Wall clock time and date at job start Tue Mar 31 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 128.00641 * 2 1 4 4 O 1.34037 * 106.44460 * 180.02562 * 3 2 1 5 5 N 1.20917 * 111.56862 * 359.70512 * 4 3 2 6 6 C 1.30169 * 111.60381 * 0.48759 * 5 4 3 7 7 C 1.50701 * 126.80612 * 179.79673 * 6 5 4 8 8 N 1.46904 * 109.47123 * 94.80187 * 7 6 5 9 9 C 1.48531 * 110.99889 * 184.28040 * 8 7 6 10 10 C 1.54939 * 103.22718 * 159.72308 * 9 8 7 11 11 H 1.09002 * 110.72094 * 80.94108 * 10 9 8 12 12 C 1.52995 * 110.88072 * 204.15823 * 10 9 8 13 13 C 1.54597 * 102.92043 * 322.59080 * 10 9 8 14 14 H 1.09001 * 110.30846 * 262.93356 * 13 10 9 15 15 N 1.46505 * 110.31003 * 140.87318 * 13 10 9 16 16 C 1.34771 * 120.00407 * 156.38715 * 15 13 10 17 17 O 1.21284 * 119.99688 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00126 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46829 * 180.02562 * 18 16 15 20 20 C 1.76207 * 100.00021 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99298 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00341 * 179.72620 * 20 19 18 23 23 N 1.31626 * 119.99746 * 0.27018 * 22 20 19 24 24 Si 1.86799 * 120.00048 * 180.27147 * 22 20 19 25 25 H 1.48495 * 109.46970 * 90.00047 * 24 22 20 26 26 H 1.48494 * 109.46901 * 209.99774 * 24 22 20 27 27 H 1.48498 * 109.47207 * 330.00139 * 24 22 20 28 28 C 1.48122 * 110.95581 * 301.65620 * 8 7 6 29 29 H 1.08999 * 109.47307 * 274.93811 * 1 2 3 30 30 H 1.09001 * 109.47318 * 34.94320 * 1 2 3 31 31 H 1.08998 * 109.46986 * 154.93371 * 1 2 3 32 32 H 1.08004 * 126.77704 * 0.05007 * 3 2 1 33 33 H 1.08999 * 109.46716 * 334.80918 * 7 6 5 34 34 H 1.08997 * 109.47786 * 214.80931 * 7 6 5 35 35 H 1.09000 * 110.66746 * 41.28971 * 9 8 7 36 36 H 1.09001 * 110.81764 * 278.22829 * 9 8 7 37 37 H 1.08997 * 109.47135 * 173.59159 * 12 10 9 38 38 H 1.09001 * 109.46836 * 293.59076 * 12 10 9 39 39 H 1.08998 * 109.47066 * 53.58794 * 12 10 9 40 40 H 0.96999 * 119.99375 * 336.38492 * 15 13 10 41 41 H 1.08997 * 109.47084 * 60.00388 * 18 16 15 42 42 H 1.08994 * 109.47673 * 300.00062 * 18 16 15 43 43 H 0.97003 * 119.99942 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.95101 * 94.79317 * 28 8 7 45 45 H 1.09003 * 109.99621 * 333.43076 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0049 6 6 2.3776 -1.1139 -0.0005 7 6 1.9826 -2.5683 -0.0007 8 7 1.7356 -3.0088 1.3787 9 6 1.4434 -4.4642 1.4285 10 6 1.7351 -4.8341 2.9045 11 1 0.8901 -4.5733 3.5417 12 6 2.0727 -6.3204 3.0376 13 6 2.9654 -3.9612 3.2429 14 1 3.8820 -4.5409 3.1339 15 7 2.8564 -3.4356 4.6061 16 6 3.9659 -3.0692 5.2778 17 8 5.0546 -3.1750 4.7539 18 6 3.8537 -2.5280 6.6797 19 16 5.5042 -2.1287 7.3061 20 6 5.0869 -1.5362 8.9123 21 1 4.0538 -1.5084 9.2259 22 6 6.0862 -1.1102 9.7762 23 7 7.3452 -1.1438 9.3937 24 14 5.6443 -0.4892 11.4817 25 1 5.6458 -1.6254 12.4378 26 1 6.6416 0.5226 11.9137 27 1 4.2944 0.1286 11.4491 28 6 2.9369 -2.8089 2.2219 29 1 -0.3634 0.0885 1.0238 30 1 -0.3634 0.8424 -0.5886 31 1 -0.3633 -0.9309 -0.4354 32 1 2.0576 2.1095 0.0008 33 1 2.7870 -3.1631 -0.4334 34 1 1.0761 -2.6986 -0.5917 35 1 2.1039 -5.0124 0.7567 36 1 0.3994 -4.6583 1.1824 37 1 2.3838 -6.5321 4.0606 38 1 1.1926 -6.9160 2.7949 39 1 2.8820 -6.5720 2.3523 40 1 1.9857 -3.3513 5.0251 41 1 3.3922 -3.2774 7.3226 42 1 3.2401 -1.6271 6.6735 43 1 8.0436 -0.8457 9.9974 44 1 2.8714 -1.8533 2.7421 45 1 3.8347 -2.8377 1.6044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206096029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:02 Heat of formation + Delta-G solvation = 27.406238 kcal Electronic energy + Delta-G solvation = -26915.427285 eV Core-core repulsion = 23062.458794 eV Total energy + Delta-G solvation = -3852.968491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.10276 -40.11668 -38.43395 -35.79815 -34.14684 -32.97868 -32.41100 -32.03420 -29.98503 -28.51550 -28.18094 -27.22831 -25.48679 -24.83429 -22.26094 -21.67992 -21.28937 -20.39028 -20.02524 -17.83813 -17.72996 -17.51563 -16.85182 -16.29668 -15.84333 -15.32229 -15.14490 -14.78830 -14.76747 -14.18176 -13.93978 -13.82996 -13.55020 -13.44786 -13.29642 -13.13702 -12.84626 -12.61977 -12.53209 -12.44394 -12.24610 -12.06746 -11.77381 -11.36928 -11.29592 -11.20061 -11.04971 -11.01143 -10.93310 -10.73737 -10.18694 -9.79620 -9.54019 -9.36736 -9.05398 -8.89042 -8.75142 -8.21111 -6.47765 -6.19797 -3.90198 1.33370 1.95756 3.04809 3.10158 3.10466 3.23507 3.29052 3.33391 3.64322 3.73955 3.94114 4.20069 4.22156 4.30896 4.45514 4.63918 4.74216 4.85378 4.98190 5.09497 5.14579 5.15303 5.16749 5.21392 5.25522 5.31903 5.32853 5.42275 5.46930 5.53137 5.56789 5.60573 5.62423 5.78317 5.87045 5.90386 5.93104 5.94860 5.99264 6.16271 6.50868 6.61867 6.70158 7.61230 7.74344 8.10555 8.36998 8.64259 9.25385 10.87650 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.002668 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.129353 B =10492.731471 C =11949.129607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.186 4.186 3 C -0.069 4.069 4 O 0.106 5.894 5 N -0.355 5.355 6 C 0.018 3.982 7 C 0.126 3.874 8 N -0.508 5.508 9 C 0.040 3.960 10 C -0.099 4.099 11 H 0.090 0.910 12 C -0.144 4.144 13 C 0.143 3.857 14 H 0.096 0.904 15 N -0.728 5.728 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.028 3.972 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.215 0.785 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.082 0.918 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 -3.050 -21.154 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.190 4.190 3 C -0.150 4.150 4 O 0.038 5.962 5 N -0.057 5.057 6 C -0.141 4.141 7 C -0.002 4.002 8 N -0.233 5.233 9 C -0.087 4.087 10 C -0.119 4.119 11 H 0.109 0.891 12 C -0.201 4.201 13 C 0.037 3.963 14 H 0.114 0.886 15 N -0.382 5.382 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.100 -3.439 -21.799 27.317 hybrid contribution -2.048 0.500 1.593 2.642 sum -18.149 -2.939 -20.206 27.318 Atomic orbital electron populations 1.20045 0.87313 1.02724 1.02823 1.21265 0.98706 0.91353 1.07674 1.25780 0.83207 1.01217 1.04806 1.84844 1.29105 1.15403 1.66889 1.73907 1.22318 0.91471 1.18025 1.23238 0.88615 0.98090 1.04171 1.20486 1.00949 0.87487 0.91310 1.64950 1.34461 1.15921 1.08012 1.23299 1.01797 0.87520 0.96123 1.22342 0.97741 0.95453 0.96314 0.89143 1.21776 1.01607 0.94059 1.02697 1.21782 0.99161 0.93431 0.81976 0.88623 1.46058 1.09669 1.67458 1.15051 1.20352 0.83830 0.76684 0.87356 1.90707 1.26789 1.52310 1.69228 1.23525 1.08349 1.03456 0.95015 1.85415 0.99556 1.82827 1.15533 1.22870 0.95890 1.49584 1.00007 0.90952 1.24992 0.94450 0.95209 0.98952 1.70021 0.99357 1.44555 1.36357 0.86167 0.78329 0.78583 0.82419 1.20284 1.20754 1.19687 1.23398 0.91383 1.00083 0.95268 0.90601 0.91394 0.91115 0.76888 0.92780 0.88434 0.93085 0.89364 0.91813 0.92134 0.92385 0.76678 0.89241 0.89277 0.92196 0.89925 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.37 36.01 0.37 -0.08 16 2 C -0.19 -1.72 6.32 -104.42 -0.66 -2.38 16 3 C -0.07 -0.60 12.26 29.74 0.36 -0.23 16 4 O 0.11 1.29 11.20 17.19 0.19 1.48 16 5 N -0.35 -4.85 11.96 33.42 0.40 -4.45 16 6 C 0.02 0.21 5.88 -82.10 -0.48 -0.28 16 7 C 0.13 1.19 5.32 -4.97 -0.03 1.17 16 8 N -0.51 -5.13 5.35 -231.70 -1.24 -6.37 16 9 C 0.04 0.32 6.01 -1.90 -0.01 0.31 16 10 C -0.10 -0.87 3.36 -88.76 -0.30 -1.16 16 11 H 0.09 0.74 7.75 -51.93 -0.40 0.33 16 12 C -0.14 -1.14 9.17 37.16 0.34 -0.79 16 13 C 0.14 1.80 2.89 -66.57 -0.19 1.60 16 14 H 0.10 1.40 7.31 -51.93 -0.38 1.02 16 15 N -0.73 -10.15 5.02 -52.49 -0.26 -10.42 16 16 C 0.53 10.21 7.85 -10.99 -0.09 10.12 16 17 O -0.52 -12.08 15.54 5.55 0.09 -11.99 16 18 C -0.15 -3.16 6.16 36.00 0.22 -2.93 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.03 0.36 5.57 -2.63 -0.01 0.35 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.40 7.69 -51.93 -0.40 0.00 16 32 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.10 0.69 7.71 -51.93 -0.40 0.29 16 35 H 0.05 0.39 7.83 -51.93 -0.41 -0.02 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 40 H 0.40 4.44 8.36 -40.82 -0.34 4.10 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 45 H 0.06 0.85 7.65 -51.93 -0.40 0.45 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -36.33 389.35 -8.63 -44.97 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.90 Total: 1.41 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.27 Total: -7.45 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.37 Total: -47.01 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.28 Total: -10.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.33 -8.63 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206096029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.373 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds