Wall clock time and date at job start Tue Mar 31 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35446 * 126.77788 * 2 1 4 4 C 1.41374 * 103.99159 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80898 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46977 * 95.00100 * 5 4 3 7 7 C 1.46907 * 111.00138 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.49106 * 324.93632 * 7 6 5 9 9 C 1.53039 * 109.49942 * 204.83955 * 7 6 5 10 10 C 1.53070 * 109.65812 * 178.74671 * 9 7 6 11 11 C 1.53195 * 109.29524 * 61.15209 * 10 9 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46908 * 89.99760 * 21 19 17 23 23 H 1.48500 * 109.47170 * 210.00084 * 21 19 17 24 24 H 1.48498 * 109.47036 * 329.99844 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 N 1.30182 * 106.38959 * 0.26288 * 4 3 2 27 27 O 1.20923 * 111.60764 * 359.53901 * 26 4 3 28 28 H 1.08994 * 109.47539 * 89.99323 * 1 2 3 29 29 H 1.09002 * 109.46822 * 209.99627 * 1 2 3 30 30 H 1.09000 * 109.46862 * 329.99411 * 1 2 3 31 31 H 1.08008 * 128.00547 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47244 * 335.00589 * 5 4 3 33 33 H 1.08998 * 109.47361 * 215.00389 * 5 4 3 34 34 H 1.00901 * 111.00354 * 56.04592 * 6 5 4 35 35 H 1.09007 * 109.45640 * 298.70485 * 9 7 6 36 36 H 1.09002 * 109.45879 * 58.66035 * 9 7 6 37 37 H 1.08997 * 109.38860 * 301.27396 * 10 9 7 38 38 H 1.09003 * 109.62046 * 181.16739 * 10 9 7 39 39 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 40 40 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 41 41 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 42 42 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 43 43 H 0.96998 * 120.00061 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 45 45 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3000 0.0014 6 7 5.4038 1.4435 1.3814 7 6 6.6718 2.1843 1.4214 8 1 7.2662 1.9355 0.5422 9 6 7.4454 1.8049 2.6861 10 6 8.7815 2.5513 2.7158 11 6 8.5179 4.0602 2.7408 12 7 7.6528 4.4109 1.6063 13 6 8.0155 5.3767 0.7389 14 8 7.2923 5.6572 -0.1934 15 6 9.3191 6.1088 0.9285 16 16 9.5185 7.3358 -0.3871 17 6 11.0770 8.0210 0.0673 18 1 11.5956 7.6515 0.9397 19 6 11.6376 9.0362 -0.6952 20 7 11.0054 9.4869 -1.7581 21 14 13.2895 9.7630 -0.2130 22 1 14.3781 9.0016 -0.8768 23 1 13.3484 11.1843 -0.6392 24 1 13.4553 9.6809 1.2604 25 6 6.3846 3.6890 1.4353 26 7 3.4764 -0.7564 -0.0048 27 8 2.3095 -1.0737 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 2.0345 2.1271 0.0004 32 1 4.7633 2.2873 -0.4327 33 1 5.6608 0.7580 -0.5877 34 1 5.4964 0.5432 1.8276 35 1 6.8603 2.0765 3.5648 36 1 7.6296 0.7306 2.6906 37 1 9.3577 2.2973 1.8262 38 1 9.3410 2.2649 3.6064 39 1 9.4628 4.5976 2.6596 40 1 8.0235 4.3294 3.6742 41 1 9.3164 6.6110 1.8958 42 1 10.1440 5.3975 0.8905 43 1 11.3974 10.1961 -2.2911 44 1 5.7151 3.9256 2.2623 45 1 5.9206 3.9833 0.4939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:54 Heat of formation + Delta-G solvation = 23.648730 kcal Electronic energy + Delta-G solvation = -26260.668448 eV Core-core repulsion = 22407.537019 eV Total energy + Delta-G solvation = -3853.131429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.19957 -40.03941 -37.88637 -36.07335 -34.24704 -33.54997 -32.43957 -32.24812 -30.56345 -28.80003 -28.14924 -26.06750 -25.56033 -25.10394 -23.35204 -22.45060 -21.00205 -20.22710 -19.03384 -17.92849 -17.70503 -17.53909 -16.76847 -16.10097 -15.68154 -15.36412 -15.10817 -14.91872 -14.80993 -14.46859 -14.20068 -13.98328 -13.76300 -13.67391 -13.36349 -13.24379 -13.08260 -12.81478 -12.72755 -12.60564 -12.23760 -11.95685 -11.76874 -11.40647 -11.21150 -11.11753 -11.06970 -11.02136 -10.78418 -10.71120 -10.40504 -9.80828 -9.62423 -9.36743 -9.07325 -8.92962 -8.47326 -8.23013 -6.50715 -6.22167 -3.92808 1.16447 1.89654 2.80180 2.90139 3.04768 3.21716 3.24977 3.29563 3.55395 3.73567 4.04261 4.14000 4.19710 4.44117 4.63422 4.69678 4.76129 4.81882 4.93036 4.94558 4.96008 4.99080 5.12723 5.13301 5.17304 5.26129 5.32636 5.37372 5.39376 5.54537 5.57003 5.65333 5.67925 5.73422 5.75730 5.78408 5.87928 5.95259 6.04050 6.11076 6.44957 6.74746 6.94803 7.56056 7.59179 7.97600 8.34525 8.55789 9.23085 10.85232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.001974 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.306176 B =14178.548833 C =15086.060086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.038 4.038 3 C -0.216 4.216 4 C 0.026 3.974 5 C 0.135 3.865 6 N -0.676 5.676 7 C 0.074 3.926 8 H 0.053 0.947 9 C -0.119 4.119 10 C -0.133 4.133 11 C 0.106 3.894 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.126 3.874 26 N -0.365 5.365 27 O 0.098 5.902 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.346 0.654 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.072 0.928 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.440 -20.515 9.544 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.237 4.237 4 C -0.133 4.133 5 C 0.006 3.994 6 N -0.309 5.309 7 C -0.036 4.036 8 H 0.071 0.929 9 C -0.157 4.157 10 C -0.172 4.172 11 C -0.017 4.017 12 N -0.357 5.357 13 C 0.324 3.676 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C 0.002 3.998 26 N -0.070 5.070 27 O 0.031 5.969 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.190 0.810 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.041 -20.429 8.109 27.812 hybrid contribution 2.218 0.199 1.091 2.480 sum -14.823 -20.230 9.200 26.713 Atomic orbital electron populations 1.20336 0.83982 1.04668 1.04118 1.24516 0.96406 0.86141 1.03057 1.22440 0.91153 1.01144 1.09008 1.23417 0.97408 0.89746 1.02690 1.20286 0.89381 0.99174 0.90568 1.60344 1.30168 1.24300 1.16112 1.21895 0.88771 0.94731 0.98192 0.92916 1.21690 0.96263 0.99928 0.97820 1.21912 0.97059 0.95136 1.03055 1.21728 0.95490 0.95346 0.89138 1.48081 1.21453 1.37791 1.28326 1.20339 0.87472 0.78802 0.81034 1.90685 1.53628 1.64369 1.30469 1.23553 0.96416 1.03138 1.06975 1.85406 1.27188 1.39563 1.31320 1.22858 1.05834 1.23954 1.15681 0.90943 1.24991 0.98304 0.95727 0.94559 1.70014 1.38070 1.26888 1.15280 0.86172 0.82256 0.78274 0.78822 1.20286 1.20741 1.19690 1.21409 0.85514 0.89192 1.03667 1.73837 0.97117 1.16445 1.19565 1.84804 1.11267 1.33264 1.67585 0.89415 0.89895 0.88943 0.80989 0.88152 0.93085 0.83523 0.90720 0.91820 0.91259 0.90245 0.89094 0.91347 0.89231 0.89292 0.92185 0.91012 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.01 0.38 0.12 16 2 C -0.04 -0.29 7.49 -35.30 -0.26 -0.56 16 3 C -0.22 -1.88 11.05 -39.39 -0.44 -2.31 16 4 C 0.03 0.28 6.84 -82.10 -0.56 -0.29 16 5 C 0.14 1.35 6.07 -4.98 -0.03 1.32 16 6 N -0.68 -6.43 6.30 -107.86 -0.68 -7.11 16 7 C 0.07 0.76 2.65 -67.59 -0.18 0.58 16 8 H 0.05 0.61 7.80 -51.93 -0.41 0.21 16 9 C -0.12 -0.99 5.16 -26.67 -0.14 -1.13 16 10 C -0.13 -1.16 6.09 -26.59 -0.16 -1.32 16 11 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 12 N -0.62 -8.82 2.97 -172.77 -0.51 -9.34 16 13 C 0.54 10.22 7.72 -10.98 -0.08 10.14 16 14 O -0.52 -11.83 15.27 5.56 0.08 -11.74 16 15 C -0.15 -3.05 4.50 36.01 0.16 -2.89 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.13 1.58 5.90 -3.71 -0.02 1.56 16 26 N -0.37 -4.22 12.07 33.43 0.40 -3.81 16 27 O 0.10 0.99 11.20 17.17 0.19 1.18 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.10 1.01 7.56 -51.93 -0.39 0.62 16 33 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 34 H 0.35 3.11 8.33 -39.29 -0.33 2.78 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 42 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.32 6.48 -51.92 -0.34 0.99 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -35.05 384.94 -9.15 -44.20 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.77 Total: 0.34 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.16 Total: -6.56 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.06 Total: -45.66 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.28 Total: -10.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.05 -9.15 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds