Wall clock time and date at job start Tue Mar 31 2020 22:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34480 * 126.16449 * 2 1 4 4 C 1.30259 * 108.70298 * 180.26703 * 3 2 1 5 5 O 1.33976 * 108.75725 * 359.75895 * 4 3 2 6 6 C 1.34329 * 126.16790 * 179.85202 * 2 1 3 7 7 C 1.50697 * 126.44226 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.46985 * 89.70883 * 7 6 2 9 9 C 1.46907 * 110.99921 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.49521 * 35.06017 * 9 8 7 11 11 C 1.53034 * 109.49940 * 155.16330 * 9 8 7 12 12 C 1.53346 * 109.61010 * 181.32379 * 11 9 8 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00016 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99828 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99881 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47454 * 89.99835 * 23 21 19 25 25 H 1.48505 * 109.46671 * 209.99797 * 23 21 19 26 26 H 1.48499 * 109.47174 * 329.99556 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 28 28 H 1.09003 * 109.46896 * 270.14262 * 1 2 3 29 29 H 1.09001 * 109.47011 * 30.14351 * 1 2 3 30 30 H 1.09003 * 109.46916 * 150.14496 * 1 2 3 31 31 H 1.07991 * 125.62457 * 179.73665 * 4 3 2 32 32 H 1.09003 * 109.47164 * 329.71283 * 7 6 2 33 33 H 1.08997 * 109.47415 * 209.70637 * 7 6 2 34 34 H 1.00896 * 111.00209 * 303.95522 * 8 7 6 35 35 H 1.08999 * 109.45836 * 301.33801 * 11 9 8 36 36 H 1.09000 * 109.46169 * 61.29170 * 11 9 8 37 37 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 38 38 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 39 39 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 40 40 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 41 41 H 1.09003 * 109.46873 * 300.00082 * 17 15 14 42 42 H 1.09001 * 109.46886 * 59.99494 * 17 15 14 43 43 H 0.96999 * 119.99870 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.58580 * 173.39910 * 27 14 13 45 45 H 1.09006 * 109.57831 * 293.67403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 -0.0058 5 8 3.5735 -0.6446 -0.0042 6 6 2.2998 -1.0844 0.0028 7 6 1.8494 -2.5225 0.0060 8 7 1.6968 -2.9909 -1.3780 9 6 1.2572 -4.3922 -1.4141 10 1 0.5821 -4.5832 -0.5800 11 6 0.5309 -4.6658 -2.7331 12 6 0.0419 -6.1190 -2.7594 13 6 1.2492 -7.0573 -2.6653 14 7 2.0342 -6.7045 -1.4746 15 6 2.3425 -7.6390 -0.5536 16 8 2.9907 -7.3351 0.4253 17 6 1.8817 -9.0617 -0.7403 18 16 2.4498 -10.0676 0.6530 19 6 1.7911 -11.6343 0.1878 20 1 1.2292 -11.7331 -0.7291 21 6 1.9945 -12.7415 1.0000 22 7 1.5020 -13.9118 0.6527 23 14 2.9659 -12.5703 2.5863 24 1 2.0416 -12.2343 3.6989 25 1 3.6552 -13.8513 2.8852 26 1 3.9731 -11.4895 2.4359 27 6 2.4763 -5.3134 -1.3064 28 1 -0.3633 0.0026 1.0277 29 1 -0.3633 0.8887 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 4.4066 1.3435 -0.0112 32 1 0.8937 -2.6028 0.5241 33 1 2.5924 -3.1349 0.5169 34 1 1.0611 -2.3994 -1.8919 35 1 -0.3230 -3.9944 -2.8235 36 1 1.2142 -4.4980 -3.5655 37 1 -0.4950 -6.3089 -3.6888 38 1 -0.6220 -6.2944 -1.9129 39 1 1.8675 -6.9476 -3.5563 40 1 0.9052 -8.0883 -2.5840 41 1 0.7930 -9.0877 -0.7877 42 1 2.2953 -9.4588 -1.6673 43 1 1.6438 -14.6854 1.2204 44 1 2.9399 -5.1932 -0.3273 45 1 3.1967 -5.0624 -2.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207431432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:34 Heat of formation + Delta-G solvation = -12.609816 kcal Electronic energy + Delta-G solvation = -26588.575107 eV Core-core repulsion = 22733.871389 eV Total energy + Delta-G solvation = -3854.703717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.67044 -40.15575 -37.98519 -35.98396 -35.41288 -32.99472 -32.45402 -31.98602 -30.57204 -29.16568 -27.72699 -25.72552 -25.37237 -25.19824 -22.78299 -22.33760 -21.22001 -20.92459 -19.16433 -17.74849 -17.50492 -17.04188 -16.88773 -16.37094 -15.78104 -15.51004 -15.15098 -15.05718 -14.93791 -14.80330 -14.18482 -13.96953 -13.74518 -13.69232 -13.50665 -13.34398 -13.08870 -12.91880 -12.78378 -12.70271 -12.32800 -12.08393 -11.80462 -11.36402 -11.31642 -11.29225 -11.17841 -11.02316 -10.83783 -10.79819 -10.58931 -9.87403 -9.51007 -9.19467 -9.02149 -8.97868 -8.58645 -8.50722 -6.93915 -6.30587 -4.02443 1.06468 2.27825 2.41082 2.67084 2.89747 3.14202 3.31758 3.49419 3.54959 3.73861 3.82319 4.28664 4.31718 4.36543 4.43727 4.55135 4.62698 4.67962 4.70195 4.88298 4.99718 5.03190 5.07868 5.08652 5.13936 5.16688 5.22953 5.30128 5.35153 5.56940 5.57847 5.60357 5.63355 5.64691 5.72738 5.74682 5.85341 5.94572 5.96382 5.96941 6.31933 6.62319 6.82220 7.35619 7.43501 7.92417 8.39525 8.40886 9.15651 10.78546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002200 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.884176 B =12721.787378 C =13630.654177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 N -0.488 5.488 4 C 0.173 3.827 5 O -0.193 6.193 6 C -0.035 4.035 7 C 0.140 3.860 8 N -0.679 5.679 9 C 0.075 3.925 10 H 0.055 0.945 11 C -0.119 4.119 12 C -0.133 4.133 13 C 0.104 3.896 14 N -0.618 5.618 15 C 0.534 3.466 16 O -0.519 6.519 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.125 3.875 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.346 0.654 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 27.316 -7.650 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 N -0.218 5.218 4 C -0.054 4.054 5 O -0.078 6.078 6 C -0.088 4.088 7 C 0.011 3.989 8 N -0.312 5.312 9 C -0.035 4.035 10 H 0.073 0.927 11 C -0.157 4.157 12 C -0.172 4.172 13 C -0.019 4.019 14 N -0.354 5.354 15 C 0.322 3.678 16 O -0.394 6.394 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C 0.001 3.999 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.166 0.834 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.355 27.988 -6.218 28.702 hybrid contribution -1.014 -0.950 -0.284 1.418 sum -2.369 27.038 -6.502 27.909 Atomic orbital electron populations 1.20121 0.86586 1.03200 1.03019 1.21543 0.97929 0.87703 1.06095 1.70355 1.01460 1.31689 1.18247 1.28032 0.97511 0.79448 1.00409 1.84474 1.30012 1.24398 1.68933 1.22992 0.80945 0.97260 1.07643 1.20350 1.00876 0.86580 0.91093 1.60335 1.55411 1.02974 1.12443 1.21893 0.96150 0.87324 0.98144 0.92742 1.21746 0.99856 0.96986 0.97156 1.21961 0.97846 0.94227 1.03115 1.21771 0.92304 1.00002 0.87808 1.48047 1.55629 1.08680 1.23085 1.20313 0.79029 0.86704 0.81769 1.90688 1.38495 1.81216 1.28952 1.23308 1.04548 0.94049 1.05251 1.84809 1.72885 1.05545 1.28448 1.22302 1.40061 0.92062 1.12405 0.89389 1.24715 0.94625 0.94120 0.97867 1.69937 1.43765 0.99671 1.38268 0.86735 0.81992 0.79479 0.83655 1.19235 1.19935 1.15909 1.21428 0.95236 0.79380 1.03841 0.90606 0.90376 0.91116 0.73482 0.91300 0.88433 0.83419 0.91690 0.90626 0.90074 0.91172 0.91170 0.88975 0.88558 0.88470 0.91938 0.89167 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.05 36.01 0.36 -0.10 16 2 C -0.01 -0.11 7.11 -82.81 -0.59 -0.70 16 3 N -0.49 -4.95 11.29 -11.18 -0.13 -5.08 16 4 C 0.17 1.37 13.23 52.10 0.69 2.06 16 5 O -0.19 -1.92 10.78 5.34 0.06 -1.86 16 6 C -0.03 -0.32 6.90 -35.69 -0.25 -0.57 16 7 C 0.14 1.15 5.64 -4.98 -0.03 1.13 16 8 N -0.68 -5.34 6.30 -107.86 -0.68 -6.02 16 9 C 0.07 0.64 2.65 -67.59 -0.18 0.47 16 10 H 0.05 0.52 7.80 -51.93 -0.41 0.11 16 11 C -0.12 -0.82 5.17 -26.53 -0.14 -0.96 16 12 C -0.13 -1.00 6.11 -26.45 -0.16 -1.16 16 13 C 0.10 1.02 6.33 -3.71 -0.02 1.00 16 14 N -0.62 -8.10 2.97 -172.77 -0.51 -8.62 16 15 C 0.53 9.51 7.72 -10.98 -0.08 9.43 16 16 O -0.52 -11.15 15.27 5.56 0.08 -11.06 16 17 C -0.12 -2.32 4.50 36.01 0.16 -2.15 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 27 C 0.12 1.45 5.90 -3.71 -0.02 1.42 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 7.80 -51.93 -0.40 -0.07 16 31 H 0.25 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.07 0.48 7.72 -51.93 -0.40 0.08 16 33 H 0.10 0.92 7.56 -51.93 -0.39 0.53 16 34 H 0.35 2.26 8.33 -39.29 -0.33 1.94 16 35 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.93 5.93 -51.93 -0.31 0.63 16 41 H 0.10 1.70 7.69 -51.92 -0.40 1.30 16 42 H 0.10 1.74 7.94 -51.91 -0.41 1.32 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 1.24 6.48 -51.93 -0.34 0.91 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -35.71 381.41 -8.17 -43.88 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.77 Total: -0.80 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.04 Total: -1.99 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.54 Total: -45.27 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.14 Total: -12.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.71 -8.17 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207431432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds