Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34044 * 126.77783 * 2 1 4 4 N 1.20914 * 111.56948 * 179.97438 * 3 2 1 5 5 C 1.30174 * 111.60637 * 359.73808 * 4 3 2 6 6 C 1.35448 * 126.78038 * 179.97438 * 2 1 3 7 7 C 1.50707 * 128.00500 * 359.97224 * 6 2 1 8 8 N 1.46894 * 109.47367 * 79.99699 * 7 6 2 9 9 C 1.46900 * 111.00217 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.49546 * 35.05758 * 9 8 7 11 11 C 1.53034 * 109.52747 * 155.14509 * 9 8 7 12 12 C 1.53346 * 109.61010 * 181.33908 * 11 9 8 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00016 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99978 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46913 * 120.00256 * 23 21 19 26 26 H 1.48504 * 109.46808 * 240.00126 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 28 28 H 1.08997 * 109.47616 * 270.00395 * 1 2 3 29 29 H 1.08995 * 109.47132 * 30.00784 * 1 2 3 30 30 H 1.09003 * 109.46940 * 149.99932 * 1 2 3 31 31 H 1.08000 * 126.80595 * 180.25207 * 5 4 3 32 32 H 1.09005 * 109.46752 * 319.99326 * 7 6 2 33 33 H 1.09002 * 109.46771 * 200.00145 * 7 6 2 34 34 H 1.00907 * 111.00097 * 56.04608 * 8 7 6 35 35 H 1.08999 * 109.45836 * 301.35330 * 11 9 8 36 36 H 1.09000 * 109.46169 * 61.30700 * 11 9 8 37 37 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 38 38 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 39 39 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 40 40 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 41 41 H 1.09003 * 109.46873 * 300.00082 * 17 15 14 42 42 H 1.09001 * 109.46886 * 59.99494 * 17 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58580 * 173.39910 * 27 14 13 45 45 H 1.09002 * 109.58042 * 293.81990 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5372 0.0064 6 6 2.3180 -1.0849 0.0005 7 6 1.9225 -2.5391 0.0017 8 7 1.5613 -2.9495 -1.3617 9 6 1.1687 -4.3646 -1.3990 10 1 0.6460 -4.6215 -0.4777 11 6 0.2456 -4.6080 -2.5950 12 6 -0.1921 -6.0775 -2.6166 13 6 1.0450 -6.9683 -2.7680 14 7 2.0023 -6.6377 -1.7037 15 6 2.4886 -7.5994 -0.8942 16 8 3.2780 -7.3136 -0.0190 17 6 2.0513 -9.0300 -1.0768 18 16 2.8735 -10.0737 0.1523 19 6 2.2004 -11.6436 -0.2800 20 1 1.4994 -11.7239 -1.0976 21 6 2.5711 -12.7771 0.4302 22 7 3.4252 -12.6791 1.4270 23 14 1.8569 -14.4413 -0.0276 24 1 0.9273 -14.2825 -1.1747 25 1 2.9566 -15.3646 -0.4065 26 1 1.1195 -15.0000 1.1341 27 6 2.4192 -5.2385 -1.5380 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 4.5528 -1.0838 0.0120 32 1 1.0678 -2.6826 0.6629 33 1 2.7591 -3.1428 0.3534 34 1 2.3156 -2.7661 -2.0064 35 1 -0.6335 -3.9692 -2.5111 36 1 0.7772 -4.3744 -3.5175 37 1 -0.8674 -6.2472 -3.4552 38 1 -0.7020 -6.3185 -1.6838 39 1 1.5048 -6.7928 -3.7405 40 1 0.7537 -8.0153 -2.6851 41 1 0.9711 -9.0989 -0.9483 42 1 2.3204 -9.3672 -2.0778 43 1 3.6839 -13.4711 1.9236 44 1 3.0328 -5.1437 -0.6421 45 1 2.9911 -4.9220 -2.4103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207409560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = -0.440375 kcal Electronic energy + Delta-G solvation = -26534.622410 eV Core-core repulsion = 22680.446400 eV Total energy + Delta-G solvation = -3854.176011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.92492 -41.25352 -38.99871 -37.06203 -34.96971 -34.59305 -34.05913 -33.20439 -31.69033 -30.10610 -28.54616 -27.70173 -26.48358 -26.10076 -23.74497 -23.22497 -22.00911 -21.58161 -20.39533 -19.48031 -18.63048 -18.22780 -18.01765 -17.31796 -16.89230 -16.76783 -16.27276 -16.04543 -15.68806 -15.63430 -15.25594 -14.97226 -14.61230 -14.51245 -14.33770 -14.19408 -13.91818 -13.81918 -13.66931 -13.45575 -13.24540 -13.16325 -13.00812 -12.92143 -12.59817 -12.31970 -12.11219 -11.88041 -11.82564 -11.68748 -11.57767 -11.33476 -11.16648 -10.92499 -10.26686 -10.15489 -9.92860 -9.32113 -8.68574 -8.35523 -6.13983 0.50985 1.20884 1.25354 1.41272 1.45549 1.54391 1.57038 2.06697 2.20542 2.26534 2.98871 3.15847 3.24661 3.35362 3.63226 3.71121 3.79014 3.86430 4.02499 4.05799 4.09875 4.15722 4.25046 4.29262 4.43387 4.50745 4.52923 4.62043 4.65955 4.74281 4.76671 4.80018 4.83933 4.91250 4.99477 5.06402 5.14932 5.29430 5.32016 5.39044 5.41499 5.50584 5.93060 6.19279 6.25419 6.32647 7.05890 7.11633 7.27866 8.73955 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002051 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.068467 B =13649.603807 C =14406.464148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.003 4.003 3 O 0.080 5.920 4 N -0.399 5.399 5 C -0.007 4.007 6 C -0.214 4.214 7 C 0.139 3.861 8 N -0.662 5.662 9 C 0.086 3.914 10 H 0.072 0.928 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.095 3.905 14 N -0.602 5.602 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.122 4.122 18 S -0.155 6.155 19 C -0.543 4.543 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.084 3.916 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.201 0.799 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.347 0.653 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 23.449 -11.028 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 O 0.018 5.982 4 N -0.106 5.106 5 C -0.186 4.186 6 C -0.219 4.219 7 C 0.010 3.990 8 N -0.292 5.292 9 C -0.025 4.025 10 H 0.090 0.910 11 C -0.135 4.135 12 C -0.167 4.167 13 C -0.026 4.026 14 N -0.337 5.337 15 C 0.319 3.681 16 O -0.448 6.448 17 C -0.273 4.273 18 S 0.072 5.928 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.178 1.178 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.040 4.040 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.218 0.782 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.309 25.103 -9.577 28.778 hybrid contribution 0.197 -2.594 -0.539 2.657 sum -10.112 22.509 -10.115 26.669 Atomic orbital electron populations 1.20561 0.81328 1.06062 1.05118 1.24971 0.97556 0.84881 0.99296 1.84770 1.11457 1.34079 1.67917 1.73883 0.97899 1.17697 1.21112 1.25328 1.00964 0.90165 1.02111 1.21031 0.91720 0.97473 1.11631 1.20098 1.00166 0.87324 0.91384 1.60743 1.44523 1.17089 1.06860 1.21875 0.94346 0.85753 1.00557 0.91013 1.21486 0.99478 0.95615 0.96915 1.21977 0.96474 0.94576 1.03692 1.22114 0.89546 1.01033 0.89934 1.48037 1.45340 1.06825 1.33466 1.20171 0.80144 0.87083 0.80701 1.90671 1.36059 1.83061 1.34986 1.23357 1.04919 0.94424 1.04595 1.85610 1.60922 1.02742 1.43543 1.23217 1.31537 0.93052 1.21261 0.89801 1.26150 0.95118 1.03772 0.94237 1.70192 1.32625 1.31388 1.20642 0.84895 0.78202 0.76129 0.78665 1.17823 1.20033 1.19947 1.22470 0.98558 0.80673 1.02334 0.88200 0.88599 0.87492 0.78219 0.88944 0.94302 0.83393 0.89698 0.90674 0.87640 0.92236 0.89230 0.89493 0.87367 0.87514 0.92019 0.91911 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.30 71.23 0.73 0.21 16 2 C 0.00 -0.04 7.49 25.04 0.19 0.15 16 3 O 0.08 1.58 11.20 71.61 0.80 2.38 16 4 N -0.40 -8.95 12.07 -59.27 -0.72 -9.66 16 5 C -0.01 -0.13 12.16 85.71 1.04 0.91 16 6 C -0.21 -3.44 5.84 -19.73 -0.12 -3.56 16 7 C 0.14 2.05 5.82 85.56 0.50 2.55 16 8 N -0.66 -8.43 6.24 -495.19 -3.09 -11.52 16 9 C 0.09 1.29 2.62 44.99 0.12 1.40 16 10 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 11 C -0.10 -1.06 5.50 30.72 0.17 -0.89 16 12 C -0.13 -1.56 6.11 30.78 0.19 -1.37 16 13 C 0.10 1.62 6.33 86.36 0.55 2.17 16 14 N -0.60 -15.27 2.97 -818.91 -2.44 -17.71 16 15 C 0.53 19.72 7.72 87.66 0.68 20.40 16 16 O -0.57 -26.47 15.27 -3.03 -0.05 -26.51 16 17 C -0.12 -4.80 4.50 71.24 0.32 -4.48 16 18 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 19 C -0.54 -30.69 9.50 67.96 0.65 -30.05 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 23 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 24 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.08 1.77 5.69 86.36 0.49 2.26 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.69 8.06 -2.39 -0.02 0.67 16 31 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.09 1.28 8.06 -2.38 -0.02 1.26 16 33 H 0.04 0.68 7.56 -2.39 -0.02 0.66 16 34 H 0.35 4.24 8.41 -89.69 -0.75 3.49 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.57 5.93 -2.39 -0.01 1.56 16 41 H 0.11 3.83 7.69 -2.39 -0.02 3.82 16 42 H 0.11 3.81 7.94 -2.40 -0.02 3.79 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.06 1.71 6.48 -2.39 -0.02 1.69 16 45 H 0.08 1.43 8.05 -2.39 -0.02 1.41 16 Total: -1.00 -78.66 384.61 1.89 -76.78 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.25 Total: 15.61 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.97 Total: -9.16 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -5.95 Total: -94.46 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.76 Total: -24.13 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -78.66 1.89 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.335 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds