 Total: 3.92 kcal Total: -77.07 1.59 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202165987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.048 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds