Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34044 * 126.77783 * 2 1 4 4 N 1.20914 * 111.56948 * 179.97438 * 3 2 1 5 5 C 1.30174 * 111.60637 * 359.73808 * 4 3 2 6 6 C 1.35448 * 126.78038 * 179.97438 * 2 1 3 7 7 C 1.50707 * 128.00500 * 359.97224 * 6 2 1 8 8 N 1.46894 * 109.47367 * 79.99699 * 7 6 2 9 9 C 1.46900 * 111.00217 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.49546 * 35.05758 * 9 8 7 11 11 C 1.53034 * 109.52747 * 155.14509 * 9 8 7 12 12 C 1.53346 * 109.61010 * 181.33908 * 11 9 8 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00016 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99978 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46913 * 120.00256 * 23 21 19 26 26 H 1.48504 * 109.46808 * 240.00126 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 28 28 H 1.08997 * 109.47616 * 270.00395 * 1 2 3 29 29 H 1.08995 * 109.47132 * 30.00784 * 1 2 3 30 30 H 1.09003 * 109.46940 * 149.99932 * 1 2 3 31 31 H 1.08000 * 126.80595 * 180.25207 * 5 4 3 32 32 H 1.09005 * 109.46752 * 319.99326 * 7 6 2 33 33 H 1.09002 * 109.46771 * 200.00145 * 7 6 2 34 34 H 1.00907 * 111.00097 * 56.04608 * 8 7 6 35 35 H 1.08999 * 109.45836 * 301.35330 * 11 9 8 36 36 H 1.09000 * 109.46169 * 61.30700 * 11 9 8 37 37 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 38 38 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 39 39 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 40 40 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 41 41 H 1.09003 * 109.46873 * 300.00082 * 17 15 14 42 42 H 1.09001 * 109.46886 * 59.99494 * 17 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58580 * 173.39910 * 27 14 13 45 45 H 1.09002 * 109.58042 * 293.81990 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5372 0.0064 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0017 8 7 1.5613 -2.9495 -1.3617 9 6 1.1687 -4.3646 -1.3990 10 1 0.6460 -4.6215 -0.4777 11 6 0.2456 -4.6080 -2.5950 12 6 -0.1921 -6.0775 -2.6166 13 6 1.0450 -6.9683 -2.7680 14 7 2.0023 -6.6377 -1.7037 15 6 2.4886 -7.5994 -0.8942 16 8 3.2780 -7.3136 -0.0190 17 6 2.0513 -9.0300 -1.0768 18 16 2.8735 -10.0737 0.1523 19 6 2.2004 -11.6436 -0.2800 20 1 1.4994 -11.7239 -1.0976 21 6 2.5711 -12.7771 0.4302 22 7 3.4252 -12.6791 1.4270 23 14 1.8569 -14.4413 -0.0276 24 1 0.9273 -14.2825 -1.1747 25 1 2.9566 -15.3646 -0.4065 26 1 1.1195 -15.0000 1.1341 27 6 2.4192 -5.2385 -1.5380 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 4.5528 -1.0838 0.0120 32 1 1.0678 -2.6826 0.6629 33 1 2.7591 -3.1428 0.3534 34 1 2.3156 -2.7661 -2.0064 35 1 -0.6335 -3.9692 -2.5111 36 1 0.7772 -4.3744 -3.5175 37 1 -0.8674 -6.2472 -3.4552 38 1 -0.7020 -6.3185 -1.6838 39 1 1.5048 -6.7928 -3.7405 40 1 0.7537 -8.0153 -2.6851 41 1 0.9711 -9.0989 -0.9483 42 1 2.3204 -9.3672 -2.0778 43 1 3.6839 -13.4711 1.9236 44 1 3.0328 -5.1437 -0.6421 45 1 2.9911 -4.9220 -2.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207409560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = 23.023356 kcal Electronic energy + Delta-G solvation = -26533.604947 eV Core-core repulsion = 22680.446400 eV Total energy + Delta-G solvation = -3853.158547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.20747 -40.12176 -37.94381 -36.20899 -34.15953 -33.40669 -32.46676 -32.33354 -30.61122 -29.01574 -27.91092 -25.80032 -25.60420 -25.02401 -23.01200 -22.50655 -21.25027 -20.75007 -19.12903 -17.90449 -17.72891 -17.37700 -16.81141 -16.36668 -15.62788 -15.24770 -15.10946 -14.85034 -14.83435 -14.51243 -14.27305 -13.94993 -13.67981 -13.56719 -13.49190 -13.25306 -12.99826 -12.92116 -12.65890 -12.54041 -12.41165 -11.95821 -11.58440 -11.44188 -11.17148 -11.09972 -11.06838 -11.03573 -10.88139 -10.77996 -10.60887 -9.83297 -9.54145 -9.42640 -9.10703 -9.03551 -8.41988 -8.25912 -6.53950 -6.24900 -3.95764 1.16411 1.91735 2.79275 2.86277 2.98338 3.19133 3.23071 3.28511 3.53222 3.85509 4.01584 4.16907 4.30160 4.47291 4.54458 4.59239 4.74293 4.79497 4.82109 4.99120 5.04190 5.07253 5.07378 5.10449 5.21442 5.28461 5.32635 5.37329 5.47950 5.55200 5.55864 5.57324 5.62490 5.67577 5.78709 5.79823 5.83103 5.94764 6.04470 6.07322 6.42033 6.68567 6.94802 7.48646 7.56839 7.96698 8.32195 8.49121 9.20564 10.82579 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002051 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.068467 B =13649.603807 C =14406.464148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 O 0.092 5.908 4 N -0.368 5.368 5 C -0.001 4.001 6 C -0.205 4.205 7 C 0.134 3.866 8 N -0.675 5.675 9 C 0.074 3.926 10 H 0.085 0.915 11 C -0.104 4.104 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.086 3.914 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.343 0.657 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 23.191 -8.545 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 O 0.028 5.972 4 N -0.073 5.073 5 C -0.180 4.180 6 C -0.209 4.209 7 C 0.005 3.995 8 N -0.305 5.305 9 C -0.037 4.037 10 H 0.103 0.897 11 C -0.142 4.142 12 C -0.174 4.174 13 C -0.017 4.017 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.392 6.392 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.039 4.039 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.206 0.794 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.619 24.796 -7.042 26.879 hybrid contribution -0.597 -2.650 -1.246 2.989 sum -8.216 22.146 -8.288 25.033 Atomic orbital electron populations 1.20391 0.83800 1.05118 1.03950 1.24360 0.96301 0.85598 1.01050 1.84805 1.11496 1.33313 1.67610 1.73892 0.97149 1.16819 1.19403 1.24987 0.99860 0.90352 1.02840 1.20979 0.91984 0.97148 1.10838 1.20166 1.00455 0.87845 0.91081 1.60689 1.44508 1.18247 1.07091 1.21986 0.95604 0.85882 1.00200 0.89706 1.21511 0.99390 0.95802 0.97471 1.21995 0.97456 0.94913 1.03054 1.21753 0.89183 1.00501 0.90308 1.48027 1.46111 1.06886 1.34303 1.20380 0.80191 0.86807 0.80325 1.90687 1.33544 1.82478 1.32533 1.23547 1.04964 0.94825 1.06688 1.85414 1.58570 1.00241 1.39351 1.22891 1.31492 0.92868 1.21000 0.90870 1.25002 0.94905 0.99183 0.94541 1.70026 1.30961 1.30048 1.19213 0.86113 0.78826 0.82068 0.78468 1.19595 1.20561 1.20545 1.22263 0.97186 0.81670 1.02759 0.89603 0.90019 0.88065 0.79412 0.89451 0.93061 0.83830 0.90961 0.91825 0.90321 0.91198 0.91531 0.89126 0.89207 0.89259 0.92217 0.89182 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.30 36.00 0.37 0.02 16 2 C -0.01 -0.07 7.49 -35.31 -0.26 -0.33 16 3 O 0.09 0.93 11.20 17.17 0.19 1.12 16 4 N -0.37 -4.11 12.07 30.35 0.37 -3.74 16 5 C 0.00 -0.01 12.16 -17.06 -0.21 -0.22 16 6 C -0.21 -1.72 5.84 -104.42 -0.61 -2.33 16 7 C 0.13 1.04 5.82 -4.98 -0.03 1.01 16 8 N -0.67 -4.95 6.24 -107.87 -0.67 -5.62 16 9 C 0.07 0.63 2.62 -67.60 -0.18 0.45 16 10 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 11 C -0.10 -0.76 5.50 -26.53 -0.15 -0.90 16 12 C -0.14 -1.07 6.11 -26.45 -0.16 -1.23 16 13 C 0.11 1.06 6.33 -3.71 -0.02 1.04 16 14 N -0.62 -8.22 2.97 -172.77 -0.51 -8.73 16 15 C 0.53 9.87 7.72 -10.98 -0.08 9.79 16 16 O -0.52 -11.56 15.27 5.56 0.08 -11.48 16 17 C -0.15 -2.97 4.50 36.01 0.16 -2.80 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 23 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.09 0.95 5.69 -3.71 -0.02 0.93 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 33 H 0.05 0.44 7.56 -51.93 -0.39 0.05 16 34 H 0.34 2.45 8.41 -39.29 -0.33 2.12 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 41 H 0.09 1.64 7.69 -51.92 -0.40 1.24 16 42 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 1.19 6.48 -51.93 -0.34 0.86 16 45 H 0.06 0.61 8.05 -51.93 -0.42 0.20 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -34.58 384.61 -9.01 -43.58 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.76 Total: -0.61 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.99 Total: -7.34 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.09 Total: -43.31 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.28 Total: -10.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.58 -9.01 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.608 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds