Wall clock time and date at job start Tue Mar 31 2020 22:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35446 * 126.77788 * 2 1 4 4 C 1.41374 * 103.99159 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80898 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46977 * 95.00100 * 5 4 3 7 7 C 1.46907 * 111.00138 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.49106 * 324.93632 * 7 6 5 9 9 C 1.53039 * 109.49942 * 204.83955 * 7 6 5 10 10 C 1.53070 * 109.65812 * 178.74671 * 9 7 6 11 11 C 1.53195 * 109.29524 * 61.15209 * 10 9 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34784 * 120.63188 * 233.51696 * 12 11 10 14 14 O 1.21280 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99526 * 359.97438 * 13 12 11 16 16 S 1.81003 * 109.46503 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99581 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99586 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46908 * 89.99760 * 21 19 17 23 23 H 1.48500 * 109.47170 * 210.00084 * 21 19 17 24 24 H 1.48498 * 109.47036 * 329.99844 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 N 1.30182 * 106.38959 * 0.26288 * 4 3 2 27 27 O 1.20923 * 111.60764 * 359.53901 * 26 4 3 28 28 H 1.08994 * 109.47539 * 89.99323 * 1 2 3 29 29 H 1.09002 * 109.46822 * 209.99627 * 1 2 3 30 30 H 1.09000 * 109.46862 * 329.99411 * 1 2 3 31 31 H 1.08008 * 128.00547 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47244 * 335.00589 * 5 4 3 33 33 H 1.08998 * 109.47361 * 215.00389 * 5 4 3 34 34 H 1.00901 * 111.00354 * 56.04592 * 6 5 4 35 35 H 1.09007 * 109.45640 * 298.70485 * 9 7 6 36 36 H 1.09002 * 109.45879 * 58.66035 * 9 7 6 37 37 H 1.08997 * 109.38860 * 301.27396 * 10 9 7 38 38 H 1.09003 * 109.62046 * 181.16739 * 10 9 7 39 39 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 40 40 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 41 41 H 1.08996 * 109.47104 * 299.99859 * 15 13 12 42 42 H 1.08994 * 109.47167 * 60.00297 * 15 13 12 43 43 H 0.96998 * 120.00061 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 45 45 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3000 0.0014 6 7 5.4038 1.4435 1.3814 7 6 6.6718 2.1843 1.4214 8 1 7.2662 1.9355 0.5422 9 6 7.4454 1.8049 2.6861 10 6 8.7815 2.5513 2.7158 11 6 8.5179 4.0602 2.7408 12 7 7.6528 4.4109 1.6063 13 6 8.0155 5.3767 0.7389 14 8 7.2923 5.6572 -0.1934 15 6 9.3191 6.1088 0.9285 16 16 9.5185 7.3358 -0.3871 17 6 11.0770 8.0210 0.0673 18 1 11.5956 7.6515 0.9397 19 6 11.6376 9.0362 -0.6952 20 7 11.0054 9.4869 -1.7581 21 14 13.2895 9.7630 -0.2130 22 1 14.3781 9.0016 -0.8768 23 1 13.3484 11.1843 -0.6392 24 1 13.4553 9.6809 1.2604 25 6 6.3846 3.6890 1.4353 26 7 3.4764 -0.7564 -0.0048 27 8 2.3095 -1.0737 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 2.0345 2.1271 0.0004 32 1 4.7633 2.2873 -0.4327 33 1 5.6608 0.7580 -0.5877 34 1 5.4964 0.5432 1.8276 35 1 6.8603 2.0765 3.5648 36 1 7.6296 0.7306 2.6906 37 1 9.3577 2.2973 1.8262 38 1 9.3410 2.2649 3.6064 39 1 9.4628 4.5976 2.6596 40 1 8.0235 4.3294 3.6742 41 1 9.3164 6.6110 1.8958 42 1 10.1440 5.3975 0.8905 43 1 11.3974 10.1961 -2.2911 44 1 5.7151 3.9256 2.2623 45 1 5.9206 3.9833 0.4939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207410502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:53 Heat of formation + Delta-G solvation = -0.408779 kcal Electronic energy + Delta-G solvation = -26261.711660 eV Core-core repulsion = 22407.537019 eV Total energy + Delta-G solvation = -3854.174641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93914 -41.25228 -39.03794 -37.03732 -35.03354 -34.58967 -34.23182 -33.18548 -31.76301 -30.02703 -28.63822 -27.71713 -26.88364 -26.21502 -24.09249 -23.29107 -22.02701 -20.97621 -20.33317 -19.49476 -18.67553 -18.31701 -18.15132 -17.15973 -16.88365 -16.79548 -16.50670 -16.08416 -15.85939 -15.67587 -15.23931 -15.05694 -14.69645 -14.51753 -14.35144 -14.13222 -13.94572 -13.88260 -13.79984 -13.44903 -13.30986 -13.16679 -13.05440 -12.89548 -12.65455 -12.59104 -12.11246 -11.99753 -11.95362 -11.71690 -11.56434 -11.17413 -11.14642 -10.89911 -10.26787 -10.26101 -9.86991 -9.55315 -8.68037 -8.34839 -6.13418 0.49342 1.16128 1.25256 1.42436 1.45356 1.54695 1.56314 2.05680 2.22206 2.26963 2.92492 2.99315 3.24074 3.26652 3.47234 3.59091 3.83310 3.85115 3.98570 4.08619 4.11149 4.21339 4.23993 4.27075 4.27649 4.42951 4.49448 4.53274 4.59526 4.67790 4.74744 4.76725 4.84888 4.91130 4.92906 5.01888 5.03433 5.06859 5.26195 5.28065 5.41485 5.46302 5.79745 6.18468 6.19471 6.27748 7.06268 7.11837 7.26604 8.74394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.001974 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.306176 B =14178.548833 C =15086.060086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.026 4.026 3 C -0.233 4.233 4 C 0.015 3.985 5 C 0.139 3.861 6 N -0.669 5.669 7 C 0.083 3.917 8 H 0.036 0.964 9 C -0.113 4.113 10 C -0.126 4.126 11 C 0.096 3.904 12 N -0.606 5.606 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.122 4.122 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.257 1.257 25 C 0.126 3.874 26 N -0.393 5.393 27 O 0.087 5.913 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.187 0.813 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.352 0.648 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 -21.740 12.313 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.255 4.255 4 C -0.144 4.144 5 C 0.010 3.990 6 N -0.303 5.303 7 C -0.027 4.027 8 H 0.054 0.946 9 C -0.151 4.151 10 C -0.165 4.165 11 C -0.026 4.026 12 N -0.340 5.340 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.273 4.273 16 S 0.074 5.926 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C 0.003 3.997 26 N -0.099 5.099 27 O 0.022 5.978 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.204 0.796 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.760 -21.711 10.932 29.526 hybrid contribution 1.987 0.475 0.287 2.063 sum -14.772 -21.237 11.219 28.197 Atomic orbital electron populations 1.20580 0.80848 1.06133 1.05464 1.25252 0.97941 0.85067 1.00715 1.22698 0.90610 1.02224 1.09939 1.23571 0.98114 0.89823 1.02862 1.20195 0.89391 0.98679 0.90763 1.60275 1.29657 1.24589 1.15756 1.21756 0.89034 0.92985 0.98953 0.94605 1.21682 0.95786 1.00913 0.96713 1.21898 0.97360 0.93282 1.03964 1.22105 0.95019 0.97054 0.88417 1.48079 1.22144 1.35948 1.27874 1.20165 0.86768 0.79719 0.81343 1.90669 1.54820 1.66278 1.32805 1.23364 0.97980 1.01489 1.04516 1.85606 1.28144 1.42877 1.35991 1.23194 1.05770 1.24233 1.16081 0.89815 1.26141 1.02719 0.96050 0.94286 1.70184 1.40258 1.27636 1.16706 0.84946 0.76550 0.77239 0.79196 1.19341 1.20330 1.18057 1.21491 0.84744 0.90649 1.02816 1.73822 0.98038 1.16977 1.21087 1.84762 1.11178 1.34171 1.67705 0.87946 0.88571 0.87289 0.79610 0.88796 0.93837 0.82796 0.89521 0.90191 0.92451 0.87233 0.89173 0.88886 0.87317 0.87457 0.92008 0.89677 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 71.24 0.74 0.39 16 2 C -0.03 -0.38 7.49 25.04 0.19 -0.19 16 3 C -0.23 -3.94 11.05 22.40 0.25 -3.69 16 4 C 0.01 0.31 6.84 43.57 0.30 0.61 16 5 C 0.14 2.87 6.07 85.56 0.52 3.39 16 6 N -0.67 -12.25 6.30 -495.16 -3.12 -15.37 16 7 C 0.08 1.61 2.65 44.99 0.12 1.73 16 8 H 0.04 0.83 7.80 -2.38 -0.02 0.81 16 9 C -0.11 -1.54 5.16 30.63 0.16 -1.39 16 10 C -0.13 -1.79 6.09 30.68 0.19 -1.60 16 11 C 0.10 1.79 6.34 86.36 0.55 2.33 16 12 N -0.61 -16.68 2.97 -818.90 -2.44 -19.12 16 13 C 0.53 20.54 7.72 87.66 0.68 21.22 16 14 O -0.57 -27.13 15.27 -3.03 -0.05 -27.18 16 15 C -0.12 -4.94 4.50 71.24 0.32 -4.62 16 16 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 17 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 21 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 C 0.13 3.12 5.90 86.36 0.51 3.63 16 26 N -0.39 -9.13 12.07 -49.54 -0.60 -9.73 16 27 O 0.09 1.74 11.20 71.61 0.80 2.54 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.09 2.03 7.56 -2.39 -0.02 2.01 16 33 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 34 H 0.35 5.88 8.33 -89.69 -0.75 5.14 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.73 5.93 -2.39 -0.01 1.71 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 3.95 7.94 -2.40 -0.02 3.93 16 42 H 0.11 3.92 7.69 -2.40 -0.02 3.90 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.95 6.48 -2.38 -0.02 1.93 16 Total: -1.00 -79.85 384.94 1.64 -78.21 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.26 Total: 18.30 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.63 Total: -7.49 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -5.87 Total: -100.12 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.76 Total: -24.64 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -79.85 1.64 -78.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.799 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds