Wall clock time and date at job start Tue Mar 31 2020 22:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 128.00641 * 2 1 4 4 O 1.34037 * 106.44460 * 180.02562 * 3 2 1 5 5 N 1.20917 * 111.56862 * 359.70512 * 4 3 2 6 6 C 1.30169 * 111.60381 * 0.48759 * 5 4 3 7 7 C 1.50701 * 126.80612 * 179.79673 * 6 5 4 8 8 N 1.46904 * 109.47123 * 94.80187 * 7 6 5 9 9 C 1.48531 * 110.99889 * 184.28040 * 8 7 6 10 10 C 1.54939 * 103.22718 * 159.72308 * 9 8 7 11 11 H 1.09002 * 110.72094 * 80.94108 * 10 9 8 12 12 C 1.52995 * 110.88072 * 204.15823 * 10 9 8 13 13 C 1.54597 * 102.92043 * 322.59080 * 10 9 8 14 14 H 1.09001 * 110.30846 * 262.93356 * 13 10 9 15 15 N 1.46505 * 110.31003 * 140.87318 * 13 10 9 16 16 C 1.34771 * 120.00407 * 156.38715 * 15 13 10 17 17 O 1.21284 * 119.99688 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00126 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46829 * 180.02562 * 18 16 15 20 20 C 1.76207 * 100.00021 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99298 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00341 * 179.72620 * 20 19 18 23 23 N 1.31626 * 119.99746 * 0.27018 * 22 20 19 24 24 Si 1.86799 * 120.00048 * 180.27147 * 22 20 19 25 25 H 1.48495 * 109.46970 * 90.00047 * 24 22 20 26 26 H 1.48494 * 109.46901 * 209.99774 * 24 22 20 27 27 H 1.48498 * 109.47207 * 330.00139 * 24 22 20 28 28 C 1.48122 * 110.95581 * 301.65620 * 8 7 6 29 29 H 1.08999 * 109.47307 * 274.93811 * 1 2 3 30 30 H 1.09001 * 109.47318 * 34.94320 * 1 2 3 31 31 H 1.08998 * 109.46986 * 154.93371 * 1 2 3 32 32 H 1.08004 * 126.77704 * 0.05007 * 3 2 1 33 33 H 1.08999 * 109.46716 * 334.80918 * 7 6 5 34 34 H 1.08997 * 109.47786 * 214.80931 * 7 6 5 35 35 H 1.09000 * 110.66746 * 41.28971 * 9 8 7 36 36 H 1.09001 * 110.81764 * 278.22829 * 9 8 7 37 37 H 1.08997 * 109.47135 * 173.59159 * 12 10 9 38 38 H 1.09001 * 109.46836 * 293.59076 * 12 10 9 39 39 H 1.08998 * 109.47066 * 53.58794 * 12 10 9 40 40 H 0.96999 * 119.99375 * 336.38492 * 15 13 10 41 41 H 1.08997 * 109.47084 * 60.00388 * 18 16 15 42 42 H 1.08994 * 109.47673 * 300.00062 * 18 16 15 43 43 H 0.97003 * 119.99942 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.95101 * 94.79317 * 28 8 7 45 45 H 1.09003 * 109.99621 * 333.43076 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0049 6 6 2.3776 -1.1139 -0.0005 7 6 1.9826 -2.5683 -0.0007 8 7 1.7356 -3.0088 1.3787 9 6 1.4434 -4.4642 1.4285 10 6 1.7351 -4.8341 2.9045 11 1 0.8901 -4.5733 3.5417 12 6 2.0727 -6.3204 3.0376 13 6 2.9654 -3.9612 3.2429 14 1 3.8820 -4.5409 3.1339 15 7 2.8564 -3.4356 4.6061 16 6 3.9659 -3.0692 5.2778 17 8 5.0546 -3.1750 4.7539 18 6 3.8537 -2.5280 6.6797 19 16 5.5042 -2.1287 7.3061 20 6 5.0869 -1.5362 8.9123 21 1 4.0538 -1.5084 9.2259 22 6 6.0862 -1.1102 9.7762 23 7 7.3452 -1.1438 9.3937 24 14 5.6443 -0.4892 11.4817 25 1 5.6458 -1.6254 12.4378 26 1 6.6416 0.5226 11.9137 27 1 4.2944 0.1286 11.4491 28 6 2.9369 -2.8089 2.2219 29 1 -0.3634 0.0885 1.0238 30 1 -0.3634 0.8424 -0.5886 31 1 -0.3633 -0.9309 -0.4354 32 1 2.0576 2.1095 0.0008 33 1 2.7870 -3.1631 -0.4334 34 1 1.0761 -2.6986 -0.5917 35 1 2.1039 -5.0124 0.7567 36 1 0.3994 -4.6583 1.1824 37 1 2.3838 -6.5321 4.0606 38 1 1.1926 -6.9160 2.7949 39 1 2.8820 -6.5720 2.3523 40 1 1.9857 -3.3513 5.0251 41 1 3.3922 -3.2774 7.3226 42 1 3.2401 -1.6271 6.6735 43 1 8.0436 -0.8457 9.9974 44 1 2.8714 -1.8533 2.7421 45 1 3.8347 -2.8377 1.6044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206096029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:01 Heat of formation + Delta-G solvation = 0.193248 kcal Electronic energy + Delta-G solvation = -26916.607329 eV Core-core repulsion = 23062.458794 eV Total energy + Delta-G solvation = -3854.148535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.92686 -41.26274 -39.71544 -36.67332 -35.19752 -34.60139 -33.90212 -32.85893 -31.38086 -29.52561 -28.94506 -28.06716 -27.65469 -25.71353 -23.21772 -22.46960 -22.18715 -21.33523 -21.28383 -19.79982 -18.63449 -18.31318 -17.99075 -17.77912 -16.89610 -16.85826 -16.32818 -16.24858 -16.03985 -15.75214 -14.94919 -14.74802 -14.58949 -14.44220 -14.22634 -14.05836 -13.99768 -13.78197 -13.43740 -13.28400 -13.18569 -13.12739 -13.09113 -12.89962 -12.65404 -12.62367 -12.34157 -12.03966 -11.93235 -11.78330 -11.68510 -11.15653 -11.02989 -10.98867 -10.30054 -10.24473 -10.18792 -9.61618 -8.69518 -8.35993 -6.14922 0.58224 1.20288 1.24622 1.41869 1.45269 1.54637 1.56372 2.21135 2.26408 2.43874 2.86693 2.98124 3.15541 3.29830 3.44376 3.49848 3.61223 3.89909 3.96428 4.04961 4.09043 4.20587 4.26217 4.27785 4.39905 4.45302 4.46339 4.52077 4.62296 4.73996 4.77214 4.81330 4.82301 4.90019 4.93279 5.01437 5.05767 5.15565 5.30727 5.40071 5.41359 5.46895 5.62707 5.82690 6.18333 6.45854 7.04921 7.19793 7.32398 8.73411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.002668 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.129353 B =10492.731471 C =11949.129607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.194 4.194 3 C -0.066 4.066 4 O 0.081 5.919 5 N -0.402 5.402 6 C 0.006 3.994 7 C 0.126 3.874 8 N -0.502 5.502 9 C 0.043 3.957 10 C -0.086 4.086 11 H 0.108 0.892 12 C -0.141 4.141 13 C 0.139 3.861 14 H 0.070 0.930 15 N -0.701 5.701 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.127 4.127 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.040 3.960 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.045 0.955 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.417 0.583 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.052 0.948 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.263 -3.279 -21.045 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.198 4.198 3 C -0.146 4.146 4 O 0.016 5.984 5 N -0.109 5.109 6 C -0.152 4.152 7 C -0.003 4.003 8 N -0.227 5.227 9 C -0.084 4.084 10 C -0.105 4.105 11 H 0.126 0.874 12 C -0.199 4.199 13 C 0.033 3.967 14 H 0.089 0.911 15 N -0.355 5.355 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.279 4.279 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.270 0.730 33 H 0.064 0.936 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -20.511 -3.670 -21.713 30.094 hybrid contribution -0.782 0.555 1.427 1.719 sum -21.293 -3.115 -20.286 29.574 Atomic orbital electron populations 1.20132 0.84880 1.04229 1.03220 1.21718 1.00240 0.90500 1.07360 1.26623 0.81920 1.03017 1.03088 1.84778 1.30971 1.15121 1.67519 1.73908 1.24188 0.92335 1.20455 1.23743 0.88573 0.99563 1.03359 1.20649 1.02108 0.86401 0.91095 1.64973 1.31963 1.17708 1.08042 1.23454 1.03823 0.85773 0.95386 1.22351 0.95838 0.95104 0.97254 0.87384 1.21767 1.02632 0.93604 1.01880 1.21925 1.00464 0.93694 0.80644 0.91145 1.45790 1.09012 1.65427 1.15285 1.20159 0.84320 0.76592 0.87012 1.90698 1.28957 1.54726 1.70102 1.23354 1.03583 1.04960 0.95971 1.85633 1.06519 1.83517 1.17010 1.23202 0.96566 1.49654 0.99953 0.89831 1.26167 0.94142 0.95099 1.03848 1.70193 1.00760 1.45691 1.38234 0.84922 0.78600 0.78137 0.76124 1.19187 1.20305 1.18082 1.23081 0.91814 0.98677 0.95347 0.90708 0.89281 0.90159 0.73007 0.93641 0.85165 0.92611 0.86031 0.93045 0.89455 0.92915 0.74502 0.86896 0.87456 0.91983 0.92936 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.37 71.24 0.74 0.08 16 2 C -0.19 -3.35 6.32 -19.74 -0.12 -3.47 16 3 C -0.07 -1.10 12.26 67.18 0.82 -0.28 16 4 O 0.08 2.06 11.20 71.67 0.80 2.87 16 5 N -0.40 -11.69 11.96 -49.58 -0.59 -12.28 16 6 C 0.01 0.15 5.88 43.58 0.26 0.40 16 7 C 0.13 2.24 5.32 85.56 0.46 2.69 16 8 N -0.50 -9.36 5.35 -886.97 -4.75 -14.10 16 9 C 0.04 0.54 6.01 86.65 0.52 1.06 16 10 C -0.09 -1.29 3.36 -9.59 -0.03 -1.32 16 11 H 0.11 1.31 7.75 -2.39 -0.02 1.29 16 12 C -0.14 -1.89 9.17 71.98 0.66 -1.23 16 13 C 0.14 3.47 2.89 45.87 0.13 3.61 16 14 H 0.07 2.17 7.31 -2.39 -0.02 2.15 16 15 N -0.70 -19.12 5.02 -438.38 -2.20 -21.32 16 16 C 0.53 20.84 7.85 87.66 0.69 21.52 16 17 O -0.57 -27.93 15.54 -3.04 -0.05 -27.98 16 18 C -0.13 -5.25 6.16 71.23 0.44 -4.81 16 19 S -0.15 -8.82 20.57 -56.49 -1.16 -9.98 16 20 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 21 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.10 13.22 21.65 0.29 -56.82 16 24 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 28 C 0.04 1.10 5.57 86.40 0.48 1.58 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.63 7.69 -2.39 -0.02 0.61 16 32 H 0.25 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 34 H 0.13 1.44 7.71 -2.39 -0.02 1.42 16 35 H 0.06 0.70 7.83 -2.39 -0.02 0.68 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.77 8.11 -2.39 -0.02 0.75 16 40 H 0.42 8.35 8.36 -92.71 -0.78 7.57 16 41 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 42 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.05 1.74 7.92 -2.39 -0.02 1.72 16 45 H 0.03 0.89 7.65 -2.39 -0.02 0.87 16 Total: -1.00 -85.24 389.35 0.74 -84.49 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.23 Total: 19.06 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 6.15 Total: -10.11 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.25 Total: -104.52 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.76 Total: -25.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -85.24 0.74 -84.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206096029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.687 kcal (2) G-P(sol) polarization free energy of solvation -85.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds