Wall clock time and date at job start Tue Mar 31 2020 22:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 128.00294 * 2 1 4 4 O 1.34040 * 106.44210 * 179.97438 * 3 2 1 5 5 N 1.20919 * 111.56872 * 359.70817 * 4 3 2 6 6 C 1.30176 * 111.60491 * 0.48182 * 5 4 3 7 7 C 1.50697 * 126.80281 * 179.79726 * 6 5 4 8 8 N 1.46903 * 109.46985 * 269.69047 * 7 6 5 9 9 C 1.46907 * 110.99921 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.49521 * 35.06017 * 9 8 7 11 11 C 1.53034 * 109.49940 * 155.16330 * 9 8 7 12 12 C 1.53346 * 109.61010 * 181.32379 * 11 9 8 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00016 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99978 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47317 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46913 * 120.00256 * 23 21 19 26 26 H 1.48504 * 109.46808 * 240.00126 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 28 28 H 1.09005 * 109.47504 * 270.04059 * 1 2 3 29 29 H 1.08998 * 109.47451 * 30.04119 * 1 2 3 30 30 H 1.08998 * 109.47093 * 150.04213 * 1 2 3 31 31 H 1.07997 * 126.77838 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47164 * 149.69447 * 7 6 5 33 33 H 1.08997 * 109.47415 * 29.68801 * 7 6 5 34 34 H 1.00896 * 111.00209 * 303.95522 * 8 7 6 35 35 H 1.08999 * 109.45836 * 301.33801 * 11 9 8 36 36 H 1.09000 * 109.46169 * 61.29170 * 11 9 8 37 37 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 38 38 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 39 39 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 40 40 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 41 41 H 1.09003 * 109.46873 * 300.00082 * 17 15 14 42 42 H 1.09001 * 109.46886 * 59.99494 * 17 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58580 * 173.39910 * 27 14 13 45 45 H 1.09006 * 109.57831 * 293.67403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0674 0.0000 4 8 3.5876 0.5748 0.0006 5 7 3.5878 -0.6344 0.0066 6 6 2.3776 -1.1139 0.0007 7 6 1.9827 -2.5682 0.0010 8 7 1.8550 -3.0412 -1.3839 9 6 1.4696 -4.4583 -1.4228 10 1 0.7984 -4.6757 -0.5921 11 6 0.7608 -4.7588 -2.7454 12 6 0.3281 -6.2296 -2.7748 13 6 1.5701 -7.1209 -2.6754 14 7 2.3352 -6.7391 -1.4806 15 6 2.6748 -7.6617 -0.5586 16 8 3.3061 -7.3337 0.4236 17 6 2.2699 -9.1008 -0.7482 18 16 2.8694 -10.0851 0.6473 19 6 2.2737 -11.6757 0.1782 20 1 1.7205 -11.7954 -0.7415 21 6 2.5156 -12.7747 0.9908 22 7 3.1895 -12.6287 2.1120 23 14 1.8834 -14.4608 0.4938 24 1 1.1612 -14.3572 -0.7996 25 1 3.0282 -15.3953 0.3475 26 1 0.9587 -14.9703 1.5382 27 6 2.7228 -5.3321 -1.3097 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 2.0575 2.1095 -0.0004 32 1 1.0284 -2.6855 0.5145 33 1 2.7462 -3.1519 0.5152 34 1 1.1995 -2.4743 -1.9006 35 1 -0.1178 -4.1206 -2.8397 36 1 1.4412 -4.5643 -3.5745 37 1 -0.1965 -6.4395 -3.7069 38 1 -0.3326 -6.4310 -1.9316 39 1 2.1881 -6.9870 -3.5633 40 1 1.2656 -8.1645 -2.5962 41 1 1.1832 -9.1686 -0.8009 42 1 2.7029 -9.4812 -1.6734 43 1 3.3582 -13.3967 2.6800 44 1 3.1767 -5.1948 -0.3283 45 1 3.4367 -5.0531 -2.0847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207429526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:47 Heat of formation + Delta-G solvation = 24.334634 kcal Electronic energy + Delta-G solvation = -26501.471662 eV Core-core repulsion = 22648.369976 eV Total energy + Delta-G solvation = -3853.101686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.23863 -40.02905 -37.91391 -36.28259 -34.63572 -32.79524 -32.42987 -32.12536 -30.56413 -28.87165 -28.46866 -26.07777 -25.55723 -25.09622 -22.60476 -21.94975 -21.46156 -20.89005 -19.03694 -17.88928 -17.78210 -17.66422 -16.76215 -16.23798 -15.63346 -15.41509 -15.06625 -14.81743 -14.80571 -14.63149 -14.17884 -13.86811 -13.77157 -13.72171 -13.39050 -13.23437 -13.04880 -12.81023 -12.72608 -12.55853 -12.21023 -11.94556 -11.75175 -11.31088 -11.22088 -11.13401 -11.07227 -11.00880 -10.77867 -10.69674 -10.26902 -9.79185 -9.71951 -9.34842 -9.07493 -8.93207 -8.46028 -8.21314 -6.49829 -6.21600 -3.92087 1.19066 1.81996 2.90796 2.95650 3.06547 3.21307 3.25490 3.30720 3.55945 3.73442 3.95600 4.19699 4.21317 4.43630 4.48453 4.62167 4.69013 4.75512 4.92045 4.96397 5.03557 5.08125 5.12692 5.13621 5.21917 5.27932 5.33127 5.37595 5.39997 5.42099 5.56205 5.64801 5.68130 5.71460 5.76311 5.78931 5.88721 5.97141 6.04767 6.11774 6.45290 6.75610 6.95806 7.57773 7.60213 8.00359 8.35394 8.57846 9.23685 10.85870 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.194828 B =13630.024438 C =14324.111467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.200 4.200 3 C -0.067 4.067 4 O 0.104 5.896 5 N -0.343 5.343 6 C 0.021 3.979 7 C 0.135 3.865 8 N -0.675 5.675 9 C 0.076 3.924 10 H 0.053 0.947 11 C -0.118 4.118 12 C -0.132 4.132 13 C 0.106 3.894 14 N -0.620 5.620 15 C 0.535 3.465 16 O -0.516 6.516 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.125 3.875 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.214 0.786 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 26.713 -10.664 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.204 4.204 3 C -0.149 4.149 4 O 0.035 5.965 5 N -0.044 5.044 6 C -0.139 4.139 7 C 0.006 3.994 8 N -0.308 5.308 9 C -0.035 4.035 10 H 0.071 0.929 11 C -0.156 4.156 12 C -0.171 4.171 13 C -0.017 4.017 14 N -0.356 5.356 15 C 0.323 3.677 16 O -0.391 6.391 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.001 3.999 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.515 26.404 -9.084 28.672 hybrid contribution -2.947 -1.093 -1.240 3.379 sum -9.461 25.310 -10.324 28.926 Atomic orbital electron populations 1.20090 0.87448 1.03091 1.02783 1.21355 0.98613 0.91804 1.08655 1.25760 0.83350 1.01092 1.04652 1.84865 1.29026 1.15697 1.66868 1.73912 1.22311 0.90955 1.17253 1.23325 0.88536 0.97955 1.04045 1.20239 1.01165 0.87297 0.90734 1.60286 1.55191 1.02894 1.12446 1.21883 0.96401 0.87285 0.97892 0.92912 1.21736 0.99935 0.96742 0.97236 1.21961 0.97849 0.94413 1.02910 1.21728 0.92298 0.99920 0.87801 1.48081 1.56873 1.07857 1.22839 1.20345 0.78600 0.87034 0.81745 1.90694 1.38681 1.80978 1.28708 1.23548 1.04495 0.94738 1.07239 1.85429 1.72802 1.01738 1.23556 1.22897 1.41273 0.93393 1.10667 0.90895 1.25001 0.94896 0.99210 0.94547 1.70029 1.37568 1.31149 1.11493 0.86116 0.78590 0.82223 0.78556 1.19615 1.20565 1.20581 1.21409 0.95354 0.79263 1.03827 0.90763 0.90866 0.91275 0.76903 0.92595 0.88665 0.83754 0.91849 0.90710 0.90248 0.91246 0.91367 0.89100 0.89304 0.89246 0.92240 0.89172 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.37 36.00 0.37 0.03 16 2 C -0.20 -1.47 6.32 -104.42 -0.66 -2.13 16 3 C -0.07 -0.43 12.26 29.74 0.36 -0.06 16 4 O 0.10 1.02 11.20 17.18 0.19 1.21 16 5 N -0.34 -4.16 12.07 33.42 0.40 -3.76 16 6 C 0.02 0.22 6.84 -82.10 -0.56 -0.35 16 7 C 0.13 1.34 5.99 -4.98 -0.03 1.31 16 8 N -0.68 -6.26 6.30 -107.86 -0.68 -6.94 16 9 C 0.08 0.76 2.65 -67.59 -0.18 0.58 16 10 H 0.05 0.58 7.80 -51.93 -0.41 0.17 16 11 C -0.12 -0.93 5.17 -26.53 -0.14 -1.07 16 12 C -0.13 -1.11 6.11 -26.45 -0.16 -1.27 16 13 C 0.11 1.15 6.33 -3.71 -0.02 1.12 16 14 N -0.62 -9.02 2.97 -172.77 -0.51 -9.53 16 15 C 0.53 10.41 7.72 -10.98 -0.08 10.32 16 16 O -0.52 -12.12 15.27 5.56 0.08 -12.03 16 17 C -0.15 -3.07 4.50 36.01 0.16 -2.90 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.13 1.66 5.90 -3.71 -0.02 1.64 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.21 0.40 8.06 -52.49 -0.42 -0.03 16 32 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.10 1.13 7.56 -51.93 -0.39 0.74 16 34 H 0.34 2.59 8.33 -39.29 -0.33 2.26 16 35 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.00 5.93 -51.93 -0.31 0.70 16 41 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 42 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 1.42 6.48 -51.93 -0.34 1.09 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -36.05 384.84 -8.74 -44.79 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.77 Total: -0.74 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.76 Total: -5.75 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.06 Total: -45.77 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.28 Total: -10.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.05 -8.74 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207429526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.128 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds